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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1260 fasta sequence
[TTTTTTTTTTTTTTTCACTGTTATAACATTGTATTTGACAACTTCTCTCAAACACTCCCATCAAGAGAAGACAATTCTGGTGTACCCTAAAATATGGCCGAAAACAACACGTACGCGACCGACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTTTGCTCTACGCTCTAAATTGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAAAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGGCCAGC-GGAAGCTAACGCTCGGCGCACCGATGCATCCAATCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGATGGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATATGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAACACTTACGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGGCTTGGCTCGGTCGTCCCTTCCACCAGCCGCATAAACTCGATGTGCGCCA-CAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCG-AGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCA-GCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCAGCTGCGTGATCCGGGGTACGGCCGGTAGGGAGGCACCGGTCGGTGGCCCGTCATCTCTGCGTACAAACCTCTCCCGCAAGGAAGCTGGAAGAAAATTGATAAAA]
[+] EMBL AGA281539 [TTTTTTTTTTTTTTTCACTGTTATAACATTGTATTTGACAACTTCTCTCAAACACTCCCATCAAGAGAAGACAATTCTGGTGTACCCTAAAATATGGCCGAAAACAACACGTACGCGACCGACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTTTGCTCTACGCTCTAAATTGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAAAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCGTGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGGCCAGC GGAAGCTAA ]
[+] EMBL CNS08YXA [ AACACGTACGCGACCGACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTGTTTGCTCTACGCTCTAAATTGCAGTCCGATACAAGATTCTATCCACGACGATCCTTCCGAACTTTAAACAAAAAGAGGGACTACACCATCGTCAGTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGG CAGC GGAAGCTAACGCTCGGCGCACCGATGCATCCAATCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGATGGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATATGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAACACTTACGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGGCTTGGCTCGGTCGTCCCTTCCACCAGCCGCATAAACTCGATGTGCGCCA CAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCG AGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCA GCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGC ]
[-] EMBL CNS08YXB [ CCACAGAAAAAACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGGCCAGCGGGAAG TAACGCTCGGCGCACCGATGCATCCAATCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGATGGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATATGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAAAACTTACGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGCGTCTGCTCGGTCGTCCCTTCCACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCG AGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCA GCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAG TGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCAGCTGCGTGATCCGGGGTACGGCCGGTAGGGAGGCACCGGTCGGTGGCCCGTCATCTCTGCGTACAAACCTCTCCCGCAAGGAAGCTGGAAGAAAATTGATAAAA]
[-] EMBL AGA283131 [ GTATCCGCTCGAAGCCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCAYGCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGYAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCAGCTGCGTGATCCGGGGTACGGCCGGTAGGGAGGCACCGGT ]
consensusID : consensus_6998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence
[AGATNGCCCCAGGCTTAAACACACGTACGCGACCGACCACACTGTAGCTAANTTAGTGGATAATTTAGTTTAGTAAAATTGTACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTATTGCTCTACGCTACTAAATTAGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAACAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTATCTCGGGAGGTTCCAGCCGGACAGAGGTGGATGAGGATGCCGCGCCGTGCTAGCGGCTAGGGCGTGACCAGCGGAGCAACAGNNNTAGTGCGGCAGGTCGGNCCATCGGCCAGCGGAAGCTAACGCTCGGCCGCACCGATNGCATCCAATCCAGTTGAAAGTTGCACCAGACAGACACAGTATTAGCTTACGATATAGACCAGACGTACCCCCGGTGCGATGGAAGCANTTCATTCAGAACAGAACACCGGGTCCATNNNNTGTCTGTGAAAAGAGCAAATGTAGAAAAACAATATGATCAATAGGGATNGGGCATNGNACACAAAAAGGCAAAAACAAAACAAACTTGAATGGCANACACTATACGCCATNCAGTAANATNGGAAGGAACCGCATCNGATATGTATGCAGCATGATCCGTCCAGAGANACAGGGTCAAAGANCTCGCAAGACANNGGACT]
[+] EMBL AL697615 [AGATNGCCCCAGGCTTAAACACACGTACGCGACCGACCACACTGTAGCTAANTTAGTGGATAATTTAGTTTAGTAAAATTGTACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTATTGCTCTACGCTACTAAATTAGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAACAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTATCTCGGGAGGTTCCAGCCGGACAGAGGTGGATGAGGATGCCGCGCCGTGCTAGCGGCTAGGGCGTGACCAGCGGAGCAACAGNNNTAGTGCGGCAGGTCGGNCCATCGGCCAGCGGAAGCTAACGCTCGGCCGCACCGATNGCATCCAATCCAGTTGAAAGTTGCACCAGACAGACACAGTATTAGCTTACGATATAGACCAGACGTACCCCCGGTGCGATGGAAGCANTTCATTCAGAACAGAACACCGGGTCCATNNNNTGTCTGTGAAAAGAGCAAATGTAGAAAAACAATATGATCAATAGGGATNGGGCATNGNACACAAAAAGGCAAAAACAAAACAAACTTGAATGGCANACACTATACGCCATNCAGTAANATNGGAAGGAACCGCATCNGATATGTATGCAGCATGATCCGTCCAGAGANACAGGGTCAAAGANCTCGCAAGACANNGGACT]
consensusID : consensus_6998#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[CCCCCGGTGCGATGGAAGCACTTCTTCAGACCAGAACCGCTTCCATTTTGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACCACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGCGTCTGCTCGGTCGTCTCTTCGACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCGAGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCAGCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM592092 [CCCCCGGTGCGATGGAAGCACTTCTTCAGACCAGAACCGCTTCCATTTTGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACCACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGCGTCTGCTCGGTCGTCTCTTCGACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCGAGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCAGCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6998#0 TTTTTTTTTTTTTTTCACTGTTATAACATTGTATTTGACAACTTCTCTCAAACACTCCCA 60
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 TCAAGAGAAGACAATTCTGGTGTACCCTAAAATATGGCCGAAAACAACACGTACGCGACC 120
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 GACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGC 180
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 TTTAAACCGAAACACTACACTATATCTCTTTGCTCTACGCTCTAAATTGCAGTCCGATAC 240
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 AAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAAAAAGAGGGACTACATCATCGT 300
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 CTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAA 360
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 ACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGG 420
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 ACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTT 480
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 ------------------------------------------------------------
consensus_6998#0 TGTGCGGCAGGTCGGCCATCGGCCAGCGGAAGCTAACGCTCGGCGCACCGATGCATCCAA 540
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 -----------------------------------------AGATNGCCCCAGGCTTAAA 19
consensus_6998#0 TCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGAT 600
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 CACACGTACGCGACCGACCACACTGTAGCTAANTTAGTGGATAATTTAGTTTAGTAAAAT 79
consensus_6998#0 GGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATA 660
consensus_6998#2 ------------------------------------------------------------
consensus_6998#1 TGTACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTATTGCTCTACGCTAC 139
consensus_6998#0 TGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAACACTTACGCATC 720
consensus_6998#2 ----CCCCCGGTGCGA--TGGAAGCACTTCTTCAGACCAGAACCGCTTCCATTTTGCATC 54
consensus_6998#1 TAAATTAGCAGTCCGA--TACAAGATTCTATCTACGAC-GATCCTTCCGAAGTTTAAAAA 196
* * ** * ** * ** * *
consensus_6998#0 GTAGTGCAGCACCGCATCGTTGT---TGCGC-ATGATCGTGAGCAG--CCGGTTAACGAC 774
consensus_6998#2 GTAGTGCAGCACCGCATCGTTGT---TGCGC-ATGATCGTGAGCAG--CCGGTTAACGAC 108
consensus_6998#1 ACAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTAC 256
* * * ** **** * ** ***** * *** * * * ** **
consensus_6998#0 CT--CGAAGAC-ACGCTCCAG-----------CTGCTCGTTAAACCGGTGCCACAGACCC 820
consensus_6998#2 CT--CGAAGACCACGCTCCAG-----------CTGCTCGTTAAACCGGTGCCACAGACCC 155
consensus_6998#1 GTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACAC 316
* * ** ** *** ** * ** * * *** * ** ** *
consensus_6998#0 ATC-AGATCGCCCACCGTCCGGTAGGTGGAGC--GAAGGCTTGGCTCGGTCGTCCCTTCC 877
consensus_6998#2 ATCCAGATCGCCCACCGTCCGGTAGGTGGAGC--GAAGCGTCTGCTCGGTCGTCTCTTCG 213
consensus_6998#1 ACCTATCTCGGGAGGTTCCAGCCGGACAGAGGTGGATGAGGATGCCGCGCCGTGCTAGCG 376
* * * *** * * * *** ** * ** * *** *
consensus_6998#0 ACCAGCCGCATAAACTCGATGTGCGCCA-CAGCAGCTTCGGCGAGTGGACGTACTCCT-- 934
consensus_6998#2 ACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCT-- 271
consensus_6998#1 GCTAGG-GCGTGA-CCAGCGGAGCAACAGNNNTAG-TGCGGCAGGTCGGNCCATCGGCCA 433
* ** ** * * * * * ** ** ** * **** ** * *
consensus_6998#0 ------GCTGACATTCG--CGCACC---TGTATCCGCTCGAGGCGCCAGTTCTCCTGAAT 983
consensus_6998#2 ------GCTGACATTCG--CGCACC---TGTATCCGCTCGAGGCGCCAGTTCTCCTGAAT 320
consensus_6998#1 GCGGAAGCTAACGCTCGGCCGCACCGATNGCATCCAATCCAGTTGAAAGTTGCACCAGAC 493
*** ** *** ****** * **** ** ** * **** * *
consensus_6998#0 GCCCGCAGT-TTGGAGGGTGGCA-GCAGCGGCTTTACC----GCGCGGTGGCTGCAGCTG 1037
consensus_6998#2 GCCCGCAGT-TTGGAGGGTGGCA-GCAGCGGCTTTACC----GCGCGGTGGCTGCAGCTG 374
consensus_6998#1 AGACACAGTATTAGCTTACGATATAGACCAGACGTACCCCCGGTGCGATGGAAGCANTTC 553
* **** ** * * * * * * **** * *** *** *** *
consensus_6998#0 AAC--GCACAGGAC---GAAGCTGCGCAGGGTCCGGTGCCGGAAC---TGCAGCACGCCG 1089
consensus_6998#2 AAC--GCACAGGAC---GAAGCTGCGCAGGGTCCGGTGCCGGAAC---TGCAGCACGCCG 426
consensus_6998#1 ATTCAGAACAGAACACCGGGTCCATNNNNTGTCTGTGAAAAGAGCAAATGTAGAAAAACA 613
* * **** ** * * *** * ** * ** ** * *
consensus_6998#0 GCATCCTCC-TCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTT 1148
consensus_6998#2 GCATCCTCC-TCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTT 485
consensus_6998#1 ATATGATCAATAGGGATNGGGCATNGNACACAAAAAGGCAAAAACAAAACAAACTTGAAT 673
** ** * * * * ** * ** * * * * * ** *
consensus_6998#0 CGCGATCAG-CTGCGTGA-TCCGGGGTACGGCCGGTAGGGAGGCACCGGTCGGTGGCCCG 1206
consensus_6998#2 CGCGATCGG-ACGCGTGG-GCGGACGCGTGGGCGGACGCGTGG-GCGGACGCGTGGGCGG 542
consensus_6998#1 GGCANACACTATACGCCATNCAGTAANATNGGAAGGAAC-CGCATCNGATATGTATGCAG 732
** * ** * * * * * * * ** * *
consensus_6998#0 TCATCTCTGCGTACAAACCTCTCCCGCAAGGAAGCTGGAAGAAAATTGATAAAA 1260
consensus_6998#2 ------------------------------------------------------
consensus_6998#1 CATGATCCGTCCAGAGANACAGGGTCAAAGANCTCGCAAGACANNGGACT---- 782
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||