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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1220 fasta sequence
[TCTCGCAGGTACGCCGCATGCATCTGAGCGCTTCGAACAGCGCCAAAAAGCGTAACCTTGGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCCGCTGGTGC-GCCGCATCTGCTCGGCATCCGGTACGACAAT-CGTGAAG-AT-CGGGAAGCGTTCGT-CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCATCAGCCGAGCGACAGATGCGCGAGCTGATGGGGCTGAAGCACAACCAGGAGCTGGTAGTGACGACGGTTGACGATGAAAGCGAGTGGGCTGCGTACAGGGGTGATACTAAGCTGAAGCTACTGCCCGCCCGGGATCAAACGAACGTTCGCGTGACGGCACAGATGCTCAACAGTTGCTACAGTATGCTTGGGCGGTTTGCCAACGAGACGGCGTTATCGTTCATCCTTTACCGAATTAAGCGCCTGCAGGGAAAGTGAGGTTGTGGCAGGGCAGCAGTAAGCATGACATGTAGGCCTTTAGTGTAGTGCAGCAGTACAAACAATACACACTTCAACGAACAGGATCATCGAAGAGCAATGA--GGGCGCTTGGGCTAGATTTTAACGACTAGTAGGTTTTACTTAGAAGATAGTGTATGGAGGTAGCGAAGATGGGATATATTTTGAATAAGGAATAAGGAACAAAGAAAACAGGGAACGAATTGTAACCCAAAGCAATAAAATTGATATATTTTGAGGCAC]
[+] EMBL BX607401 [TCTCGCAGGTACGCCGCATGCATCTGAGCGCTTCGAACAGCGCCAAAAAGCGTAACCTTGGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCCGCTGGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAAT CGTGAAG AT CGGGAAGCGTTCGT CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAG ]
[+] EMBL AL932926 [ CGACG TCGGTTTCATGGGTTTCCCGCTGGTGC GCCGCATCTGCTCGGCATCCGGTACGACAATCCGTGAAGAATCCGGGAAGCGTTCGTCCCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGT ]
[+] EMBL AGA281611 [ agctTGC GCCGCA CTGCTCGGCATCCGGTACGACAAT CGTGAAG AT CGGGAAGCGTTCGT CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGT GAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCATCAGCCGAGCGAC ]
[+] EMBL BM584200 [ ccgGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCCTCAGCCGAGCGACAGATGCGCGAGCTGATGGGGCTGAAGCACAACCAGGAGCTGGTAGTGACGACGGTTGACGATGAAAGCGAGTGGGCTGCGTACAGGGGTGATACTAAGCTGAAGCTACTGCCCGCCCGGGATCAAACGAACGTTCGCGTGACGGCACAGATGCTCAACAGTTGCTACAGTATGCTTGGGCGGTTTGCCAACGAGACGGCGTTATCGTTCATCCTTTACCGAATTAAGCGCCTGCAGGGAAAGTGAGGTTGTGGCAGGGCAGCAGTAAGCATGACATGTAGGCCTTTAGTGTAGTGCAGCAGTACAAACAATACACACTTCAACGAACAGGATCATCGAAGAGCAATGA GGGCGCTTGGGCTAGATTTTAACGACTAGTAGGTTTTACTTAGAAGATAGTGTATGGAGGTAGCGAAGATGGGATATATTTTGAATAAGGAATAAGGAACAAAGAAAACAGGGAACGAATTGTAACCCAAAGCAATAAAATTGATATATTTTGAGGCAC]
[-] EMBL AGA283202 [ AGTGCAGCAGTACAAACAATACACACTTCAACGAACAGGTTCATCGAAGAGCAATGAGGGGGCGCTTGTGCTAGATTTTAACGACTAGTAGGTTTTACTTAGAATATAGTGTTTGGAGGTAGCGAAGATGGGATATATTTTGATTAAGGAATAAGGAACAAAGAAAACAGGGAACGAATGGTAACCC ]
consensusID : consensus_6991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[CAAGAATCGGCACGNGGAAGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCGCTGGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGTCCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTAACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGTTTG]
[+] EMBL BX467910 [CAAGAATCGGCACGNGGAAGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCGCTGGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGTCCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTAACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6991#0 TCTCGCAGGTACGCCGCATGCATCTGAGCGCTTCGAACAGCGCCAAAAAGCGTAACCTTG 60
consensus_6991#1 -------------------------------------------CAAGAATCGGCACGNGG 17
*** ** ** ** *
consensus_6991#0 --GTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCCGCT 118
consensus_6991#1 AAGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCC-GCT 76
****************************************************** ***
consensus_6991#0 GGTGCG-CCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGT 177
consensus_6991#1 GGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGT 136
****** *****************************************************
consensus_6991#0 CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCT 237
consensus_6991#1 CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCT 196
************************************************************
consensus_6991#0 GTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCC 297
consensus_6991#1 GTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCC 256
************************************************************
consensus_6991#0 GTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTT 357
consensus_6991#1 GTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTT 316
************************************************************
consensus_6991#0 CGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGT 417
consensus_6991#1 CGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGT 376
************************************************************
consensus_6991#0 TGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTA-CATCTGCCGGGCGC 476
consensus_6991#1 TGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTAACATCTGCCGGGCGC 436
********************************************* **************
consensus_6991#0 TGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACC 536
consensus_6991#1 TGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACC 496
************************************************************
consensus_6991#0 GGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCA 596
consensus_6991#1 GGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCA 556
************************************************************
consensus_6991#0 AGGAGCTGACGGATGAGATCAATGAGAACTATATT-GAGACGGTCGGTTTGGATGGAACG 655
consensus_6991#1 AGGAGCTGACGGATGAGATCAATGAGAACTATATTTGAGACGGTCGGTTTGGATGGAACG 616
*********************************** ************************
consensus_6991#0 AATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCATCAGCCGAGCGACAG 715
consensus_6991#1 AATGGGACGTATACGCAGTTTG-------------------------------------- 638
****************** ***
consensus_6991#0 ATGCGCGAGCTGATGGGGCTGAAGCACAACCAGGAGCTGGTAGTGACGACGGTTGACGAT 775
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 GAAAGCGAGTGGGCTGCGTACAGGGGTGATACTAAGCTGAAGCTACTGCCCGCCCGGGAT 835
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 CAAACGAACGTTCGCGTGACGGCACAGATGCTCAACAGTTGCTACAGTATGCTTGGGCGG 895
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 TTTGCCAACGAGACGGCGTTATCGTTCATCCTTTACCGAATTAAGCGCCTGCAGGGAAAG 955
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 TGAGGTTGTGGCAGGGCAGCAGTAAGCATGACATGTAGGCCTTTAGTGTAGTGCAGCAGT 1015
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 ACAAACAATACACACTTCAACGAACAGGATCATCGAAGAGCAATGAGGGCGCTTGGGCTA 1075
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 GATTTTAACGACTAGTAGGTTTTACTTAGAAGATAGTGTATGGAGGTAGCGAAGATGGGA 1135
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 TATATTTTGAATAAGGAATAAGGAACAAAGAAAACAGGGAACGAATTGTAACCCAAAGCA 1195
consensus_6991#1 ------------------------------------------------------------
consensus_6991#0 ATAAAATTGATATATTTTGAGGCAC 1220
consensus_6991#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||