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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 752 fasta sequence
[CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACAGTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACC-GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC-TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC-GCAAGCAAAACC-TTGCCCACGTCCTCTTCCCGAACGAGATCAACA-TCTACGCGAACGTGCTGCCCCA-GTTTGATGCGTTTCTCGCCGAAGCTGGCTC-GGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA-GCACGA-TGGGCCAGTTCCGCGAGTACAG-CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA-TGGTGGAGA-TCA-TC-GCCCGCTATCACGC-TTGGC-TC-GTACGCGC-TGCGCATCTCGAAGGAGGACGCCGGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTTGNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA]
[+] EMBL BM639151 [CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACAGTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACGCGGCTCGTGCAGCAGGTGCTGACCAGCCACGAATGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACCCC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGA ATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCGAACGTGCTGCCCCA GTTTGATGCGTTTCTCGCCGAAGCTGGCTC GGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA GCACGA TGGGCCAGTTCCGCGAGTACAG CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGAGGTTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA TGGGGGAGA TCA TC GCCCGCTATCACGC TTG ]
[+] EMBL BM620889 [ ccgATATATCGTTCATTTCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCGAACGTGCTGCCGCA GTTTGATGCGTTTCTCGCCGCAGCTGGTTC GGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA GCACGA TGGGCCAGTTCCGCGAGTACAG CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA TGGTGGAGA TCA TC GCCCGCTATCACGC TT GC TC GTACGCGC TGCGCATC ]
[+] EMBL BX469226 [ cagAGTCGC C A CGAGGTTAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACCTGAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCGTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCTGCAAGCAAAACCGTTGCCCACGTCCTCTTCCCGAACGAGATCAACAGTCTACGCGAACGTGCTGCCGCAGGTTTGATGCGTTTCTCGCCGCAGCTGGTTCAGGACCTCCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGGCACGAGTGGGCCAGTTCCGCGAGTACAGNNGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGNGGNTAGATCTGGACGAGGCACATCTGACGCTGAGTGGTGGAGATTCAGTCGGCCGGTTATCACGCGTTGGCGTCGGTACGCGCTTGCGCAAGTCGAAGGAGGACGCCGGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTTGNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA]
[+] EMBL AGA281945 [ CTGCACACACC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACACTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCAAACGTGCTGCCCCA GTTTGATGCATTTCTCGCCGAAGCTGGCTC GGAGCTGCGGGCAACGCGCTGGTGCCCCCGG ]
consensusID : consensus_6977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence
[CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTTTGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAATTTCTGCACCGTGATC]
[+] EMBL BM577405 [CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTTTGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAA ]
[+] EMBL BM629315 [ ccgGCGCCACAGTGCAAGTGGGGA ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCCCAGTTTGATGCGTTTCTCGCCGAAGCTGGCTCGGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGAGGTTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGAGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGGCTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAATTTCTGCACCGTGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6977#0 CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACA 60
consensus_6977#1 ------------------------------------------------------------
consensus_6977#0 GTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGAT 120
consensus_6977#1 ------------------------------------------------------------
consensus_6977#0 GGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGA 180
consensus_6977#1 ------------------------------------------------------------
consensus_6977#0 AAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACCGAAACATCTCGACGG 240
consensus_6977#1 ------------------------------------------------------------
consensus_6977#0 GTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAAC 300
consensus_6977#1 ---CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAAC 57
* ******************************************************
consensus_6977#0 ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAA 360
consensus_6977#1 ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAA 117
************************************************************
consensus_6977#0 CCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCCCAGTT 420
consensus_6977#1 CCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTT 177
****************************************************** *****
consensus_6977#0 TGATGCGTTTCTCGCCGAAGCTGGCTCGGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGT 480
consensus_6977#1 TGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGT 237
***************** ****** ***** *****************************
consensus_6977#0 GTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGT 540
consensus_6977#1 GTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGT 297
************************************************************
consensus_6977#0 GATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGC 600
consensus_6977#1 GATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGC 357
************************************************************
consensus_6977#0 ACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGGCTCGTACGCGCTGC 660
consensus_6977#1 ACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTG-CTCGTACGCGCTGC 416
********************************************* **************
consensus_6977#0 GCATCTCGAAGGAGGACGCC--GGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTT 718
consensus_6977#1 GCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGC--GCATTGTGCCGTTGAACTT 474
***** * * **** ******* * ** ** * *** * * **
consensus_6977#0 GNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA-------------------------- 752
consensus_6977#1 CCTGCAGGATGGGAAGGTATTT-TTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGG 533
*** ** * ** ** * ** *
consensus_6977#0 ------------------------------------------------------------
consensus_6977#1 AGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGC 593
consensus_6977#0 ------------------------------------------------------------
consensus_6977#1 AGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAAT 653
consensus_6977#0 ---------------
consensus_6977#1 TTCTGCACCGTGATC 668
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||