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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 896 fasta sequence
[CCGCCCACGCGTCCGAAATTGTTGTCTTATATTTACAAAGTTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGTCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGTGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTTCTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAAAACACAAGCTTAACTTTTTGTTACGTACGGCTGGCGCATTGTATAGGTTGTAAAGAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGAAACACAGGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGGCATACGGTTGGGGACAATGTGAAACAAGCAACGTGGAAAAGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGANAACGGGTTTGCTGAGAGCGAAAAAAACATNAAAAATCGTGTCANTGAGATTANGAAGAAAAGCAAATCATCGGCACAACATCNGAGATAATTTTCTAT]
[+] EMBL BM588889 [CCGCCCACGCGTCCGAAATTGTTGTCTTATATTTACAAAGTTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGTCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGTGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTTCTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAAAACACAAGCTTAACTTTTTGTTACGTACGGCTGGCGCATTGTATAGGTTGTAAAGAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGAAACACAGGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGGCATACGGTTGGGGACAATGTGAAACAAGCAACGTGGAAAA ]
[+] EMBL BX616759 [ TCTCCTCCCTTTCCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTTCTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAAAACACAAGCTTAACTTTTTGTTACGTACGGCTGGCGCATTGTATAGGTTGTAAAGAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTT ]
[+] EMBL BX625553 [ AGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGGAAAACA GGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTAC GGCATACGGTT GGGACAATGTGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGANAACGGGTTTGCTGAGAGCGAAAAAAACATNAAAAATCGTGTCANTGAGATTANGAAGAAAAGCAAATCATCGGCACAACATCNGAGATAATTTTCTAT]
consensusID : consensus_6985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[CCGTGCTTCCTTTTTGTGTTCACACTTTCATGTTCGTGCTCTCTTTCACTCTTTTCCTGTGTTTCATACTCTTTCTGGTATTCAATTTACTGTACTTGTTCGCTATTTTCTCTATCACGTTTCTGTCTCAACTGAGGAAGAGACTTCTGTTGTTCTCGTTCATCTTATTTTTCATTTGTTTTGTGACACTTATGGTTAGCTTTAGCAAGTAGAGATTTATTAAATACAGAGAGACCAGTTGAGATTGAGATTATAATACAGTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGCCTGACGAACACCGAGGAAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGATGTCTTATATTTACAAAGGTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGGCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGCGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAGCAGTAGAAAACACCCACTCTACCATGAGTTTTGG]
[+] EMBL BM584412 [CCGTGCTTCCTTTTTGTGTTCACACTTTCATGTTCGTGCTCTCTTTCACTCTTTTCCTGTGTTTCATACTCTTTCTGGTATTCAATTTACTGTACTTGTTCGCTATTTTCTCTATCACGTTTCTGTCTCAACTGAGGAAGAGACTTCTGTTGTTCTCGTTCATCTTATTTTTCATTTGTTTTGTGACACTTATGGTTAGCTTTAGCAAGTAGAGATTTATTAAATACAGAGAGACCAGTTGAGATTGAGATTATAATACAGTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGCCTGACGAACACCGAGGAAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGATGTCTTATATTTACAAAGGTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGGCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGCGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAGCAGTAGAAAACACCCACTCTACCATGAGTTTTGG]
consensusID : consensus_6985#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[CAGAATCGGCACAGGGGCTGACGCATTGTATAGGTTGTAAAGCAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGGAAAACAGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGCATACGGTTGGGACAATGTGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGAAAACGGGTTTGCTGAGAGCGAAAAAAACATAAAAAATCGTGTCAGTGAGATTAAGAAGA]
[+] EMBL BX466372 [CAGAATCGGCACAGGGGCTGACGCATTGTATAGGTTGTAAAGCAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGGAAAACAGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGCATACGGTTGGGACAATGTGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGAAAACGGGTTTGCTGAGAGCGAAAAAAACATAAAAAATCGTGTCAGTGAGATTAAGAAGA]
consensusID : consensus_6985#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[CAACTGAATAAGAGACTTCTGTTATTATTTCTTTCATCTTATTTTTCTTTTGTTTTGTTACACTTAGGGTTAGCTTTAGCAAATAGAGATTTATTAAATACAGAGAGACCAATTGAGATTGAGATTATAATACAGTTTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGTCTGACGAACACCGTGGTAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGTTGTCTTAAATTTACAAAGTGGAGCATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTTCGGGCCTTAAAACGTTTTTTTTTTTTTATGGAAGCGTTTCGCTTAANGGTGCAATATCGTTGAGANCAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCTCCTCTCCTCCCNTTTCCCTCTGCAAGAAAAAGTAGAAAACACCCACTC]
[+] EMBL BX624335 [CAACTGAATAAGAGACTTCTGTTATTATTTCTTTCATCTTATTTTTCTTTTGTTTTGTTACACTTAGGGTTAGCTTTAGCAAATAGAGATTTATTAAATACAGAGAGACCAATTGAGATTGAGATTATAATACAGTTTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGTCTGACGAACACCGTGGTAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGTTGTCTTAAATTTACAAAGTGGAGCATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTTCGGGCCTTAAAACGTTTTTTTTTTTTTATGGAAGCGTTTCGCTTAANGGTGCAATATCGTTGAGANCAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCTCCTCTCCTCCCNTTTCCCTCTGCAAGAAAAAGTAGAAAACACCCACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6985#1 ------------------------------------------------------------
consensus_6985#3 ------------------------------------------------------------
consensus_6985#0 CCGCCCACGCGTCCGAAATTGTTGTCTTATATTTACAAAGTTGTTTGATCTTGTTTGATT 60
consensus_6985#2 ------------------------------------------------------------
consensus_6985#1 ------------------------------------------------------------
consensus_6985#3 ------------------------------------------------------------
consensus_6985#0 CTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCC 120
consensus_6985#2 ------------------------------------------------------------
consensus_6985#1 ------------------------------------------------------------
consensus_6985#3 ------------------------------------------------------------
consensus_6985#0 GGGTCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGT 180
consensus_6985#2 ------------------------------------------------------------
consensus_6985#1 ---------------------------------------------------CCGTGCTTC 9
consensus_6985#3 ------------------------------------------------------------
consensus_6985#0 GAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTT 240
consensus_6985#2 ------------------------------------------------------------
consensus_6985#1 CTTTTTGTGTTCACACTTTCATGTTCGTGCTCTCTTTCACTCTTTTCCTGTGTTTCATAC 69
consensus_6985#3 ------------------------------------------------------------
consensus_6985#0 CCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTT 300
consensus_6985#2 ------------------------------------------------------------
consensus_6985#1 TCTTTCTGGTATTCAATTTACTGTACTTGTTCGCTATTTTCTCTATCACGTTTCTGTCTC 129
consensus_6985#3 -----------------------------------------------------------C 1
consensus_6985#0 CTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAA 360
consensus_6985#2 ------------------------------------------------------------
consensus_6985#1 AACTGAGGAAGAGACTTCTGTTGT--TCTCGTTCATCTTATTTTTCATTTGTTTTGTGAC 187
consensus_6985#3 AACTGAATAAGAGACTTCTGTTATTATTTCTTTCATCTTATTTTTCTTTTGTTTTGTTAC 61
consensus_6985#0 AACACAAGCTTAACTTTTTGTTAC-GTACGGCTGGCGCATTGTATAGGTTGTAAAG-AGC 418
consensus_6985#2 --------CAGAA----TCGGCAC-A-GGGGCTGACGCATTGTATAGGTTGTAAAGCAGC 46
* * * * * * **** * *
consensus_6985#1 ACTTATGGTTAGCTTTAGCAAGTAGAGATTT----ATTAAATACAGAGAGACCAGTTGAG 243
consensus_6985#3 ACTTAGGGTTAGCTTTAGCAAATAGAGATTT----ATTAAATACAGAGAGACCAATTGAG 117
consensus_6985#0 GAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATG 478
consensus_6985#2 GAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATG 106
* * ** * * * ** * *** * *** * * *** *
consensus_6985#1 ATTGAGATTATAA-TACAGTTTTTTT--CTTCTTTTTCTTTTTGTTATTATATCGCCTGA 300
consensus_6985#3 ATTGAGATTATAA-TACAGTTTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGTCTGA 176
consensus_6985#0 ATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTT 538
consensus_6985#2 ATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTT 166
** * *** * * ***** ** ** *** * * **** ** * * *
consensus_6985#1 CGAACACCGAGGAAAGACAAAACAAACATGACATCGATTTA-----AGCTAAATTGATGT 355
consensus_6985#3 CGAACACCGTGGTAAGACAAAACAAACATGACATCGATTTA-----AGCTAAATTGTTGT 231
consensus_6985#0 CATTCCCCGGGAAAGGAAAGCAGATGAAACACAGGGGGTTACTACTGCTTCTATCACAGC 598
consensus_6985#2 CATTCCCCGGGAAAGGAAAGCAGATGGAAAACAGGGG-TTACTACTGCTTCTATCACAGC 225
* * *** * * ** * * * * *** * *** * ** *
consensus_6985#1 CTTATATTTACAAAGGTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTT 415
consensus_6985#3 CTTAAATTTACAAAG----TGGAGC-------ATTCTTGTTTGATTAAATCATTCCGTTT 280
consensus_6985#0 ATACCGTCTGCCGTCAGCCTCAGGCGTGT----TGTTTAGACGGTACGGGCATACGGTTG 654
consensus_6985#2 ATACCGTCTGCCGTCAGCCTCAGGCGTGT----TGTTTAGACGGTACGG-CATACGGTTG 280
* * * * * * * ** * * *** * ***
consensus_6985#1 ATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGGCTTAAAACGTTT--------T 467
consensus_6985#3 ATTCCACTGCTGATTTCTTTTACTTCCCCATTTTCGGGCCTTAAAACGTTT--------T 332
consensus_6985#0 GGGACAATG-TGAAACAAGCAACGTGGAAAAGGAAGGATACGAACAGAGTCAGTAATAGC 713
consensus_6985#2 GG-ACAATG-TGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGC 338
** ** *** ** * * ** ** * *
consensus_6985#1 TGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGCGAGAACAGCGAA-TGGA 526
consensus_6985#3 TTTTTTTTTATGGAAGCGTTTCGCTTAANGGTGCAATATCGTTGAGANCAGCGAA-TGGA 391
consensus_6985#0 GGTATGGTAACGGAAGTAGTATGAA-AAAAATGAAAAACAGGGAAACAGAGCGAAACAGA 772
consensus_6985#2 GGTATGGTAACGGAAGTAGTATGAA-AAAAATGAAAAACAGGGAAACAGAGCGAAACAGA 397
* * * * ***** * * ** ** ** * * * ****** **
consensus_6985#1 AATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTT-CCCTCTGCAAGAAGC 585
consensus_6985#3 AATTTCTGTTGTAAGAAGTTTTTCCTTCCTCCTCTCCTCCCNTTTCCCTCTGCAAGAAAA 451
consensus_6985#0 GCGAAACAGAGAAAGAAAGAAAAGANAACGGGTTTGCTGAGAGC-------GAAAAAAAC 825
consensus_6985#2 GCGAAACAGAGAAAGAAAGAAAAGAAAACGGGTTTGCTGAGAGC-------GAAAAAAAC 450
* ***** * * * ** * ** **
consensus_6985#1 AGTAGAAAACACCCACTCTACCATGAGTTTTGG--------------------------- 618
consensus_6985#3 AGTAGAAAACACCCACTC------------------------------------------ 469
consensus_6985#0 ATNAAAAATCGTGTCANTGAGATTANGAAGAAAAGCAAATCATCGGCACAACATCNGAGA 885
consensus_6985#2 ATAAAAAATCGTGTCAGTGAGATTAAGAAGA----------------------------- 481
* * *** *
consensus_6985#1 -----------
consensus_6985#3 -----------
consensus_6985#0 TAATTTTCTAT 896
consensus_6985#2 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||