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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 870 fasta sequence
[TTGAATCGTCACTGTGGGATGACAACAAAAAAACTTGCTCCGGCTCAAATCAGAATTCACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGNAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCTCTTCAAGTTCCTGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA-TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGGCCGATCTGGACAAGGATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGGAAGGGTTTGACTATATCGAGGGGATCGATCTGTTCCGGAAGGTGTACGTGAACTTCGTTTCGGTTAAGGTCACCCCGTTCGTGCGCTTCGTGCTGC]
[+] EMBL BX620281 [TTGAATCGTCACTGTGGGATGACAACAAAAAAACTTGCTCCGGCTCAAATCAGAATTCACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGNAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCTCTTCAAGTTCCTGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACNANGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGGNCGATCTGGACAAGGATGACGTGCTGCTGCAGTCCAGCGTGCTGC ]
[+] EMBL BX604409 [ ACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCTCTTCAAGTTCCTGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCC ]
[+] EMBL BX616504 [ CTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACT GGCCGATCTGGACAAGGATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGGAAGGGTTTGACTATATCGAGGGGATCGATCTGTTCCGGAAGGTGTACGTGAACTTCGTTTCGGTTAAGGTCACCCCGTTCGTGCGCTTCGTGCTGC]
[+] EMBL AGA283400 [ CCATTCGGTCACCATCACACCGAACACGGTGGAGCTCATCACATCAACACTGTCACCCAAGGAAAGAGGTGTACGTGGACACGCTGCACACCGTGCTGGTAAAATGTTTGCCACCGATCTTCACGGAACCGACCGTGCATAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACAACGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGG CGATCTG ]
[+] EMBL AGA281639 [ ATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACT GGCCGATCTGGACAAGGATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGGAAGG ]
consensusID : consensus_6989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[GAGGCAAGAATCGGCACGTGGACGGAATTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCCTCTTCAAGTTCCCTGGCCGAGGCAGATGCTGACCAGACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAACACTGTCNNNNCGATAAAGAGGTGTACGTGGACACGCTGCTGAACGGTGCTGGTAAAATGCTTTGCCACCGATCTTCACGGAACCGACCGT]
[+] EMBL BX468851 [GAGGCAAGAATCGGCACGTGGACGGAATTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCCTCTTCAAGTTCCCTGGCCGAGGCAGATGCTGACCAGACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAACACTGTCNNNNCGATAAAGAGGTGTACGTGGACACGCTGCTGAACGGTGCTGGTAAAATGCTTTGCCACCGATCTTCACGGAACCGACCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6989#0 TTGAATCGTCACTGTGGGATGACAACAAAAAAACTTGCTCCGGCTCAAATCAGAATTC-- 58
consensus_6989#1 ---------------------------------------GAGGCAAGAATCGGCACGTGG 21
*** **** * *
consensus_6989#0 ACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTG 118
consensus_6989#1 ACGGAATT-GCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTG 80
******** ***************************************************
consensus_6989#0 GAACATTTGATGCGNAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTG 178
consensus_6989#1 GAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTG 140
************** *********************************************
consensus_6989#0 GAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGC 238
consensus_6989#1 GAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGC 200
************************************************************
consensus_6989#0 C-TCTTCAAGTTCC-TGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCA 296
consensus_6989#1 CCTCTTCAAGTTCCCTGGCCGAGGCAGATGCTGACCAG-ACACAACAGCATCCCGTATCA 259
* ************ *********************** *********************
consensus_6989#0 TCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTT 356
consensus_6989#1 TCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTT 319
************************************************************
consensus_6989#0 TTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGG 416
consensus_6989#1 TTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGG 379
************************************************************
consensus_6989#0 CCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAAC 476
consensus_6989#1 CCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAAC 439
************************************************************
consensus_6989#0 ACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACG-TGCTGGTAAAATGC 535
consensus_6989#1 ACTGTCNNNNCGATAAAGAGGTGTACGTGGACACGCTGCTGAACGGTGCTGGTAAAATGC 499
****** ******************************* **************
consensus_6989#0 TT-GCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTT 594
consensus_6989#1 TTTGCCACCGATCTTCACGGAACCGACCGT------------------------------ 529
** ***************************
consensus_6989#0 CGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCC 654
consensus_6989#1 ------------------------------------------------------------
consensus_6989#0 GGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGGCCGATCTGGACAAGG 714
consensus_6989#1 ------------------------------------------------------------
consensus_6989#0 ATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGG 774
consensus_6989#1 ------------------------------------------------------------
consensus_6989#0 AAGGGTTTGACTATATCGAGGGGATCGATCTGTTCCGGAAGGTGTACGTGAACTTCGTTT 834
consensus_6989#1 ------------------------------------------------------------
consensus_6989#0 CGGTTAAGGTCACCCCGTTCGTGCGCTTCGTGCTGC 870
consensus_6989#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||