cluster # 702

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Anopheles gambiae
cluster # 702 cluster # 702 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_702#0 length = 405 sequences # 1

consensus_702#1 length = 236 sequences # 1

consensusID : consensus_702#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGCCCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTCGCTCTGTTTGCGCTGCAAGCGTTCCTGGGCGTGCTGCCCATGCTGTTCTATCTGGCCGGGCTGGTCGAGCTGGCGGGTGAGCAGGTGCAGTCACCCGAACGGGTCGCCACACTGCTGGTGGCACTGTTTACCCTTGCCGTACCGGTCAGCCGCTATCTGCACGCGAGTCGGCTCCAGCAGCGGCCCGTCCTGGTGCTCAGCGCGATGCTCATCGCGCTGGCCACGCTTGCGCTCGGCTGGCACTGTCACGAGCGACGAAACCGCAGCCTGGACCTAGCGGAGCTC]

[+] EMBL AGA280751            [GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGCCCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTCGCTCTGTTTGCGCTGCAAGCGTTCCTGGGCGTGCTGCCCATGCTGTTCTATCTGGCCGGGCTGGTCGAGCTGGCGGGTGAGCAGGTGCAGTCACCCGAACGGGTCGCCACACTGCTGGTGGCACTGTTTACCCTTGCCGTACCGGTCAGCCGCTATCTGCACGCGAGTCGGCTCCAGCAGCGGCCCGTCCTGGTGCTCAGCGCGATGCTCATCGCGCTGGCCACGCTTGCGCTCGGCTGGCACTGTCACGAGCGACGAAACCGCAGCCTGGACCTAGCGGAGCTC]




>consensus_702#0
GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGC
CCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTC
GCTCTGTTTGCGCTGCAAGCGTTCCTGGGCGTGCTGCCCATGCTGTTCTATCTGGCCGGG
CTGGTCGAGCTGGCGGGTGAGCAGGTGCAGTCACCCGAACGGGTCGCCACACTGCTGGTG
GCACTGTTTACCCTTGCCGTACCGGTCAGCCGCTATCTGCACGCGAGTCGGCTCCAGCAG
CGGCCCGTCCTGGTGCTCAGCGCGATGCTCATCGCGCTGGCCACGCTTGCGCTCGGCTGG
CACTGTCACGAGCGACGAAACCGCAGCCTGGACCTAGCGGAGCTC

consensusID : consensus_702#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGCCCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTCGCTCTGCTGATAACGGTGTCCGGCCTGTCAGCAAACTCTAGAAGGAGGGCCGAAAAAGCGGCTTCTACTCTTACTCTTGCTGGGCAAGCCTTTTTTTTGTTGTTGGCTGGCGTGTG]

[+] EMBL AGA283391            [GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGCCCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTCGCTCTGCTGATAACGGTGTCCGGCCTGTCAGCAAACTCTAGAAGGAGGGCCGAAAAAGCGGCTTCTACTCTTACTCTTGCTGGGCAAGCCTTTTTTTTGTTGTTGGCTGGCGTGTG]




>consensus_702#1
GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGC
CCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTC
GCTCTGCTGATAACGGTGTCCGGCCTGTCAGCAAACTCTAGAAGGAGGGCCGAAAAAGCG
GCTTCTACTCTTACTCTTGCTGGGCAAGCCTTTTTTTTGTTGTTGGCTGGCGTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_702#0      GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGC 60
consensus_702#1      GCGCACGCACGAACCCAGCCCGCGCTGCAAGAGTGTCTCGCCCGCTGGCAGCAGCCCGGC 60
                     ************************************************************

consensus_702#0      CCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTC 120
consensus_702#1      CCGGGCCTGGTGGAAGCGCTGCGGCGCCAGGCGAACTTTACGCTGACCGTGCCCCTGCTC 120
                     ************************************************************

consensus_702#0      GCTCTGTTTGCGCTGCAAGCGTTCCTGGGCGTGCTGCCCATGCTGTTCTATCTGGCCGGG 180
consensus_702#1      GCTCTG------CTGATAACGGTGTCCGGCCTGTCAGCAA----ACTCTAGAAGGA-GGG 169
                     ******      ***  * ** *    *** **    * *      ****   **  ***

consensus_702#0      CTGGTCGAGCTGGCGGGTGAGCAGGTGCAGTCACCCGAACGGGTCGCCACACTGCTGGTG 240
consensus_702#1      CCGAAAAAGCGGCT---TCTACTCTTACTCTTGCT-GGGCAAGCCTTTTTTTTGTTGTTG 225
                     * *    *** *     *   *   * *  *  *  *  *  * *       ** ** **

consensus_702#0      GC-ACTGTTTACCCTTGCCGTACCGGTCAGCCGCTATCTGCACGCGAGTCGGCTCCAGCA 299
consensus_702#1      GCTGGCGTGTG------------------------------------------------- 236
                     **    ** *                                                  

consensus_702#0      GCGGCCCGTCCTGGTGCTCAGCGCGATGCTCATCGCGCTGGCCACGCTTGCGCTCGGCTG 359
consensus_702#1      ------------------------------------------------------------
                                                                                 

consensus_702#0      GCACTGTCACGAGCGACGAAACCGCAGCCTGGACCTAGCGGAGCTC 405
consensus_702#1      ----------------------------------------------