These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 928 fasta sequence [TTCATTTTTGCCGTACTCGTATGTTTCCATTTTCCCATGATTTACACTCCACTGTTTTCCCGCACCCAGTCACGAACGCTGGCTACGCGTCCATATACACCTGGATATCCTGGCTGAGCGCATCCATAGCCCCACGAGACCACACCGACCAGCTTGCCATCAGCAACCAGCGGACCGCCGGAATCTCCCTGGCAGGCGTCCTTTCCACCCTGCTGGTATCCGGCACACAGCATACGATCGGTGATTTCTCCGAACCACATGTAGGCATCGCTACAATCTTCATGGCTCACGGTCGGTACGTTGGCAGCCCGCAGGAAATCGCTAGACTCGACGGCACTTTGGGTGTTGCCCCAGCCAGAAACGGTGGCCATGGTTCCTGGCTCGACAGGTTCCTCATGCTCTGGAAGTTCGACCGGTTGCACCATATCGCTGAAGGTAAGCTCAGTCTCCAGCTCCATCAGCGAGAAGTCGTAGTCGATTGTGTTACCATCGTACTGCGGGTGCTCGACAGTTCGCAGTACTCCGACAAGAGTACCTCCAGTAGCGTGTTCCGATGAGCCCAGGCGCACGGCGAGGCTGCTGGGATCCAAACCCTGGGTGCAGTGGGCAGCAGTAAGGACCCACTTGTTGTCCAGCACGGAGCCGCCGCAACGGTGGCTGTTGAAGTATTGCAGGGACACCTGAAACGGAGCATCCGACACGTCGATCTGGAATCCACCGACGACGCGATGACCGTTGCTGCCGCGATGAAGCCGAGGCAGGAATCTGGGCAGCAGCGGATGGACCAAGTTATGCCGCCCGGATGGTTGTTCTTGCGCACAAGCGACCACCGCAACCAGAACAGCCAGCAGGAGGATTGCAATCTTGTTCGACATCTTGTCAGGCACTCGTATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCCGC] [+] EMBL CNS09BW8 [TTCATTTTTGCCGTACTCGTATGTTTCCATTTTCCCATGATTTACACTCCACTGTTTTCCCGCACCCAGTCACGAACGCTGGCTACGCGTCCATATACACCTGGATATCCTGGCTGAGCGCATCCATAGCCCCACGAGACCACACCGACCAGCTTGCCATCAGCAACCAGCGGACCGCCGGAATCTCCCTGGCAGGCGTCCTTTCCACCCTGCTGGTATCCGGCACACAGCATACGATCGGTGATTTCTCCGAACCACATGTAGGCATCGCTACAATCTTCATGGCTCACGGTCGGTACGTTGGCAGCCCGCAGGAAATCGCTAGACTCGACGGCACTTTGGGTGTTGCCCCAGCCAGAAACGGTGGCCATGGTTCCTGGCTCGACAGGTTCCTCATGCTCTGGAAGTTCGACCGGTTGCACCATATCGCTGAAGGTAAGCTCAGTCTCCAGCTCCATCAGCGAGAAGTCGTAGTCGATTGTGTTACCATCGTACTGCGGGTGCTCGACAGTTCGCAGTACTCCGACAAGAGTACCTCCAGTAGCGTGTTCCGATGAGCCCAGGCGCACGGCGAGGCTGCTGGGATCCAAACCCTGGGTGCAGTGGGCAGCAGTAAGGACCCACTTGTTGTCCAGCACGGAGCCGCCGCAACGGTGGCTGTTGAAGTATTGCAGGGACACCTGAAACGGAGCATCCGACACGTCGATCTGGAATCCACCGACGACGCGATGACCGTTGCTGCCGCGATGAAGCCGAGGCAGGAATCTGGGCAGCAGCGGATGGACCAAGTTATGCCGCCCGGATGGTTGTTCTTGCGCACAAGCGACCACCGCAACCAGAACAGCCAGCAGGAGGATTGCAATCTTGTTCGACATCTTGTCAGGCACTCGTATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCCGC] consensusID : consensus_7030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [CATCCAATCGAACGCCAAGGTGCTGTCGAACATGATCAAGCAGAAGCGCAAGGAGAAGGTGTTTAAGGTGATCCGGAGCGGCAAGACGAAGCGCAAGGCCTGGAAGCGTATGGTCACGAAGGTGACGTACGTCGGCGAGAACTTTACCCGCAAACCGCCCAAGTACGAACGCTTCATCCGACCGATGGCGCTGCGTATGAACAAGGCGCACGTGACGCACCCGGAGCTGAAGGCCACCTTCCATTTGCCGATCATTGGCGTGAAGAAGAATCCCTCCTCGCCGATGTACACGAGCTTGGGCGTCATCACCAAGGGTACGGTGATTGAGGTGAACATTTCCGAGCTCGGTCTCGTCACACAGTCCGGCAAGGTGGTGTGGGGAAAGTACGCCCAGGTGACGAACAATCCGGAGAACGACGGTTGCATCAACGCGGTACTGCTGGTGTAAAGCAGCGGCGGAGGAAGCGGGAGGGGAAAGGGATGATATATTAAGGGGGGGAGANGGAATTGGTCTGAATTGGGTTGTCGCATCCGGTTAAAGACGGACTGCGTAATTCTTCAGCAGTGATAGTGCGCTAGGTATTAAGCTTTTCTTATCTAAGAGCAGGGGATAAGTTCGAATCAAACAAATCTCTGGCGTAAAGGAGAAGGCACAGGATCAGGATTTTTGTACNAACGAAACAACAAGCCCTTGAATAANAAAGGACCCGGTTGAAATATGGCGCGCTACATTGTTTAGCGA] [+] EMBL BX627684 [CATCCAATCGAACGCCAAGGTGCTGTCGAACATGATCAAGCAGAAGCGCAAGGAGAAGGTGTTTAAGGTGATCCGGAGCGGCAAGACGAAGCGCAAGGCCTGGAAGCGTATGGTCACGAAGGTGACGTACGTCGGCGAGAACTTTACCCGCAAACCGCCCAAGTACGAACGCTTCATCCGACCGATGGCGCTGCGTATGAACAAGGCGCACGTGACGCACCCGGAGCTGAAGGCCACCTTCCATTTGCCGATCATTGGCGTGAAGAAGAATCCCTCCTCGCCGATGTACACGAGCTTGGGCGTCATCACCAAGGGTACGGTGATTGAGGTGAACATTTCCGAGCTCGGTCTCGTCACACAGTCCGGCAAGGTGGTGTGGGGAAAGTACGCCCAGGTGACGAACAATCCGGAGAACGACGGTTGCATCAACGCGGTACTGCTGGTGTAAAGCAGCGGCGGAGGAAGCGGGAGGGGAAAGGGATGATATATTAAGGGGGGGAGANGGAATTGGTCTGAATTGGGTTGTCGCATCCGGTTAAAGACGGACTGCGTAATTCTTCAGCAGTGATAGTGCGCTAGGTATTAAGCTTTTCTTATCTAAGAGCAGGGGATAAGTTCGAATCAAACAAATCTCTGGCGTAAAGGAGAAGGCACAGGATCAGGATTTTTGTACNAACGAAACAACAAGCCCTTGAATAANAAAGGACCCGGTTGAAATATGGCGCGCTACATTGTTTAGCGA] consensusID : consensus_7030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence [CCGATTTTTGTCAGCGTAAATCGTAACATCCCCACAGATAACCGAAAATGTGTGACGACGATGTTGCCGCGCTGGTCGTAGACAATGGATCCGGTATGTGCAAGGCCGGGTTCGCCGGGGACGATGCGCCACGTGCCGTGTTCCCATCAGGGCGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTCGGCGATGAGGCCCAGAGCAAGCGAGGTATCCTGACGCTGAAGTACCCGATCGAGCACGGTATCATCACGAACTGGGACGATATGGAGAAGATCTGGCACCACACGTTCTACAATGAGCTGCGCGTGGCTCCGGAGGAGCACCCGGTCCTACTGACGGAGGCCCCGCTCAACCCGAAGGCGAACCGTGAGAAGATGACGCAGATCATGTTCGAAACCTTCAACTCGCCGGCTATGTATGTGGCCATCCAGGCTGTGCTGTCGTTGTACGCTTCTGGCCGTACCACCGGTATTGTGCTGGACTCTGGTGATGGTGTGTCGCACACGGTGCCCATCTACGAAGGTTACGCTCTTCCTCACGCCATCCTGCGTCTGGATCTGGCCGGTCGCGATCTGACCGACTACCTGATGAAGATCCTGACCGAGCGAGGCTACTCGTTCACTACCACCGCTGAGCGGGAAATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTTGCGCTGGACTTTGAGCAGGAGATGGCAACT] [+] EMBL BM618932 [CCGATTTTTGTCAGCGTAAATCGTAACATCCCCACAGATAACCGAAAATGTGTGACGACGATGTTGCCGCGCTGGTCGTAGACAATGGATCCGGTATGTGCAAGGCCGGGTTCGCCGGGGACGATGCGCCACGTGCCGTGTTCCCATCAGGGCGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTCGGCGATGAGGCCCAGAGCAAGCGAGGTATCCTGACGCTGAAGTACCCGATCGAGCACGGTATCATCACGAACTGGGACGATATGGAGAAGATCTGGCACCACACGTTCTACAATGAGCTGCGCGTGGCTCCGGAGGAGCACCCGGTCCTACTGACGGAGGCCCCGCTCAACCCGAAGGCGAACCGTGAGAAGATGACGCAGATCATGTTCGAAACCTTCAACTCGCCGGCTATGTATGTGGCCATCCAGGCTGTGCTGTCGTTGTACGCTTCTGGCCGTACCACCGGTATTGTGCTGGACTCTGGTGATGGTGTGTCGCACACGGTGCCCATCTACGAAGGTTACGCTCTTCCTCACGCCATCCTGCGTCTGGATCTGGCCGGTCGCGATCTGACCGACTACCTGATGAAGATCCTGACCGAGCGAGGCTACTCGTTCACTACCACCGCTGAGCGGGAAATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTTGCGCTGGACTTTGAGCAGGAGATGGCAACT] consensusID : consensus_7030#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [TCATTGCCTTGCTTGCTTTGCTTCTTTATTGCATATAATTACAAACCCGTCAGGATCCAAGCTTTCTCGGCCGAGGCCTGGGGGGCACCCGACGCAACCGACTGGCCATCGTCGACTGGGGCATCCTGGCACGAAAGCGACGGGAACTTCTGGTACAGGGCAGCGCGATACTTCGGATGGCTGAGGCCGTACACGATCGGGTTGTAGACGGCGTTGGCCTTGGCGAACAGCGAGCCCCAAATGGTAAAAAAAAAACTGATCGGGGCCGCCTTGA] [+] EMBL CNS08VIH [TCATTGCCTTGCTTGCTTTGCTTCTTTATTGCATATAATTACAAACCCGTCAGGATCCAAGCTTTCTCGGCCGAGGCCTGGGGGGCACCCGACGCAACCGACTGGCCATCGTCGACTGGGGCATCCTGGCACGAAAGCGACGGGAACTTCTGGTACAGGGCAGCGCGATACTTCGGATGGCTGAGGCCGTACACGATCGGGTTGTAGACGGCGTTGGCCTTGGCGAACAGCGAGCCCCAAATGGTAAAAAAAAAACTGATCGGGGCCGCCTTGA] consensusID : consensus_7030#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 167 fasta sequence [GGCCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTAATTATTTTAATAATTTTC-TTTAAATAAAATTATATTTTTTATATTAGGTCCTTTCGTACTACAATATAATAATTTATTAAAGATAGAAACCAACCTGGCTTACGCCGGTTTGCGGACGCGTGGGCGG] [+] EMBL BM629615 [GGCCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTAATTATTTTAATAATTTTC TTTAAATAAAATTATATTTTTTATATTAGGTCCTTTCGTACTACAAT ] [-] EMBL BM636553 [ aAATTATTTTAATAATTTTCATTTAAATAAAATTATATTTTTTATATTAGGTCCTTTCGTACTACAATATAATAATTTATTAAAGATAGAAACCAACCTGGCTTACGCCGGTTTGCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 ------------------------------------------------------------ consensus_7030#2 ------------------------------------------------------------ consensus_7030#0 TTCATTTTTGCCGTACTCGTATGTTTCCATTTTCCCATGATTTACACTCCACTGTTTTCC 60 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 ------------------------------------------------------------ consensus_7030#2 ------------------------------------------------------------ consensus_7030#0 CGCACCCAGTCACGAACGCTGGCTACGCGTCCATATACACCTGGATATCCTGGCTGAGCG 120 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 ----------CATCCAATCGAACGCCAAGGTGCTGTCGAACATGATCAAGCAGAAGCGCA 50 consensus_7030#2 ------------------------------------------------------------ consensus_7030#0 CATCCATAGCCCCACGAGACCACACCGACCAGCTTGCCATCAGCAACCAGCGGACCGCCG 180 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 AGGAGAAGGTGTTTAAGGTGATCCGGAGCGGCAAGACGAAGCGCAAGGCCTGGAAGCGTA 110 consensus_7030#2 -----------------------------------------------CCGATTTTTGTCA 13 consensus_7030#0 GAATCTCCCTGGCAGGCGTCCTTTCCACCCTGCTGGTATCCGGCACACAGCATACGATCG 240 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 TGGTCACGAAGGTGACGTACGTCGGCGAGAACTTTACCCGCAAACCGCCCAAGTACGAA- 169 consensus_7030#2 GCGTAAATCGTAACATCCCCACAGATAACCGAAAATGTGTGACGACGATGTTGCCGCGC- 72 consensus_7030#0 GTGATTTCTCCGAACCACATGTAGGCATCGCTACAATCTTCATGGCTCACGGTCGGTACG 300 consensus_7030#3 ------------------------------------------------TCATTGCCTTGC 12 consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 CGCTTCATCCGACCGATGGCGCTGCGTATGAACAAGGCGCACGTGACGCACCCGGAGCTG 229 consensus_7030#2 TGGTCGTAGACAATGGATCCGGTATGTGCAAGGCCGGGTTCGCCGGGGACGATGCGCCAC 132 consensus_7030#0 TTGGCAGCCCGCAGGAAATCGCTAGACTCGACGGCACTTTGGGTGTTGCCCCAGCCAGAA 360 consensus_7030#3 TTGCTTTGCTT--CT-TTATTGCATATAATTACAAACCCGTCAGGATCCAAGCTTTCTCG 69 consensus_7030#4 -----------------------GGCCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTT 37 consensus_7030#1 AAGGCCACCTT--CC-ATTTGCCGATCATTGGCGTGAAGAAGAATCCCTCCTCGCCGATG 286 consensus_7030#2 GTGCCGTGTTC--CCATCAGGGCGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTCG 190 consensus_7030#0 ACGGTGGCCATGGTTCCTGGCTCGACAGGTTCCTCATGCTCTGGAAGTTCGACCGGTTGC 420 consensus_7030#3 GCCGAGGCCTGGGGGGCACCCGACGC----------AACCG--ACTGGCCATCGTCGACT 117 consensus_7030#4 TTAATTATTTTAATAATTTTCTTTA-----------AATAA--AATTATATTTTTTATAT 84 consensus_7030#1 TACACGAGCTTGGGCGTCATCACCAAGGGTACGGTGATTGA--GGTGAACATTTCCGAGC 344 consensus_7030#2 GCGATGAGGCCCAGAGCAAGCGAGGTA--TCCTGACGCTGA--AGTACCCGATCGAGCAC 246 consensus_7030#0 ACCATATCGCTGAAGGTAAGCTCAGTCTCCAGCTCCATCAGCGAGAAGTCGTAGTCGATT 480 * consensus_7030#3 GGGGCATCCTGGCACGA---AAGCGACGGGAACTTCTGGTACAGGGCAGCG--CGATA-- 170 consensus_7030#4 TAGGTCCTTTCGTACTA---CAAT-ATAATAATTTATTAAAGATAGAAAC---CAACC-- 135 consensus_7030#1 TCGGTCTCGTCACACAGT--CCGGCAAGGTGGTGTGGGGAAAGTACGCCCAGGTGACG-- 400 consensus_7030#2 GGTATCATCACGAACTGGGACGATATGGAGAAGATCTGGCACCACACGTTCTACAATGAG 306 consensus_7030#0 GTGTTACCATCGTACTGCGGGTGC-TCGACAGTTCGCAGTACTCCGACAAGAGTACCTCC 539 ** * consensus_7030#3 CTTCGGATG----GCTGAGGCCG-TA-CACGATCGGGTTGTAGACGGCGTTG-GCCTTGG 223 consensus_7030#4 -------TG----GCTTACGCCGGTT-TGCGGACG---CGTGGGCGG------------- 167 consensus_7030#1 AACAATCCG----GAGAACGACGGTTGCATCAACGCGGTACTGCTGGTGTAAAGCAGCGG 456 consensus_7030#2 CTGCGCGTG----GCTCCGGAGGAGCACCCGGTCCTACTGACGGAGGCCCCG--CTCAAC 360 consensus_7030#0 AGTAGCGTGTTCCGATGAGCCCAGGCGCACGGCGAGGCTGCTGGGATCCAAACCCTGGGT 599 * * * consensus_7030#3 CGAACAGCGAGCCCCAAATGGTAAAAAAAAAACTGAT-CGGGGCCGCCTTGA-------- 274 consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 CGGAGGAAGCGGGAGGGGAAAGGGATGATATATTAAG-GGGGGGAGANGGAATTGGTCTG 515 consensus_7030#2 CCGAAGGCGAACCGTGAGAAGATGACGCAGATCATGT-TCGAAAC-CTTCAACTCGCCGG 418 consensus_7030#0 GCAGTGGGCAGCAGTAAGGACCCACTTGTTGTCCAGCACGGAGCCGCCGCAACGGTGGCT 659 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 AATTGGGTTGTCGCATCCGGTTAAAGACGGACTGCGTAATTCTTCAGCAGTGATAGTGCG 575 consensus_7030#2 CTATGTATGTGGCCATCCAGGCTGTGCTGTCGTTGTACGCTTCTGGCCGTACCACCGGTA 478 consensus_7030#0 GTTGAAGTATTGCAGGGACACCTGAAACGGAGCATCCGACACGTCGATCTGGAATCCACC 719 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 CTAGGTATTAAG-CTTTTCTTATCTAAGAGCAGGGGATAAGTTCGAATCAAACAAATCTC 634 consensus_7030#2 TTGTGCTGGACT-CTGGTGATGGTGTGTCGCACACGGTGCCCATCTACGAAGGTTACGCT 537 consensus_7030#0 GACGACGCGATGACCGTTGCTGCCGCGATGAAGCCGAGGCAGGAATCTGGGCAGCAGCGG 779 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 TGGCGTAAAGGAGAAGGCACAGGATCAGGATTTTTGTACNAACGAAACAACAAGCCCTTG 694 consensus_7030#2 CTTCCTCACGCCATCCTGCGTCTGGATCTGGCCGGTCGCGATCTGACCGACTACCTGATG 597 consensus_7030#0 ATGGACCAAGTTATGCCGCCCGGATGGTTGTTCTTGCGCACAAGCGACCACCGCAACCAG 839 consensus_7030#3 ------------------------------------------------------------ consensus_7030#4 ------------------------------------------------------------ consensus_7030#1 AATAANAAAGGACCCGGTTGAAATATGGCGCGCTACATTGTTTAGCGA------------ 742 consensus_7030#2 AAGATCCTGACCGAGCGAGGCTACTCGTTCACTACCACCGCTGAGCGGGAAATCGTGCGT 657 consensus_7030#0 AACAGCCAGCAGGAGGATTGCAATCTTGTTCGACATCTTGTCAGGCACTCGTATCCAGTA 899 consensus_7030#3 --------------------------------------------------------- consensus_7030#4 --------------------------------------------------------- consensus_7030#1 --------------------------------------------------------- consensus_7030#2 GACATCAAGGAGAAGCTGTGCTACGTTGCGCTGGACTTTGAGCAGGAGATGGCAACT 714 consensus_7030#0 GGCCAACAGTTCTCGAGGAATTCCGCCGC---------------------------- 928 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||