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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 987 fasta sequence
[CCCGGACGCACCGTCGAAGCTCGGCACGATCTTTTACTGTCGCTCATCTTCCTTGCGCCGTTCATTTTCCGCTCGCAGCGCAACTACCGGGAGGGGCTGCTGCTCGTCACGGGATCGGTGCTGTGTTTGGTTATCTGGACGGTTTGGATTCCGCTCTGCATGTTCGGGTACGAATGGCGGGAAGCGGCCATTTCACTCGGCATGGTTGCCACTGCGCTGGCCGTGCTGGTGGGCATCATGATACCGCGCTGCTTCCTGATGGTGCGCAGCATCGCACGATCGGATCTGGTGCAGGCGCTACCCTCGCTCACGTCGCTCGCCTTTGCCCAAGCAAATCAGTTCATTTCGGACCAGAGTGTCTATGAATGCGTCAATCCGGCAATGCGCCAACGATCACCCACGGACGATAGTTTCGTGATGGATCAGGACCTCGACGAGGCGTACTCGGCAAACAGCGAAATTCCAACGCTACCACTGCGGGGCCAGCGACGCTTACGGCAGGAAAATGGCACCATTACCATGAGCACCAGCAATGGCACGATTGGCGGCAATCATAATGGCACGCTCGTATCACCGATGGATCGACCGGTGGGCAACGTGACCCACATAGCACCCAACTTTTACGGCATCTCCAATCCGTACAGCTGTTCTGACTCGATCACATCCATTTCGCCGAACAAAATTACCCGATTCTAGAGCGTTCTAGCAGAGCTCCGCTACACTTCACAGACTCGGTGCAATCGCATACATTCTAGTCATAAAGAGGAAGC--AAAAAAAAGCCAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTGGTGTTTCTGCGTGGCGCGCGCGTGTGTGTGTTTTTTTTAACTTTCATCACCGTGAGAGACAATGTTTATTTCCATGTACTCAACATCGATATCTTTCGATGTTTTATTCCGTAAGCTTAATGTAAGAATTAATTTATTGTAATGCAAACGAAATAAAATGGACACAC]
[+] EMBL BX617554 [CCCGGACGCACCGTCGAAGCTCGGCACGATCTTTTACTGTCGCTCATCTTCCTTGCGCCGTTCATTTTCCGCTCGCAGCGCAACTACCGGGAGGGGCTGCTGCTCGTCACGGGATCGGTGCTGTGTTTGGTTATCTGGACGGTTTGGATTCCGCTGTGCATGTTCGGGTACGAATGGCGGGAAGCGGCCATTTCACTCGGCATGGTTGCCACTGCGCTGGCCGTGCTGGTGGGCATCATGATACCGCGCTGCTTCCTGATGGTGCGCAGCATCGCACGATCGGATCTGGTGCAGGCGCTACCCTCGCTCACGTCGCTCGCCTTTGCCCAAGCAAATCAGTTCATTTCGGACCAGAGTGTCTATGAATGCGTCAATCCGGCAATGCGCCAACGATCACCCACGGACGATAGTTTCGTGATGGATCAGGACCTCGACG ]
[+] EMBL BX616138 [ GCTCGCAGCGCAACTACCGGGAGGGGCTGCTGCTCGTCACGGGATCGGTGCTGTGTTTGGTTATCTGGACGGTTTGGATTCCGCTCTGCATGTTCGGGTACGAATGGCGGGAAGCGGCCATTTCACTCGGCATGGTTGCCACTGCGCTGGCCGTGCTGGTGGGCATCATGATACCGCGCTGCTTCCTGATGGTGCGCAGCATCGCACGATCGGATCTGGTGCAGGCGCTACCCTCGCTCACGTCGCTCGCCTTTGCCCAAGCAAATCAGTTCATTTCGGACCAGATTGTCTATGAATGCGTCAATCCGGCAATGCGCCAACGATCACCCACGGACGATAGTTTCGTGATGGATCAGGACCTCGACGAGGCGTACTCGGCAAACAGCGAAATTCCAACGCTACCACTGCGGGGCCAGCGACGCTTACGGCAGGAAAATGGCACCATTACCATGAGCACCAGCAATGGCACGATTGGCGGCAATCATAATGGCACGCTCGTATCACCGATGGATCGACCGGTGGGCAACGTGACCCACATAGCACCCAACTTTTACGGCATCTCCAATCCGTACAGCTGTTCTGACTCGATCACATCCATTTCGCCGAACAAAATTACCCGATTCTAGAGCGTTCTAGCAGAGCTCCGCTACACTTCACAGACTCGGTGCAATCGCATACATTCTAGTCATAAAGAGGAAGC AAAAAAAAGCCAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTG ]
[+] EMBL BX617818 [ TCGGTGCTGTGTTTGGTTATCTGGACGGTTTGGATTCCGCTCTGCATGTTCGGGTACGAATGGCGGGAAGCGGCCATTTCACTCGGCATGGTTGCCACTGCGCTGGCCGTGCTGGTGGGCATCATGATACCGCGCTGCTTCCTGATGGTGCGCAGCATTGCACGATCGGATCTGGTGCAGGCGCTACCCTCGCTCACGTCGCTCGCCTTTGCCCAAGCAAATCAGTTCATTTCGGACCAGAGTGTCTATGAATGCGTCAATCCGGCAATGCGCCAACGATCACCCACGGACGATAGTTTCGTGATGGATCAGGACCTCGACGAGGCGTACTCGGCAAACAGCGAAATTCCAACGCTACCACTGCGGGGCCAGCGACGCTTACGGCAGGAAAATGGCACCATTACCATGAGCACCAGCAATGGCACGATTGGCGGCAATCATAATGGCACGCTCGTATCACCGATGGATCGACCGGTGGGCAACGTGACCCACATAGCACCCAACTT ]
[-] EMBL BM640950 [ GACGATAGTTTCGTGATGGATCAGGACCTCGACGAGGCGTACTCGGCAAACAGCGAAATTCCAACGCTACCACTGCGGGGCCAGCGACGCTTGCGGCAGGAAAATGGGACCATTACCATGAGCACCAGCAATGGCACGATTGGCGGCAATCATAATGGCACGCTCGTATCTCCGATGGATCGACCGGTGGGCAACGTGACCCACATAGCACCCAACTTTTACGGCATCTCCAATCCGTACAGCTGTTCTGACTCGATCACATCCATTTCGCCGAACAAAATTACCCGATTCTAGAGCGTTCTAGCAGAGCTCCGCTACACTTCACAGACTCGGTGCAATCGCATACATTCTAGTCATAAAGAGGAAGCAAAAAAAAAAGCCAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTGGTGTTTCTGCGTGGCGCGCGCGTGTGTGTGTTTTTTTTAACTTTCATCACCGTGAGAGACAATGTTTATTTCCATGTACTCAACATCGATATCTTTCGATGTTTTATTCCGTAAGCTTAATGTAAGAATTAATTTATTGTAATGCAAACGAAATAAAATGGACACAC]
consensusID : consensus_6986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 508 fasta sequence
[GCAGTTGCCCAAGNCTTNTAATATTTAACCTCTTCTATCTATAATGGGTATAAGCTTGCGCCTGCNTACATGCTCTGTTTTTTTT-TTTTT-TTTTATGACTAGAATGTATGCGATTGCACCGAGTCTGTGAAGTGTAGCGGAGCTCTGCTAGAACGCTCTAGAATCGGGTAATTTTGTTCGGCGAAATGGATGTGATCGAGTCAGAAAGAGGAAGC-AANATAAAGCCAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTGGTGTTTCTGCGTGGCGCGCGCGTGTGTGTGTTTTTTTAAACTTTCATCACCGTGAGAGACAATGTTTATTTGCCATGTACTCAACATC-GATATCTTTCGATGTTTTATTCCGTAAGCTTAATGTAAGAATTAATTTATTGTAATGCATACGAAATAAAATGGACACACGAAACAAGAACAATGACAACCATAAAAAAGGAGGGNGAANGAAAAAACAGGCATGTTGAACCTCGGGGATTCTTG]
[-] EMBL AL713825 [GCAGTTGCCCAAGNCTTNTAATATTTAACCTCTTCTATCTATAATGGGTATAAGCTTGCGCCTGCNTACATGCTCTGTTTTTTTT TTTTT TTTTATGACTAGAATGTATGCGATTGCACCGAGTCTGTGAAGTGTAGCGGAGCTCTGCTAGAACGCTCTAGAATCGGGTAATTTTGTTCGGCGAAATGGATGTGATCGAGTCAGAAAGAGGAAGC AANATAAAGCCAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTGGTGTTTCTGCGTGGCGCGCGCGTGTGTGTGTTTTTTTAAACTTTCATCACCGTGAGAGACAATGTTTATTTGCCATGTACTCAACATC GATATCTTTCGATGTTTTATTCCGTAAGCTTAATGTAAGAATTAATTTATTGTAATGCATACGAAATAAAATGGACACACGAAACAAGAACAATGACAACCATAAAAAAGGAGGGNGAANGAAAAAACAGGCATGTTGAACCTCGGGGATTCTTG]
[-] EMBL AL933277 [ gcCTGTTTTTTTTGTTTTTCTTTTATGACTAGAATGTATGCGATTGCACCGAGTCTGTGAAGTGTAGCGGAGCTCTGCTAGAACGCTCTAGAATCGGGTAATTTTGTTCGGCGAAATGGATGTGATCGAGTCAGAAAGAGGAAGCAAANA AAAGCCAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTGGTGTTTCTGCGTGGCGCGCGCGTGTGTGTGTTTTTTTAAACTTTCATCACCGTGAGAGACAATGTTTATTT CCATGTACTCAACATCGGATATCTTTCGATGTTTTATTCCGTAAGCTTAATGTAAGAATTAATTTATTGTAATGCATACGAAATAAAATGGACACACG AACAAGAACAATGACAACCATAAAAAA N AAAAAAAAAACAGGCATGTTGCGCCTCGGGGgcgattc]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6986#0 CCCGGACGCACCGTCGAAGCTCGGCACGATCTTTTACTGTCGCTCATCTTCCTTGCGCCG 60
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 TTCATTTTCCGCTCGCAGCGCAACTACCGGGAGGGGCTGCTGCTCGTCACGGGATCGGTG 120
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 CTGTGTTTGGTTATCTGGACGGTTTGGATTCCGCTCTGCATGTTCGGGTACGAATGGCGG 180
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 GAAGCGGCCATTTCACTCGGCATGGTTGCCACTGCGCTGGCCGTGCTGGTGGGCATCATG 240
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 ATACCGCGCTGCTTCCTGATGGTGCGCAGCATCGCACGATCGGATCTGGTGCAGGCGCTA 300
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 CCCTCGCTCACGTCGCTCGCCTTTGCCCAAGCAAATCAGTTCATTTCGGACCAGAGTGTC 360
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 TATGAATGCGTCAATCCGGCAATGCGCCAACGATCACCCACGGACGATAGTTTCGTGATG 420
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 GATCAGGACCTCGACGAGGCGTACTCGGCAAACAGCGAAATTCCAACGCTACCACTGCGG 480
consensus_6986#1 ------------------------------------------------------------
consensus_6986#0 GGCCAGCGACGCTTACGGCAGGAAAATGGCACCATTACCATGAGCACCAGCAATGGCACG 540
consensus_6986#1 -------------------------------------------------GCAGTTGCCCA 11
*** * ** *
consensus_6986#0 ATTGGCGGCAATCATAATGGCACGCTCGTATCACCGATGGATCGACCGGTGGGCAACGTG 600
consensus_6986#1 A--GNC--TTNTAATATTTAACCTCTTCTATCTATAATGGGTATAAGCTTGCGC----CT 63
* * * * *** * * ** **** **** * * ** **
consensus_6986#0 ACCCACATAGCACCCAACTTTTACGGCATCTCCAATCCGTACAGCTGTTCTGACTCGATC 660
consensus_6986#1 GCNTACATG---CTCTGTTTTTTTTTTTTTTTTTATGACTAGAA-TGT----ATGCGATT 115
* **** * * **** * * ** ** * *** * ****
consensus_6986#0 ACATCCATTTCGCCGAACAAAATTACCCGATTCTAGAGCGTTCTAGCAGAGCTCCGCTAC 720
consensus_6986#1 GCACCGAGTCTGTGAAGTGTAGCGGAGCTCTGCTAGAACGCTCTAGAA----TCGGGTAA 171
** * * * * * * * * ***** ** ***** * ** * **
consensus_6986#0 ACTTCACAGACTCGGTGCAATCGCATACATTCTAGTCATAAAGAGGAAGCAAAAAAAAGC 780
consensus_6986#1 TTTT-----GTTCGGCGAAATGG-ATGTGATCGAGTCAGAAAGAGGAAGCAANATAAAGC 225
** **** * *** * ** ** ***** ************* * *****
consensus_6986#0 CAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTGGTGTTTCTGCGTGGCGCGCG 840
consensus_6986#1 CAACCGATGTTTTTTTACACATCGTTGCACCGTTAAGTTGGTGTTTCTGCGTGGCGCGCG 285
************************************************************
consensus_6986#0 CGTGTGTGTGTTTTTTTTAACTTTCATCACCGTGAGAGACAATGTTTATTT-CCATGTAC 899
consensus_6986#1 CGTGTGTGTGTTTTTTTAAACTTTCATCACCGTGAGAGACAATGTTTATTTGCCATGTAC 345
***************** ********************************* ********
consensus_6986#0 TCAACATCGATATCTTTCGATGTTTTATTCCGTAAGCTTAATGTAAGAATTAATTTATTG 959
consensus_6986#1 TCAACATCGATATCTTTCGATGTTTTATTCCGTAAGCTTAATGTAAGAATTAATTTATTG 405
************************************************************
consensus_6986#0 TAATGCAAACGAAATAAAATGGACACAC-------------------------------- 987
consensus_6986#1 TAATGCATACGAAATAAAATGGACACACGAAACAAGAACAATGACAACCATAAAAAAGGA 465
******* ********************
consensus_6986#0 -------------------------------------------
consensus_6986#1 GGGNGAANGAAAAAACAGGCATGTTGAACCTCGGGGATTCTTG 508
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||