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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATGGCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNTATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAGCAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCAGATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG]
[+] EMBL AL694983 [GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATGGCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNTATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAGCAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCAGATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG]
consensusID : consensus_6962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 786 fasta sequence
[GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA--AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTTTTTTTTT]
[+] EMBL BX610944 [GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAAT ]
[+] EMBL BX615688 [ GGTTTGATACTGCTGTAAGGGACCGAATAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTTTTTTTTT]
[+] EMBL BX621398 [ GGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAANAATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCNAACAGTCAACGAAGCAGCATGACGAAAAAAACAAt ]
[-] EMBL AGA282720 [ TAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTT ]
consensusID : consensus_6962#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[TCCCCGAGGTTATTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGTAGCAAAGCAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAACAGTCAACGAAGCAGCATGACGAAAAAAACAAA]
[+] EMBL AL932834 [TCCCCGAGGTTATTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGTAGCAAAGCAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAACAGTCAACGAAGCAGCATGACGAAAAAAACAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6962#1 GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCG 60
consensus_6962#2 --------TCCCCGAGGTTAT----TTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCG 48
consensus_6962#0 ------------------------------------------------------------
consensus_6962#1 TGGTTGGGGGAATGGGAA-GGCGTGGAAAAGGTTGAACCTT-TTCTCTCTTTTCTTTACT 118
consensus_6962#2 TGGTTGGGGGAATGGGAA-GGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACT 107
consensus_6962#0 -----GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTT-TTCTCTCTTTTCTTTACT 54
* * * ***************** *** ******************
consensus_6962#1 TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGAT-TGGTACGATGG-AGCAA-- 174
consensus_6962#2 TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGAT-TGGTACGATGGTAGCAAAG 166
consensus_6962#0 TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGG-AGCAA-- 111
**************************************** *********** *****
consensus_6962#1 CCAAAGCATTCGAAGCGTTTTGTTTTTT-CACCCGAGCGCTTACCGGATTATTGGGGGAA 233
consensus_6962#2 CAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAA 226
consensus_6962#0 CCAAAGCATTCGAAGCGTTTTGTTTTTT-CACCCGAGCGCTTACCGGATTATTGGGGGAA 170
* * ************** * ** ** *******************************
consensus_6962#1 TAGTACTAG-GGCTGCGGTAGTGG-TGGTGGTGGTAGTGGAGTTAGTA-GCTGTGGCGTT 290
consensus_6962#2 TAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTT 286
consensus_6962#0 TAGTACTAG-GGCTGCGGTAGTGG-TGGTGGTGGTAGTGGAGTTAGTA-GCTGTGGCGTT 227
******** ************** *************** ******* ***********
consensus_6962#1 TGGAATGATGTGTATCCCTTT-GTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 349
consensus_6962#2 TGGAATGATGTGTATCCCTTT-GTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 345
consensus_6962#0 TGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 287
******************** **************************************
consensus_6962#1 CAGCCTCCATT-TCTTT-CCCAACTGGGGTGTCCACCAAACAATGCGT---TCTCATTTG 404
consensus_6962#2 CAGCCTCCATT-TCTTT-CCCAACTGGGGTGTCCACCAAACAATGCGT---TCTCATTTG 400
consensus_6962#0 CAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATG 347
*********** ***** ****************************** ** ** **
consensus_6962#1 GCAGTGG-AATAATCGTAGCGTTCTGTTCGG-AGTGCACGAGTCCTTTGCTAACGCTTAG 462
consensus_6962#2 GCAGTGG-AATAATCGTAGCGTTCTGTTCGG-AGTGCACGAGTCCTTTGCTAACGCTTAG 458
consensus_6962#0 GCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAG 407
******* *********************** ****************************
consensus_6962#1 CCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAA-CAAATCAGGGAACCCGCAAT 521
consensus_6962#2 CCGATTCAA-CAGTCAACGAAGCAGCATGACGAAAAAAA-CAAA---------------- 500
consensus_6962#0 CCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAAT 467
********* ************************ * ** ****
consensus_6962#1 TTGCTTTACCATTGCTCGGTTACGTATATTTCTTTA--GCAACGTATGCACGCTGCCTCT 579
consensus_6962#2 ------------------------------------------------------------
consensus_6962#0 TTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCT 527
consensus_6962#1 TTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAA-AGGACATATCCGCTA 638
consensus_6962#2 ------------------------------------------------------------
consensus_6962#0 TTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTA 587
consensus_6962#1 CTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTAT 698
consensus_6962#2 ------------------------------------------------------------
consensus_6962#0 CTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNT 647
consensus_6962#1 ---CTTAAGTTTTTTTTACCATTGCTTCCTTCG--CTGTTACCGCAGC----GACGGTAG 749
consensus_6962#2 ------------------------------------------------------------
consensus_6962#0 ATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAG 707
consensus_6962#1 CAGGTTCAA-AAGTGTTTGTAATTTTCATTTTTTTTTT---------------------- 786
consensus_6962#2 ------------------------------------------------------------
consensus_6962#0 CAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCA 767
consensus_6962#1 ---------------------------------------
consensus_6962#2 ---------------------------------------
consensus_6962#0 GATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG 806
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||