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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1080 fasta sequence
[CCGCGTTCTCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC---TGC-CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTCGTTACAGTGAACGTTCAACCCCTGCCCTGGTTGCTGGCCTGCGATCGCCCTCCAACGTACATGTGCCATTACACAACCCACCGCAGAAAACAGGCGCGGGGTGCGTAATAGCGCCAGTGCAGTCCCGGGTGAAATGTACCTTTCGGCTTAAGTTTGGTCAAAGGTGTGTGTGTGTGTGCGTGCTTGAAAATAAAAACGGAAACAAAACTAAAAGACTCGGTAAAAAGTACGGAAATTGGGGACAAGTAAAGTGACCTAAAACAAAAAACCATCAAAGCAAACATGAGCGCGAAGGATCAGCAGGATCGCGCGACGAAAACGATCCGCGTTGGATCGCGCAAAAGTGAGCTGGCAC]
[+] EMBL BM655729 [CCGCGTTCTCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCTTTTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC TGC CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTG ]
[+] EMBL BM646221 [ ccGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC TGC CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTCGTTACAGTGA ]
[+] EMBL BM619326 [ ccgGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC TGC CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTC ]
[+] EMBL BM596256 [ ccgcccaCGCGTCCGCCCACGCGTCCGCACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTCGTTACAGTGAACGTTCAACCCCTGCCCTGGTTGCTGGCCTGCGATCGCCCTCCAACGTACATGTGCCATTACACAACCCACCGCAGAAAACAGGCGCGGGGTGCGTAATAGCGCCAGTGCAGTCCCGGGTGAAATGTACCTTTCGGCTTAAGTTTGGTCAAAGGTGTGTGTGTGTGTGCGTGCTTGAAAATAAAAACGGAAACAAAACTAAAAGACTCGGTAAAAAGTACGGAAATTGGGGACAAGTAAAGTGACCTAAAACAAAAAACCATCAAAGCAAACATGAGCGCGAAGGATCAGCAGGATCGCGCGACGAAAACGATCCGCGTTGGATCGCGCAAAAGTGAGCTGGCAC]
consensusID : consensus_7026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[GTGGAATGTGCGTAAGAGGCTGGTCANNGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTGCCGTGCCGTGCCGTGCCGTGTTTCGTGCAGCACAAAAGTCGCGAATTTGTGACGGTGGGGAACTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTTGTAACCTCTACCATCCCCCTGTACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATTTTGCAAAAGTGCAAAAGTGCTCGTTCNTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCACGGCTCCCCACTGCCACCCAACNNGACTTTCATGTTAGTGAGCAGCAGCATCTCAANGCAGACGGAATTCCACTCCAGCACACAGCATCNNTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAAGGTGCTCCCAAACTCCCTCAANGACGACGANCCCCCACTNACACAANGNAGATTGACCACGGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCTGCACNTATGATC]
[+] EMBL BX619656 [GTGGAATGTGCGTAAGAGGCTGGTCANNGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTGCCGTGCCGTGCCGTGCCGTGTTTCGTGCAGCACAAAAGTCGCGAATTTGTGACGGTGGGGAACTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTTGTAACCTCTACCATCCCCCTGTACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATTTTGCAAAAGTGCAAAAGTGCTCGTTCNTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCACGGCTCCCCACTGCCACCCAACNNGACTTTCATGTTAGTGAGCAGCAGCATCTCAANGCAGACGGAATTCCACTCCAGCACACAGCATCNNTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAAGGTGCTCCCAAACTCCCTCAANGACGACGANCCCCCACTNACACAANGNAGATTGACCACGGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCTGCACNTATGATC]
consensusID : consensus_7026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence
[CCGCCCACGCGTCCGCGGACGCGTGGGCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTACGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTTCTTTCCGTTCGTGCCGTTCCGTGCCGTGCCGTGGTTCGTGCAGCACAAAAGTCGTGAATTTGTGACGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTAGTACTTCATTGCCGCGTAACCTCTACCATCCCC]
[+] EMBL BM632145 [CCGCCCACGCGTCCGCGGACGCGTGGGCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTACGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTTCTTTCCGTTCGTGCCGTTCCGTGCCGTGCCGTGGTTCGTGCAGCACAAAAGTCGTGAATTTGTGACGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTAGTACTTCATTGCCGCGTAACCTCTACCATCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7026#0 ------------------CCGCGTTCTCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGT 42
consensus_7026#1 ------------------------------------------------------------
consensus_7026#2 CCGCCCACGCGTCCGCGGACGCGTGGGCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGT 60
consensus_7026#0 TGTGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGG-TGACACACCAGAGTAGGCCA 101
consensus_7026#1 ----------GTGGAATGTGCGTAAGAGGCTGGTCANNGGTGACACACCAGAGTAGGCCA 50
consensus_7026#2 TGTGCTCCGCGTGGAATGTGCGTACGAGGCTGGTCACGG-TGACACACCAGAGTAGGCCA 119
************** *********** * ********************
consensus_7026#0 CGCAGCGAATCACAGTCTCCTTTCCGT----------TCGTGCCGTGCCGTGGTTCGTGC 151
consensus_7026#1 CGCAGCGAATCACAGTCTCCTTTCCGT----GCCGTGCCGTGCCGTGCCGTGTTTCGTGC 106
consensus_7026#2 CGCAGCGAATCACAGTCTTCTTTCCGTTCGTGCCGTTCCGTGCCGTGCCGTGGTTCGTGC 179
****************** ******** ************** *******
consensus_7026#0 AGCACAATAGTCGTGAATTTGTGATGGTGGGG---TGTGAACTGTTGCGAGTGAAAGACA 208
consensus_7026#1 AGCACAAAAGTCGCGAATTTGTGACGGTGGGGAACTGTGAACTGTTGCGAGTGAAAGACA 166
consensus_7026#2 AGCACAAAAGTCGTGAATTTGTGACGGTGGGG---TGTGAACTGTTGCGAGTGAAAGACA 236
******* ***** ********** ******* *************************
consensus_7026#0 CAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCG 268
consensus_7026#1 CACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTTGTA------------- 213
consensus_7026#2 CACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTAGTACTTCATTGCCGCG 296
** *************************************** ***
consensus_7026#0 TAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATT 328
consensus_7026#1 --ACCTCTACCATCCCCCTGTACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATT 271
consensus_7026#2 TAACCTCTACCATCCCC------------------------------------------- 313
***************
consensus_7026#0 TGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATC---------- 378
consensus_7026#1 TGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATTTTGCAAAAGT 331
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 -----GGTGCTCGTTCTT-GGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGA 432
consensus_7026#1 GCAAAAGTGCTCGTTCNTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGA 391
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 TAAGCGACAATCGCGGCTTCCCACTGCCACCCAACGGGACTTTCATGTTAGTGAGCAGCA 492
consensus_7026#1 TAAGCGACAATCACGGCTCCCCACTGCCACCCAACNNGACTTTCATGTTAGTGAGCAGCA 451
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 GCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCAT 552
consensus_7026#1 GCATCTCAANGCAGACGGAATTCCACTCCAGCACACAGCATCNNTGTGAGATTTCCCCAT 511
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 TCCCACAACCACCGTCCCA-GGTGCTCC-AAACTCCTC--AAGACGACGAACCCC-ACTT 607
consensus_7026#1 TCCCACAACCACCGTCCCAAGGTGCTCCCAAACTCCCTCAANGACGACGANCCCCCACTN 571
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 ACACA--GGAGATTGACCACG-TTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGC 664
consensus_7026#1 ACACAANGNAGATTGACCACGGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGC 631
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 GTGCTGCTGCTGC---GCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTG 721
consensus_7026#1 GTGCTGCTGCTGCTGCACNTATGATC---------------------------------- 657
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 CGTCGTTACAGTGAACGTTCAACCCCTGCCCTGGTTGCTGGCCTGCGATCGCCCTCCAAC 781
consensus_7026#1 ------------------------------------------------------------
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 GTACATGTGCCATTACACAACCCACCGCAGAAAACAGGCGCGGGGTGCGTAATAGCGCCA 841
consensus_7026#1 ------------------------------------------------------------
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 GTGCAGTCCCGGGTGAAATGTACCTTTCGGCTTAAGTTTGGTCAAAGGTGTGTGTGTGTG 901
consensus_7026#1 ------------------------------------------------------------
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 TGCGTGCTTGAAAATAAAAACGGAAACAAAACTAAAAGACTCGGTAAAAAGTACGGAAAT 961
consensus_7026#1 ------------------------------------------------------------
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 TGGGGACAAGTAAAGTGACCTAAAACAAAAAACCATCAAAGCAAACATGAGCGCGAAGGA 1021
consensus_7026#1 ------------------------------------------------------------
consensus_7026#2 ------------------------------------------------------------
consensus_7026#0 TCAGCAGGATCGCGCGACGAAAACGATCCGCGTTGGATCGCGCAAAAGTGAGCTGGCAC 1080
consensus_7026#1 -----------------------------------------------------------
consensus_7026#2 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||