cluster # 6978

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Anopheles gambiae
cluster # 6978 cluster # 6978 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6978#0 length = 509 sequences # 1

consensus_6978#1 length = 506 sequences # 4
consensus_6978#2 length = 430 sequences # 1

consensusID : consensus_6978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [AGGAGGGGCGTAGGTGCGAGTAACGCGGNAACTGATCAAACGCAAGTGCTAAAGTCTGTACGTGTATCTGTGTACGTGTGAGTGTATTATAGAATCGGCGTCAAAGGAGGTGCGAGTGCGTCGCGCAAAGAAAAACAGTTTGTAAAAAGGAAATCCGCTACCCCTCCCGCACACACTCTTAATCAAATCTTAAGTTTAGCTCCCCTGTACATTGTACGCGCGTTAGATTCGCGTTTTTTTGTGTATATTTGTTTTTCTTTCTCCTCTAGTTCGNCGCTTAACGCGCCTACCCAATTAAGCCTGTATGTATGTGTTCGTTATTGCAAAAAAACAAAAGCGGCAGTTAAAGTGTAATTTAATTTAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGTCACTCTCGGTTTTGCACAACCCGTTCGCTGCCGTCGCTCGCTCTCACAACAGTCATCTCTTAAAGTATTACTAGGTAGGGAAAGGTTAA]

[+] EMBL BX625446             [AGGAGGGGCGTAGGTGCGAGTAACGCGGNAACTGATCAAACGCAAGTGCTAAAGTCTGTACGTGTATCTGTGTACGTGTGAGTGTATTATAGAATCGGCGTCAAAGGAGGTGCGAGTGCGTCGCGCAAAGAAAAACAGTTTGTAAAAAGGAAATCCGCTACCCCTCCCGCACACACTCTTAATCAAATCTTAAGTTTAGCTCCCCTGTACATTGTACGCGCGTTAGATTCGCGTTTTTTTGTGTATATTTGTTTTTCTTTCTCCTCTAGTTCGNCGCTTAACGCGCCTACCCAATTAAGCCTGTATGTATGTGTTCGTTATTGCAAAAAAACAAAAGCGGCAGTTAAAGTGTAATTTAATTTAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGTCACTCTCGGTTTTGCACAACCCGTTCGCTGCCGTCGCTCGCTCTCACAACAGTCATCTCTTAAAGTATTACTAGGTAGGGAAAGGTTAA]




>consensus_6978#0
AGGAGGGGCGTAGGTGCGAGTAACGCGGNAACTGATCAAACGCAAGTGCTAAAGTCTGTA
CGTGTATCTGTGTACGTGTGAGTGTATTATAGAATCGGCGTCAAAGGAGGTGCGAGTGCG
TCGCGCAAAGAAAAACAGTTTGTAAAAAGGAAATCCGCTACCCCTCCCGCACACACTCTT
AATCAAATCTTAAGTTTAGCTCCCCTGTACATTGTACGCGCGTTAGATTCGCGTTTTTTT
GTGTATATTTGTTTTTCTTTCTCCTCTAGTTCGNCGCTTAACGCGCCTACCCAATTAAGC
CTGTATGTATGTGTTCGTTATTGCAAAAAAACAAAAGCGGCAGTTAAAGTGTAATTTAAT
TTAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGT
CACTCTCGGTTTTGCACAACCCGTTCGCTGCCGTCGCTCGCTCTCACAACAGTCATCTCT
TAAAGTATTACTAGGTAGGGAAAGGTTAA

consensusID : consensus_6978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 506
fasta sequence

                              [AAAAGTTTTATCCTTCTTTCGCTTTATTTCAACGACCGGGTGAGTTTTGTCACTTTGTCGGTGTTTAGTTTTTGAGCCTTCGCAACACACATTTTCCACATAATTTACCGTTAATCTAGCT--GAGAGAGAGAAAAACTAAACTGAACTAAGACCTGTGCGCCTCTCATGGTTCTTCTGGTTATCCATTTTTGTAATTTTCAATATGCCTTCCTAGTTTTGGGGTTTGGTGTACGTAGTTCTATTTACTTCAAGGGCGTGTTTCCCTCAAAACCACTGTTCCACTTCCACT-GCCACGCTGCGCTACCGATGATTACATTT-AAAACTTATTAAATACGATATCACAAATAGTTTTTCCTCCTTTTTCACCAATTTCCCTCTCTCCCTACTCTCACAAAACGTCAGCCAGAGAGAGACCTCTCTCACGCCAACCTGCTGCGCCTAGCCGGCCACTCGCGCTGTTGTGGCTGTTCGATTTATCTTTTTCAGTTCACCGGACGCGTGGGCGG]

[-] EMBL BM644133             [AAAAGTTTTATCCTTCTTTCGCTTTATTTCAACGACCGGGTGAGTTTTGTCACTTTGTCGGTGTTTAGTTTTTGAGCCTTCGCAACACACATTTTCCACATAATTTACCGTTAATCTAGCTGAGAGAGAGAGAAAAACTAAACTGAACTAAGACCTGTGCGCCTCTCATGGTTCTTCTGGTTATCCATTTTTGTAATTTTCAATATGCCTTCCTAGTTTTGGGGTTTGGTGTACGTAGTTCTATTTACTTCAAGGGCGTGTTTCCCTCAAAACCACTCTTCCACTTCCACT GCCACGCTGCGCTACCGATGATTACATTT AAAACTTATTAAATACGATATCACAAATAGTTTTTCCTCCTTTTTCACCAATTTCCCTCTCTCCCTACTCTCACAAAACGTCAGCCAGAGAGGGACCTCTCTCTCGCCAACCTGCTGCGCCTAGCCGGCCACTCGCGCTGTTGTGGCTGTTCGATTTATCTTTTTCAGTTCACCGGACGCGTGGGCGG]
[+] EMBL AGA281924            [                                      GGCGAGTTTTGTCACTTTGTCGGTGTTTAGTTTTTGAGCCTTCGCAACACACATTTTCCACATAATTTACCGTTAATCTAGCT  GAGAGAGAGAAAAACTAAACTGAACTAAGACCTGTGCGCCTCTCATGGTTCTTCTGGTTATCCATTTTTGTAATTTTCAATATGCCTTCCTAGTTTTGGGGTTTGGTGTACGTAGTTCTATTTACTTCAAGGGCGTGTTTCCCTCAAAACCACTGTTCCACTTCCACT GCCACGCTGCGCTACCGATGATTACATTT AAAACTTATTAAATACGATATCACAAATAGTTTTTCCTCCTTTTTCACCAATTTCCCTCTCTCCCTACTCTCACAAAACGTCAGCCAGAGAGAGACCTCTCTCACGCC                                                                                ]
[+] EMBL AGA282338            [                                          AGTTTTGTCACTTTGTCGGCGTTTAGTTTTTGAGCCTTCGCAACACACATTTTCCACATAATTTACCGTTAATCTAGCT  GAGAGAGAGAAAAACTAAACTGAACTAAGACCTGTGCGCCTCTCATGGTTCTTCTGGTTATCCATTTTTGTAATTTTCAATATGCCTTCCTAGTTTTGGGGTTTGGTGTACGTAGTTCTATTTACTTCAAGGGCGTGTTTCCCTCAAAACCACTGTTCCACTTCCACT GCCACGCTGCGCTACCGATGATTACATTT AAAACTTATTAAATACGATATCACAAATAGTTTTTCCTCCTTTTTCACCAATTTCCCTCTCTCCCTAATCTCACAAAACGTCAGGCAGAGAGAGACCTCTCTCACGCCAACCTACTGCGCCTAGCCGGGCACTCcc                                                    ]
[+] EMBL AGA282887            [                                                                                                                                                     AAGACCTGTGCGCCTCTCATGGTTSTGCTGGTTATCCATTTGGGTAATTGTSAATATGCCTTCCTAGTTGGGGGGTTT GTGTACGTAGTTCTATTTACTTCAAGGGCGTGTTTCCCTCAAAACCACTGTTCCACTTCCACTGGCCACGCTGCGCTACCGATGATTACATTTGAAAACTTATTAAATACGAT                                                                                                                                                                         ]




>consensus_6978#1
AAAAGTTTTATCCTTCTTTCGCTTTATTTCAACGACCGGGTGAGTTTTGTCACTTTGTCG
GTGTTTAGTTTTTGAGCCTTCGCAACACACATTTTCCACATAATTTACCGTTAATCTAGC
TGAGAGAGAGAAAAACTAAACTGAACTAAGACCTGTGCGCCTCTCATGGTTCTTCTGGTT
ATCCATTTTTGTAATTTTCAATATGCCTTCCTAGTTTTGGGGTTTGGTGTACGTAGTTCT
ATTTACTTCAAGGGCGTGTTTCCCTCAAAACCACTGTTCCACTTCCACTGCCACGCTGCG
CTACCGATGATTACATTTAAAACTTATTAAATACGATATCACAAATAGTTTTTCCTCCTT
TTTCACCAATTTCCCTCTCTCCCTACTCTCACAAAACGTCAGCCAGAGAGAGACCTCTCT
CACGCCAACCTGCTGCGCCTAGCCGGCCACTCGCGCTGTTGTGGCTGTTCGATTTATCTT
TTTCAGTTCACCGGACGCGTGGGCGG

consensusID : consensus_6978#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [ATCGCCCGAGGTTGTTTNCTTTCTCCTCTACTCGTCGCTTACGCGCCTACCCAATCAGCCTGTATGTATGTGTTCGTTATTGCAAAAAAGTTAAAGCGGCAGTTAAAGTGTAATTTAATTTAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGTCACTCTCGCGTTTTGCACAACCCGTTCGCTGCCGTCTCTCGCTCTCACAACAGTCATCTCTTAAAGTATTACTAGTAGGGAAAGGTTAAATAAAGTACGGAGAAAATACTGGCCGGCCGGCCGGGGTCGATGGTGAACTGAAAAAGATAAATCGAACAGCCACAACAGCGCGAGTGGCCGGCTAGGCGCAGTAGGTTGGCGAGAGAGAGGTCCCTCTCTGGCTGACGTTTTGTGAGAGTAGGGAGAGAGGG]

[+] EMBL AL934913             [ATCGCCCGAGGTTGTTTNCTTTCTCCTCTACTCGTCGCTTACGCGCCTACCCAATCAGCCTGTATGTATGTGTTCGTTATTGCAAAAAAGTTAAAGCGGCAGTTAAAGTGTAATTTAATTTAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGTCACTCTCGCGTTTTGCACAACCCGTTCGCTGCCGTCTCTCGCTCTCACAACAGTCATCTCTTAAAGTATTACTAGTAGGGAAAGGTTAAATAAAGTACGGAGAAAATACTGGCCGGCCGGCCGGGGTCGATGGTGAACTGAAAAAGATAAATCGAACAGCCACAACAGCGCGAGTGGCCGGCTAGGCGCAGTAGGTTGGCGAGAGAGAGGTCCCTCTCTGGCTGACGTTTTGTGAGAGTAGGGAGAGAGGG]




>consensus_6978#2
ATCGCCCGAGGTTGTTTNCTTTCTCCTCTACTCGTCGCTTACGCGCCTACCCAATCAGCC
TGTATGTATGTGTTCGTTATTGCAAAAAAGTTAAAGCGGCAGTTAAAGTGTAATTTAATT
TAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGTC
ACTCTCGCGTTTTGCACAACCCGTTCGCTGCCGTCTCTCGCTCTCACAACAGTCATCTCT
TAAAGTATTACTAGTAGGGAAAGGTTAAATAAAGTACGGAGAAAATACTGGCCGGCCGGC
CGGGGTCGATGGTGAACTGAAAAAGATAAATCGAACAGCCACAACAGCGCGAGTGGCCGG
CTAGGCGCAGTAGGTTGGCGAGAGAGAGGTCCCTCTCTGGCTGACGTTTTGTGAGAGTAG
GGAGAGAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6978#0      AGGAGGGGCGTAGGTGCGAGTAACGCGGNAACTGATCAAACGCAAGTGCTAAAGTCTGTA 60
consensus_6978#2      ------------------------------------------------------------
consensus_6978#1      ------------------------------------------------------------
                                                                                  

consensus_6978#0      CGTGTATCTGTGTACGTGTGAGTGTATTATAGAATCGGCGTCAAAGGAGGTGCGAGTGCG 120
consensus_6978#2      ------------------------------------------------------------
consensus_6978#1      ------------------------------------------------------------
                                                                                  

consensus_6978#0      TCGCGCAAAGAAAAACAGTTTGTAAAAAGGAAATCCGCTACCCCTCCCGCACACACTCTT 180
consensus_6978#2      ------------------------------------------------------------
consensus_6978#1      ------------------------------AAAAGTTTTATCCTTCTTTCGCTTTATTTC 30
                                                                                  

consensus_6978#0      AATCAAATCTTAAGTTTAGCTCCCCTGTACATTGTACGCGCGTTAGATTCGCGTTTTTTT 240
consensus_6978#2      ---------------------------------------------------------ATC 3
consensus_6978#1      AACGACCGGGTGAGTTTTGTCACTTTGTCGGTGTTTAGTTTTTGAGCCT----TCGCAAC 86
                                                                                  

consensus_6978#0      GTGTATATTTGTTTTTCTTTCTCCTCTAGTTCGNCGCTTAACGCGCCTACCCAATTAAGC 300
consensus_6978#2      GCCCGAGGTTGTTTN-CTTTCTCCTCTA-CTCGTCGCTTA-CGCGCCTACCCAATCA-GC 59
consensus_6978#1      ACACATTTTCCACATAATTTACCGTTAATCTAGCTGAGAGAGAGAAAAACTAAACTGAAC 146
                              *        ***  * *  *  * *  *            **  **     *

consensus_6978#0      CTGTATGTATGTGTTCGTTATTGCAAAAAAACAAAAGCGGCAGTTAAAGTGTAATTTAAT 360
consensus_6978#2      CTGTATGTATGTGTTCGTTATTGCAAAAAAGTTAAAGCGGCAGTTAAAGTGTAATTTAAT 119
consensus_6978#1      TAAGACCTGTGCGCCTCTCATGGTTCTTCTGGTTATCCATTTTTGTAATTTTCAATATGC 206
                          *  * ** *    * ** *           *  *     *  ** * * * *    

consensus_6978#0      TTAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGT 420
consensus_6978#2      TTAATTTGCTCGAGAATCCGGAAGGTGCGACGCGTGTGCGAAGTGACGACGAACCCCGGT 179
consensus_6978#1      CTTCCTAGTTTTGGGGTTTGGTGTACGTAGTTC-TATTTACTTCAAGGGCGTGTTTCCCT 265
                       *   * * *   *  *  **     *     * * *        * * **     *  *

consensus_6978#0      CACTCTCG-GTTTTGCACAACCCGTTCGCTGCCGTCGCTCGCTCTCACAACAGTCATCTC 479
consensus_6978#2      CACTCTCGCGTTTTGCACAACCCGTTCGCTGCCGTCTCTCGCTCTCACAACAGTCATCTC 239
consensus_6978#1      CAAAACCA-CTGTTCCACTTCCACTGCCACGCTG-CGCTACCGATGATTACATTTAAAAC 323
                      **    *   * ** ***  **  * *   ** * * **  *  * *  *** * *   *

consensus_6978#0      TTA--AAGTATTACTAGGTAGGGAAAGGTTAA---------------------------- 509
consensus_6978#2      TTA--AAGTATTACTAG-TAGGGAAAGGTTAAATAAAGTACGGAGAAAATACTGGCCGGC 296
consensus_6978#1      TTATTAAATACGATATCACAAATAGTTTTTCCTCCTTTTTCACCAATTTCCCTCTCTCCC 383
                      ***  ** **  *      *   *    **                              

consensus_6978#0      ------------------------------------------------------------
consensus_6978#2      CGGCCGGGGTCGATGGTGAACTGAAAAAGATAAATCGAACAGCCACAACAGCGCGAGTGG 356
consensus_6978#1      TACTCTCACAAAACGTCAGCCAGAGAGAGACCTCTCTCAC-GCCAACCTGCTGCGCCTAG 442
                                                                                  

consensus_6978#0      ------------------------------------------------------------
consensus_6978#2      CCGGCTAGGCGCAGTAGGTTGGCGAGAGAGAGGTCCCTCTCTGGCTGACGTTTTGTGAGA 416
consensus_6978#1      CCGGCCACTCGCGCTGTTGTGGCTGTTCGATTTATCTTTTTCAGTTCACCGGACGCGTGG 502
                                                                                  

consensus_6978#0      --------------
consensus_6978#2      GTAGGGAGAGAGGG 430
consensus_6978#1      GCGG---------- 506