These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1220 fasta sequence [TCTCGCAGGTACGCCGCATGCATCTGAGCGCTTCGAACAGCGCCAAAAAGCGTAACCTTGGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCCGCTGGTGC-GCCGCATCTGCTCGGCATCCGGTACGACAAT-CGTGAAG-AT-CGGGAAGCGTTCGT-CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCATCAGCCGAGCGACAGATGCGCGAGCTGATGGGGCTGAAGCACAACCAGGAGCTGGTAGTGACGACGGTTGACGATGAAAGCGAGTGGGCTGCGTACAGGGGTGATACTAAGCTGAAGCTACTGCCCGCCCGGGATCAAACGAACGTTCGCGTGACGGCACAGATGCTCAACAGTTGCTACAGTATGCTTGGGCGGTTTGCCAACGAGACGGCGTTATCGTTCATCCTTTACCGAATTAAGCGCCTGCAGGGAAAGTGAGGTTGTGGCAGGGCAGCAGTAAGCATGACATGTAGGCCTTTAGTGTAGTGCAGCAGTACAAACAATACACACTTCAACGAACAGGATCATCGAAGAGCAATGA--GGGCGCTTGGGCTAGATTTTAACGACTAGTAGGTTTTACTTAGAAGATAGTGTATGGAGGTAGCGAAGATGGGATATATTTTGAATAAGGAATAAGGAACAAAGAAAACAGGGAACGAATTGTAACCCAAAGCAATAAAATTGATATATTTTGAGGCAC] [+] EMBL BX607401 [TCTCGCAGGTACGCCGCATGCATCTGAGCGCTTCGAACAGCGCCAAAAAGCGTAACCTTGGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCCGCTGGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAAT CGTGAAG AT CGGGAAGCGTTCGT CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAG ] [+] EMBL AL932926 [ CGACG TCGGTTTCATGGGTTTCCCGCTGGTGC GCCGCATCTGCTCGGCATCCGGTACGACAATCCGTGAAGAATCCGGGAAGCGTTCGTCCCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGT ] [+] EMBL AGA281611 [ agctTGC GCCGCA CTGCTCGGCATCCGGTACGACAAT CGTGAAG AT CGGGAAGCGTTCGT CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGT GAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCATCAGCCGAGCGAC ] [+] EMBL BM584200 [ ccgGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCCTCAGCCGAGCGACAGATGCGCGAGCTGATGGGGCTGAAGCACAACCAGGAGCTGGTAGTGACGACGGTTGACGATGAAAGCGAGTGGGCTGCGTACAGGGGTGATACTAAGCTGAAGCTACTGCCCGCCCGGGATCAAACGAACGTTCGCGTGACGGCACAGATGCTCAACAGTTGCTACAGTATGCTTGGGCGGTTTGCCAACGAGACGGCGTTATCGTTCATCCTTTACCGAATTAAGCGCCTGCAGGGAAAGTGAGGTTGTGGCAGGGCAGCAGTAAGCATGACATGTAGGCCTTTAGTGTAGTGCAGCAGTACAAACAATACACACTTCAACGAACAGGATCATCGAAGAGCAATGA GGGCGCTTGGGCTAGATTTTAACGACTAGTAGGTTTTACTTAGAAGATAGTGTATGGAGGTAGCGAAGATGGGATATATTTTGAATAAGGAATAAGGAACAAAGAAAACAGGGAACGAATTGTAACCCAAAGCAATAAAATTGATATATTTTGAGGCAC] [-] EMBL AGA283202 [ AGTGCAGCAGTACAAACAATACACACTTCAACGAACAGGTTCATCGAAGAGCAATGAGGGGGCGCTTGTGCTAGATTTTAACGACTAGTAGGTTTTACTTAGAATATAGTGTTTGGAGGTAGCGAAGATGGGATATATTTTGATTAAGGAATAAGGAACAAAGAAAACAGGGAACGAATGGTAACCC ] consensusID : consensus_6991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CAAGAATCGGCACGNGGAAGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCGCTGGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGTCCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTAACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGTTTG] [+] EMBL BX467910 [CAAGAATCGGCACGNGGAAGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCGCTGGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGTCCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCTGTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCCGTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTTCGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGTTGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTAACATCTGCCGGGCGCTGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACCGGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCAAGGAGCTGACGGATGAGATCAATGAGAACTATATTTGAGACGGTCGGTTTGGATGGAACGAATGGGACGTATACGCAGTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6991#0 TCTCGCAGGTACGCCGCATGCATCTGAGCGCTTCGAACAGCGCCAAAAAGCGTAACCTTG 60 consensus_6991#1 -------------------------------------------CAAGAATCGGCACGNGG 17 *** ** ** ** * consensus_6991#0 --GTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCCCGCT 118 consensus_6991#1 AAGTTTCATCAGCCAACCGGAAATGGCACTCACGACGTTCGGTTTCATGGGTTTCC-GCT 76 ****************************************************** *** consensus_6991#0 GGTGCG-CCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGT 177 consensus_6991#1 GGTGCGGCCGCATCTGCTCGGCATCCGGTACGACAATCGTGAAGATCGGGAAGCGTTCGT 136 ****** ***************************************************** consensus_6991#0 CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCT 237 consensus_6991#1 CCACTTCTGGGCGGTGATCGGTTTCATGCTGGGCGTGCGGGACGAGTACAACATGTGCCT 196 ************************************************************ consensus_6991#0 GTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCC 297 consensus_6991#1 GTTCCGGCTGGAGGTGGTCGAGATGATCTGCCACGTGGTGATACGGTACGTGTTTGTGCC 256 ************************************************************ consensus_6991#0 GTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTT 357 consensus_6991#1 GTCGCTGCAGCTCGAAACGCAGCTCCTGCGCCACATGATGGGTGCGATCGTGGACGCGTT 316 ************************************************************ consensus_6991#0 CGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGT 417 consensus_6991#1 CGCCCCGTACATGCCGTTCGTTTCGTACGAAAGCGTCATGTTTCTGACGCGCCGGCTCGT 376 ************************************************************ consensus_6991#0 TGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTA-CATCTGCCGGGCGC 476 consensus_6991#1 TGGCATTCCGGGCTACCAGTACGGTGCGGACATGGGCAAGGAGTAACATCTGCCGGGCGC 436 ********************************************* ************** consensus_6991#0 TGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACC 536 consensus_6991#1 TGCTGACGCAGGCAGAGCTAGACGCAGTGTTGGAGCAGATGACACCGAGGGATGGTTACC 496 ************************************************************ consensus_6991#0 GGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCA 596 consensus_6991#1 GGCAGGTGGAGGCAATGTACCGTGCCATATTTAGTGAAAAGCTGCGCATCTACACGATCA 556 ************************************************************ consensus_6991#0 AGGAGCTGACGGATGAGATCAATGAGAACTATATT-GAGACGGTCGGTTTGGATGGAACG 655 consensus_6991#1 AGGAGCTGACGGATGAGATCAATGAGAACTATATTTGAGACGGTCGGTTTGGATGGAACG 616 *********************************** ************************ consensus_6991#0 AATGGGACGTATACGCAGCTTGCGGGCGAGGAAGAACGGAAACCATCAGCCGAGCGACAG 715 consensus_6991#1 AATGGGACGTATACGCAGTTTG-------------------------------------- 638 ****************** *** consensus_6991#0 ATGCGCGAGCTGATGGGGCTGAAGCACAACCAGGAGCTGGTAGTGACGACGGTTGACGAT 775 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 GAAAGCGAGTGGGCTGCGTACAGGGGTGATACTAAGCTGAAGCTACTGCCCGCCCGGGAT 835 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 CAAACGAACGTTCGCGTGACGGCACAGATGCTCAACAGTTGCTACAGTATGCTTGGGCGG 895 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 TTTGCCAACGAGACGGCGTTATCGTTCATCCTTTACCGAATTAAGCGCCTGCAGGGAAAG 955 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 TGAGGTTGTGGCAGGGCAGCAGTAAGCATGACATGTAGGCCTTTAGTGTAGTGCAGCAGT 1015 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 ACAAACAATACACACTTCAACGAACAGGATCATCGAAGAGCAATGAGGGCGCTTGGGCTA 1075 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 GATTTTAACGACTAGTAGGTTTTACTTAGAAGATAGTGTATGGAGGTAGCGAAGATGGGA 1135 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 TATATTTTGAATAAGGAATAAGGAACAAAGAAAACAGGGAACGAATTGTAACCCAAAGCA 1195 consensus_6991#1 ------------------------------------------------------------ consensus_6991#0 ATAAAATTGATATATTTTGAGGCAC 1220 consensus_6991#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||