cluster # 7027

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Anopheles gambiae
cluster # 7027 cluster # 7027 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7027#0 length = 949 sequences # 2

consensus_7027#1 length = 827 sequences # 3
consensus_7027#2 length = 119 sequences # 1

consensusID : consensus_7027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 949
fasta sequence

                              [GATCGCCCGAGGCAGGTGTATGGGTTGATCGCGGGTGTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAAAGTTCGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGCTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAAACACGCGTTTCGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATAGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAGAACGGTGGCAGATCTATTATGAATCATGCAGTTTTCTTGTGAAAGTGTGTGTCTGTGTGGGGAAGATGAAAAAAAGCAAATAAAGTGTATTTATCGACCAAATGTT]

[+] EMBL AL930196             [GATCGCCCGAGGCAGGTGTATGGGTTGATCGCGGGTGTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAAAGTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM657581             [                                                                                                                                                                                                                                                                                                                                                                                                         ccgGGGATGTAGAAAGGTAGCAAAAGTAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGCTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAAACACGCGTTTCGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATAGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAGAACGGTGGCAGATCTATTATGAATCATGCAGTTTTCTTGTGAAAGTGTGTGTCTGTGTGGGGAAGATGAAAAAAAGCAAATAAAGTGTATTTATCGACCAAATGTT]




>consensus_7027#0
GATCGCCCGAGGCAGGTGTATGGGTTGATCGCGGGTGTTGTTTCCGATCGAAGTCAGTCC
ATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGGGTTCTTTATACGGTA
CAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTT
TGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGTGGGTTGTAGTGAGAT
CTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGC
TACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTAT
CTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGA
AGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAAAGTTCGAGTTCT
CTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGT
AACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGG
GCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGCTAGCGTAAGCGGC
AGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAA
CATCTAGCGCGAAACACGCGTTTCGTATAATGTGACAGAATAATCCCCCAACCTCCAGGT
GGGTGGAGGATGCAACTCATAGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCT
AAGAACGGTGGCAGATCTATTATGAATCATGCAGTTTTCTTGTGAAAGTGTGTGTCTGTG
TGGGGAAGATGAAAAAAAGCAAATAAAGTGTATTTATCGACCAAATGTT

consensusID : consensus_7027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 827
fasta sequence

                              [CCGGTACTTTCTCAGCGGGCAGCTGTACGAGACGGATCGTGTGTTGATGTTCTGGGGCATCTGCGCGTTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGNTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAATGTGACAGTGTATATGNG]

[+] EMBL BM649745             [CCGGTACTTTCTCAGCGGGCAGCTGTACGAGACGGATCGTGTGTTGATGTTCTGGGGCATCTGCGCGTTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGGAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATT                                                                                                                                                                                                                                                                        ]
[+] EMBL BX629008             [                             AGACGGATCGCGTGCTGATGTTCTGGGGCATCTGCGCGCTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAAAGTTCGAGTTTTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGAT                                                                                                                     ]
[+] EMBL BX620393             [                                                                                   CGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGNTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATGGATAATCCAGCTCTACCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGNTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAATGTGACAGTGTATATGNG]




>consensus_7027#1
CCGGTACTTTCTCAGCGGGCAGCTGTACGAGACGGATCGTGTGTTGATGTTCTGGGGCAT
CTGCGCGTTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCC
GATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGTTTAGTGG
GTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTA
CTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGT
GGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCA
CATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCT
GCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTA
GAAAGGTAGCAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAA
GTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATC
CAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCA
ACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCT
GGNTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGC
GGGCGCAAGTCAACAACATCTAGCGCGAATGTGACAGTGTATATGNG

consensusID : consensus_7027#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [CCGAGCGCGAATGTGACAGTGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATGGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAG]

[+] EMBL BM586966             [CCGAGCGCGAATGTGACAGTGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATGGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAG]




>consensus_7027#2
CCGAGCGCGAATGTGACAGTGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGT
GGAGGATGCAACTCATGGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7027#0      ------------------------------------------------------------
consensus_7027#1      CCGGTACTTTCTCAGCGGGCAGCTGTACGAGACGGATCGTGTGTTGATGTTCTGGGGCAT 60
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      -------------GATCGCCCGAGGCAGGTGTATGGGTTGATCGCGGG-TGTT-GTTTCC 45
consensus_7027#1      CTGCGCGTTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCC 120
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      GATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGG 105
consensus_7027#1      GATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGTTTAGTGG 180
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      GTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTA 165
consensus_7027#1      GTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTA 240
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      CTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGT 225
consensus_7027#1      CTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGT 300
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      GGGTTGTAGTGAGATCTTT-GCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCA 284
consensus_7027#1      GGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCA 360
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      CATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCT 344
consensus_7027#1      CATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCT 420
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      GCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTA 404
consensus_7027#1      GCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTA 480
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      GAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAA 464
consensus_7027#1      GAAAGGTAGCAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAA 540
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      GTAAAGTTCGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATC 524
consensus_7027#1      GTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATC 600
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      CAGCTCTCCCAAGGGTAACGCGCACACATGG-AATGTGTGTTCCGTCGTAGTTGCGCTGC 583
consensus_7027#1      CAGCTCTCCCAAGGGTAACGCGCACACATGG-AATGTGTGTTCCGTCGTAGTTGCGCTGC 659
consensus_7027#2      ---------------CCGAGCGCGAATGTGACAGTGTATAATGTGACAGAATAATCCCCC 45
                                         ****  *  **  * *** *  *  * *  * *    *  *

consensus_7027#0      AACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGC-GATAT-TTCAT 641
consensus_7027#1      AACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGC-GATAT-TTCAT 717
consensus_7027#2      AACCTCCAGGTGGGTGGAGGATGCAACTCATG-GCTAGTTGTTTAACTTGATAAGCTAAC 104
                      ***  *   *     **  * ** *     ** ** ** **    *   ****   * * 

consensus_7027#0      TCTGGCTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAA 701
consensus_7027#1      TCTGGNTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAA 777
consensus_7027#2      GTTAAGCAGTCTAAG--------------------------------------------- 119
                        *    **  ****                                             

consensus_7027#0      CGCGGGCGCAAGTCAACAACATCTAGCGCGAAACACGCGTTTCGTATAATGTGACAGAAT 761
consensus_7027#1      CGCGGGCGCAAGTCAACAACATCTAGCGCGAATGTGACAGTGTATATGNG---------- 827
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      AATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATAGCTAGTTGTTTAACTTGATA 821
consensus_7027#1      ------------------------------------------------------------
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      AGCTAACGTTAAGCAGTCTAAGAACGGTGGCAGATCTATTATGAATCATGCAGTTTTCTT 881
consensus_7027#1      ------------------------------------------------------------
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      GTGAAAGTGTGTGTCTGTGTGGGGAAGATGAAAAAAAGCAAATAAAGTGTATTTATCGAC 941
consensus_7027#1      ------------------------------------------------------------
consensus_7027#2      ------------------------------------------------------------
                                                                                  

consensus_7027#0      CAAATGTT 949
consensus_7027#1      --------
consensus_7027#2      --------