cluster # 697

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Anopheles gambiae
cluster # 697 cluster # 697 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_697#0 length = 666 sequences # 1

consensus_697#1 length = 499 sequences # 1

consensusID : consensus_697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAACTGTGTGACCATTGCGAACAGGGCAAAACCCCTGTTGCTAGAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCTCGAAAGCGTGCGAAGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAACCGTAGCTACCGTCAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTCAATATACTTCACAATGGGCGAGCTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTGTCTGGTTGGAGCTTCCGGCTACCTCTTTCCCGAGAGAGCATCTGAGCTTGAAGCGTTAGATAAGCTCGTACCAAATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCACGGAGGATTCGCTTTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAGCCACACGGTACGAGTACAGTACGGAGAGGTGACTTGTGTCGGCCTGATCGTGGACGAATCGCACGTTCTAACTACGGCGGACTGTACGTCGTCGGAGGAGGGCACGCTGCCAGAGATTAAACTTACCAATGAAACACTGCCCTTGATTAGCGCGATCGAACAGTTTCCTCACCCCGAGTATAATGTAACGCTGCTTCGG]

[+] EMBL BM619472             [CCGCCCACGCGTCCGCCCACGCGTCCGGAACTGTGTGACCATTGCGAACAGGGCAAAACCCCTGTTGCTAGAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCTCGAAAGCGTGCGAAGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAACCGTAGCTACCGTCAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTCAATATACTTCACAATGGGCGAGCTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTGTCTGGTTGGAGCTTCCGGCTACCTCTTTCCCGAGAGAGCATCTGAGCTTGAAGCGTTAGATAAGCTCGTACCAAATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCACGGAGGATTCGCTTTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAGCCACACGGTACGAGTACAGTACGGAGAGGTGACTTGTGTCGGCCTGATCGTGGACGAATCGCACGTTCTAACTACGGCGGACTGTACGTCGTCGGAGGAGGGCACGCTGCCAGAGATTAAACTTACCAATGAAACACTGCCCTTGATTAGCGCGATCGAACAGTTTCCTCACCCCGAGTATAATGTAACGCTGCTTCGG]




>consensus_697#0
CCGCCCACGCGTCCGCCCACGCGTCCGGAACTGTGTGACCATTGCGAACAGGGCAAAACC
CCTGTTGCTAGAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCTCGAAAGCGTGCGA
AGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAACCGTAGCTACCGT
CAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTCAATATACTTCACAATGGGCGAG
CTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTGTCTGGTTGGAGCT
TCCGGCTACCTCTTTCCCGAGAGAGCATCTGAGCTTGAAGCGTTAGATAAGCTCGTACCA
AATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCACGGAGGATTCGCT
TTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAGCCACACGGTACGA
GTACAGTACGGAGAGGTGACTTGTGTCGGCCTGATCGTGGACGAATCGCACGTTCTAACT
ACGGCGGACTGTACGTCGTCGGAGGAGGGCACGCTGCCAGAGATTAAACTTACCAATGAA
ACACTGCCCTTGATTAGCGCGATCGAACAGTTTCCTCACCCCGAGTATAATGTAACGCTG
CTTCGG

consensusID : consensus_697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [CCGCCCACGCGTCCGGCTCGTCTCGCGGCAATGTGGTGGTGAACTGTGTGACCACAGCGAACAGGGCAAAACCCCTGTTGCTAAAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCTCGAAAGCGTGCGAAGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAACCGTAGCTACCGTCAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTGAATATACTTCACAATGGGCGAGCTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTGTCTGGTTGGAGCTTCCGGCTACCTCTTTCCCGGAGAGCATCTGAGCTTGAAGCGTTAGATAAGCTCGTACCAAATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCACGGAGGATTCGCTTTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAGCCACACGGTACGAGTACAGT]

[+] EMBL BM647981             [CCGCCCACGCGTCCGGCTCGTCTCGCGGCAATGTGGTGGTGAACTGTGTGACCACAGCGAACAGGGCAAAACCCCTGTTGCTAAAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCTCGAAAGCGTGCGAAGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAACCGTAGCTACCGTCAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTGAATATACTTCACAATGGGCGAGCTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTGTCTGGTTGGAGCTTCCGGCTACCTCTTTCCCGGAGAGCATCTGAGCTTGAAGCGTTAGATAAGCTCGTACCAAATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCACGGAGGATTCGCTTTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAGCCACACGGTACGAGTACAGT]




>consensus_697#1
CCGCCCACGCGTCCGGCTCGTCTCGCGGCAATGTGGTGGTGAACTGTGTGACCACAGCGA
ACAGGGCAAAACCCCTGTTGCTAAAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCT
CGAAAGCGTGCGAAGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAA
CCGTAGCTACCGTCAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTGAATATACTT
CACAATGGGCGAGCTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTG
TCTGGTTGGAGCTTCCGGCTACCTCTTTCCCGGAGAGCATCTGAGCTTGAAGCGTTAGAT
AAGCTCGTACCAAATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCAC
GGAGGATTCGCTTTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAGC
CACACGGTACGAGTACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_697#0      CCGCCCACGCGTCCGCC----CACGCGTCCG---------GAACTGTGTGACCATTGCGA 47
consensus_697#1      CCGCCCACGCGTCCGGCTCGTCTCGCGGCAATGTGGTGGTGAACTGTGTGACCACAGCGA 60
                     *************** *    * **** *           **************  ****

consensus_697#0      ACAGGGCAAAACCCCTGTTGCTAGAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCT 107
consensus_697#1      ACAGGGCAAAACCCCTGTTGCTAAAAATACCCAAGATCAGGTTTTTTCTTAAAAACTGCT 120
                     *********************** ************************************

consensus_697#0      CGAAAGCGTGCGAAGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAA 167
consensus_697#1      CGAAAGCGTGCGAAGGTGCTAATCTCGTATTTAAAGGAACCTCTGGCAGTCTGCCGGTAA 180
                     ************************************************************

consensus_697#0      CCGTAGCTACCGTCAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTCAATATACTT 227
consensus_697#1      CCGTAGCTACCGTCAGTTGTTTGCGGGATCATATTGATTTTGTCGATCTTGAATATACTT 240
                     ************************************************** *********

consensus_697#0      CACAATGGGCGAGCTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTG 287
consensus_697#1      CACAATGGGCGAGCTTCGATGCCATTCCACAGTGTATCGTGCCATAGCAGTGGTGTGTTG 300
                     ************************************************************

consensus_697#0      TCTGGTTGGAGCTTCCGGCTACCTCTTTCCCGAGAGAGCATCTGAGCTTGAAGCGTTAGA 347
consensus_697#1      TCTGGTTGGAGCTTCCGGCTACCTCTTTCCCG-GAGAGCATCTGAGCTTGAAGCGTTAGA 359
                     ******************************** ***************************

consensus_697#0      TAAGCTCGTACCAAATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCA 407
consensus_697#1      TAAGCTCGTACCAAATGTGGAACGCAGTGTTAAAGATTGTCCATACACCATCTACCAGCA 419
                     ************************************************************

consensus_697#0      CGGAGGATTCGCTTTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAG 467
consensus_697#1      CGGAGGATTCGCTTTGGCCAGCTCAATATTCGTCGATCGTTACGTTGACAAAACGTACAG 479
                     ************************************************************

consensus_697#0      CCACACGGTACGAGTACAGTACGGAGAGGTGACTTGTGTCGGCCTGATCGTGGACGAATC 527
consensus_697#1      CCACACGGTACGAGTACAGT---------------------------------------- 499
                     ********************                                        

consensus_697#0      GCACGTTCTAACTACGGCGGACTGTACGTCGTCGGAGGAGGGCACGCTGCCAGAGATTAA 587
consensus_697#1      ------------------------------------------------------------
                                                                                 

consensus_697#0      ACTTACCAATGAAACACTGCCCTTGATTAGCGCGATCGAACAGTTTCCTCACCCCGAGTA 647
consensus_697#1      ------------------------------------------------------------
                                                                                 

consensus_697#0      TAATGTAACGCTGCTTCGG 666
consensus_697#1      -------------------