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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1298 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCGCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGT--AAAAAAAGAAACCAAAACAAGACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCTATGCGAGGCATTGGTGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACGCGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGTGGAGCGAGTGCAACCCTGGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCTGGAGCCCACCAACGGCACAGCCGTTGGACTGCAGTCATCCGCCGAGCTGTACTTCCTCAAGGAAGTGATCCACAAAGCACCCTCTCTTGAAGATGGACTAGGCATGCCCGACTGGAAGCTGGCACTGTGCCTGCTGTTCGCGTGGATCGTCGTCGCCACCATCCTGATCCGGGGTGCGAAAAGTACCGGCAAAGCGTCCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATTGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCATTTGGCGTATGTTAGTGGG]
[+] EMBL BM594332 [CCGCCCACGCGTCCGCCCACGCGTCCGCGCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGTAAAAAAAAAGAAACCAAAACAAAACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTATACGATCTGGCACCGGCTATGCGAGGCATTGGTGTGGCGCAAACGATCGCAAT ]
[+] EMBL BM588494 [ CCG GCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGT AAAAAAAGAAACCAAAACAAGACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTTGGCAACATCTGGAAGTTCCCGTACACGGCGCTGAAGCACGGCGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCTATGAGAGGCATTGGTGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACGCGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGTGGAGCG ]
[+] EMBL BM644904 [ ccgggctCGCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGT AAAAAAAGAAACCAAAACAAGACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTTGGCAACATCTGGAAGTTCCCGTACACGGCGCTGAAGCACGGCGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCTATGAGAGGCATTGGT ]
[+] EMBL AGA282560 [ CATCACACTGCAGACGATCAGTGACGACACGAAAACCACGGCCTCGACGCGTGATAAATGGGGTCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAATTCTCGAGCAGGGGGTGTGTGAAGCTGTATGATCTGGCACCGGCTATGCGAGGCATTGGAGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACGTACTACGCGCCGGTGCTGGCCATCACGTTCCGGTACTTTGTGGCATCGTTCAGCAGCACCCTACCGTGGAGCGAGTGCAACCCTGGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCTGGAGC ]
[+] EMBL BX605785 [ GCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACGCGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGTGGAGCGAGTGCAACCCTAGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCTGGAGCCCACCAACGGCACAGCCGTTGGACTGCAGTCATCCGCCGAGCTGTACTTCCTCAAGGAAGTGATCCACAAAGCACCCTCTCTTGAAGATGGACTAGGCATGCCCGACTGGAAGCTGGCACTGTGCCTGCTGTTCGCGTGGATCGTCGTCGCCACCATCCTGATCCGGGGTGCGAAAAGTACCGGCAAAGCGTCCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATTGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCATTTGGCGTATGTTAGTGGG]
consensusID : consensus_6966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[GCCAGAATCCGCACGAGGGCGTCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATCGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCAATTTGGCGTATGTTAGTGGGCAGCCCGACATCCAGAAGCTGGCGCGGGACGGTGCCGGCCTTACCTTCATGACGTACCCGGACGCGATCGCCAAGTTCCAGTTTTTGCCGCAGCTGTTTGCCGCCCTGTTCTTCCTGATGCTGTTCATCGTGGGCGTCGGCAGCAATCTGGGCGTAACGACCAGTATCATTACGGCGATCCGGGACCAGCGGCCCAGCTGCGCCACTGGCAGGTGGTCCTGGGGACCGTCACCGTGGGGTACTTCTTCGGGCTGCTCTACCTAACGCCCGGTGGGTTCGATTTCCTGGACGTGATCGATTACTACGGTGCCAAGTACGTGACGCTTCACGTTTGGCCGTTGCTGGAAGCTCGCTACCGTTGCGTGGGATTTACCGGGGCGTTGGGAATCGGGATCCTGGTCGGCGACANTCCCGGGTTAATGCTNGGGCATCCGAGGACCATCNGGTCCTACTGGGCNGACGTNATGGCTGGAGGACTCTGGNTTTGACACCGGGCGAGGCAACNGCTGTGACAGTTCTNATACTTCAGGCTTT]
[+] EMBL BX467511 [GCCAGAATCCGCACGAGGGCGTCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATCGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCAATTTGGCGTATGTTAGTGGGCAGCCCGACATCCAGAAGCTGGCGCGGGACGGTGCCGGCCTTACCTTCATGACGTACCCGGACGCGATCGCCAAGTTCCAGTTTTTGCCGCAGCTGTTTGCCGCCCTGTTCTTCCTGATGCTGTTCATCGTGGGCGTCGGCAGCAATCTGGGCGTAACGACCAGTATCATTACGGCGATCCGGGACCAGCGGCCCAGCTGCGCCACTGGCAGGTGGTCCTGGGGACCGTCACCGTGGGGTACTTCTTCGGGCTGCTCTACCTAACGCCCGGTGGGTTCGATTTCCTGGACGTGATCGATTACTACGGTGCCAAGTACGTGACGCTTCACGTTTGGCCGTTGCTGGAAGCTCGCTACCGTTGCGTGGGATTTACCGGGGCGTTGGGAATCGGGATCCTGGTCGGCGACANTCCCGGGTTAATGCTNGGGCATCCGAGGACCATCNGGTCCTACTGGGCNGACGTNATGGCTGGAGGACTCTGGNTTTGACACCGGGCGAGGCAACNGCTGTGACAGTTCTNATACTTCAGGCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6966#0 CCGCCCACGCGTCCGCCCACGCGTCCGCGCGATCGAGACAGCATCTCATCTCGCTGGGGG 60
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 CTCGCGAACTGCACCGCGATAGTAAAAAAAGAAACCAAAACAAGACCTAAGTGACACACA 120
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 GTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGG 180
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 TGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGA 240
consensus_6966#1 -----------------------------------------GCCAGAATCCGCACGAGGG 19
* * ** ** * **
consensus_6966#0 CAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCG 300
consensus_6966#1 CGTCTACTTTCTGGCCATCTTCCCGTACGT---GATCATCATCATACTGCTGCTGCAAAC 76
* * * ** * * ** * * ** ** * * *** *
consensus_6966#0 ATGAATTCCAG-CATCACGCTGCAGACGATCAGTGACGACACGAAAAC-CAC--GACCTC 356
consensus_6966#1 GCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAA 136
** * ** * ** ***** *** ** ** * * * ** * *
consensus_6966#0 GACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGT 416
consensus_6966#1 GCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGT 196
* ** * ** ** ** * *** ** ** ** * * ** ******
consensus_6966#0 CGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTT 476
consensus_6966#1 CTGTTACGGTGGCATCATCGCGTACTCGTCCTT--CAAC-AACTTCAGCAACAATGTGCA 253
* * * *** **** ** * *** * ** ** * * * ** *
consensus_6966#0 CC-TGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAG- 534
consensus_6966#1 CCGTGACGCCGT-CATTATCTCCTGGCTCGACACCTTCACCTCGATC-GTGGCCGGTTGC 311
** ** ***** * * *** * ** * ***** ** * *
consensus_6966#0 ATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCT 594
consensus_6966#1 ATCGTGTTCGG--GGTGATCGGCAATTTGGCGTATGTTAGTGGGCAGCCCGACATCCAGA 369
** * * ** ** *** * ** ** ** ** * * * ** *
consensus_6966#0 ATGCGAGGCAT--TGGTGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACG 652
consensus_6966#1 AGCTGGCGCGGGACGGTGCCGGCCTTACCTTCATGACGTACCCGGACGCGAT-CGCCAAG 428
* * ** **** * * ** ** * ** * ** ** * * *
consensus_6966#0 CGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGT 712
consensus_6966#1 TTCCAGTTTTTGCCGCAGCTGTTTGCCGCCCTGT----TCTTCCTGATGCTGTTCATCGT 484
** ** * *** * * * *** ** * * * ** ***
consensus_6966#0 GGAG--CGAGTGCAACCCTGGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCT 770
consensus_6966#1 GGGCGTCGGCAGCAATCTGGGCGTAACGACCAGTATCATTACGGCGATCCGGGACCAGC- 543
** ** **** * *** * * * ** *** * * ** ** ** * **
consensus_6966#0 GGAGCCCACCAACGGCACAGCC--GTTGGACTGCAGTCATCCGCCGAGCTGTACTTCCTC 828
consensus_6966#1 --GGCCCAGCTGCGCCACTGGCAGGTGGTCCTGGGGACCGTCACCGTGGGGTACTTCTTC 601
***** * ** *** * * ** * *** * * * *** * ******* **
consensus_6966#0 AAGGAAGTGATCCACAAAGCACCCTCTCTTGAAGATGGACTAGGCATGCCCGACTGGAAG 888
consensus_6966#1 GGGC---TGCTCTACCTAACGCCCGGTGGGTTCGATTTCCTGGACGTGATCGATTACTAC 658
* ** ** ** * * *** * *** ** * * ** *** * *
consensus_6966#0 CTGGCACTGTGCCTGCTGTTCGCGTGGATCGTCGTCGCCACCATCCTGAT-CCGGGGTGC 947
consensus_6966#1 GGTGCCAAGTACGTGACGCTT-CACGTTTGGCCGTTGCTGGAAGCTCGCTACCGTTGCGT 717
** ** * ** * * * * * * *** ** * * * * *** * *
consensus_6966#0 GAAAAGTACCGGCAAAGCGTCCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCAT 1007
consensus_6966#1 GGGATTTACCGG---GGCGT---------TGGGAATCGG---GATCCTGGTCGGCGACAN 762
* * ****** **** *** *** * * ** ** * **
consensus_6966#0 ACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCAC 1067
consensus_6966#1 TCCCGGGTT---AATGCTNGGGCATCCGAGGACCAT-CNGGTCCTACTGGGCNG-ACGTN 817
* * * ** *** ** ** * ** * ** * * *** * *
consensus_6966#0 ACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTAC-GCAGTGCT 1126
consensus_6966#1 ATGGCTGGAGGACTCTGGNTTTGACACCG-GGCGAGGCA-ACNGCTGTGACAGTTCTNAT 875
* ** * **** * ** ** ** ** * ** ** ** * * *
consensus_6966#0 TCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCA 1186
consensus_6966#1 ACTTCAGGCTTT------------------------------------------------ 887
*** *** *
consensus_6966#0 GCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATTG 1246
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 TGGCCGGTTGCATCGTGTTCGGGGTGATCGGCATTTGGCGTATGTTAGTGGG 1298
consensus_6966#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||