cluster # 704

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Anopheles gambiae
cluster # 704 cluster # 704 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_704#0 length = 690 sequences # 1

consensus_704#1 length = 681 sequences # 1

consensusID : consensus_704#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [CCGCCCACGCGTCCGGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGAGTTGATAAGAACATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTCGCACGTAAACAAACGGCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACAATTGCACGTCCTTCGGCGCACGGACAACTGTTGGACAATAAAACCCTGTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAAGCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCGCATCCGACCGGCACGCTAACGATGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACGTGGTACAGAA]

[+] EMBL BM619395             [CCGCCCACGCGTCCGGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGAGTTGATAAGAACATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTCGCACGTAAACAAACGGCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACAATTGCACGTCCTTCGGCGCACGGACAACTGTTGGACAATAAAACCCTGTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAAGCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCGCATCCGACCGGCACGCTAACGATGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACGTGGTACAGAA]




>consensus_704#0
CCGCCCACGCGTCCGGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAG
GGTTTACACTGTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGG
TTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTA
TCGGGCCGTATTTTTGGATGGTGGAGTTGATAAGAACATCGCACGCAACCACTGCATCAA
CAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGT
GTGTGTTTCACCAGCTGTCAAAGTCGCACGTAAACAAACGGCACAGCGAGACTACTGCCA
ACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACAAT
TGCACGTCCTTCGGCGCACGGACAACTGTTGGACAATAAAACCCTGTTTCCCGATCCACC
TGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAA
GCTTTCCTTTCACGATGAACCGTCCCTCAAGCTGCAGCACCGGGTGTGGGAGTTTGCCAG
CAAGCACCCACTGTTCGCGCATCCGACCGGCACGCTAACGATGGACGAGGAACGCCACCT
AGCCACCAAGCGCATGTACGTGGTACAGAA

consensusID : consensus_704#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCGTGCGTAGCGAGGTTGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGGGTTGATAAGAGCATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTTGCACGTAAACAAACGCCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACGATTGCACGTCCTTCGGCGCAGGGACAACTGTTGGACAATAAAACCCTCTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAACCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCCCATCCGACCGGCACGCTAACGATGGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACG]

[+] EMBL BM652168             [CCGTGCGTAGCGAGGTTGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGGGTTGATAAGAGCATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTTGCACGTAAACAAACGCCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACGATTGCACGTCCTTCGGCGCAGGGACAACTGTTGGACAATAAAACCCTCTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAACCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCCCATCCGACCGGCACGCTAACGATGGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACG]




>consensus_704#1
CCGTGCGTAGCGAGGTTGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCC
AGGGTTTACACTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGG
TTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTA
TCGGGCCGTATTTTTGGATGGTGGGGTTGATAAGAGCATCGCACGCAACCACTGCATCAA
CAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGT
GTGTGTTTCACCAGCTGTCAAAGTTGCACGTAAACAAACGCCACAGCGAGACTACTGCCA
ACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACGAT
TGCACGTCCTTCGGCGCAGGGACAACTGTTGGACAATAAAACCCTCTTTCCCGATCCACC
TGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAA
GCTTTCCTTTCACGATGAACCGTCCCTCAACCTGCAGCACCGGGTGTGGGAGTTTGCCAG
CAAGCACCCACTGTTCGCCCATCCGACCGGCACGCTAACGATGGGACGAGGAACGCCACC
TAGCCACCAAGCGCATGTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_704#0      CCGCCCAC-GCGTC-CGGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCC 58
consensus_704#1      CCGTGCGTAGCGAGGTTGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCC 60
                     ***  *   ***     *******************************************

consensus_704#0      AGGGTTTACACTGTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTAT 118
consensus_704#1      AGGGTTTACACTGTGTGTGT--TTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTAT 118
                     ********************  **************************************

consensus_704#0      GGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGC 178
consensus_704#1      GGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGC 178
                     ************************************************************

consensus_704#0      TATCGGGCCGTATTTTTGGATGGTGGAGTTGATAAGAACATCGCACGCAACCACTGCATC 238
consensus_704#1      TATCGGGCCGTATTTTTGGATGGTGGGGTTGATAAGAGCATCGCACGCAACCACTGCATC 238
                     ************************** ********** **********************

consensus_704#0      AACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCT 298
consensus_704#1      AACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCT 298
                     ************************************************************

consensus_704#0      GTGTGTGTTTCACCAGCTGTCAAAGTCGCACGTAAACAAACGGCACAGCGAGACTACTGC 358
consensus_704#1      GTGTGTGTTTCACCAGCTGTCAAAGTTGCACGTAAACAAACGCCACAGCGAGACTACTGC 358
                     ************************** *************** *****************

consensus_704#0      CAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACA 418
consensus_704#1      CAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACG 418
                     *********************************************************** 

consensus_704#0      ATTGCACGTCCTTCGGCGCACGGACAACTGTTGGACAATAAAACCCTGTTTCCCGATCCA 478
consensus_704#1      ATTGCACGTCCTTCGGCGCAGGGACAACTGTTGGACAATAAAACCCTCTTTCCCGATCCA 478
                     ******************** ************************** ************

consensus_704#0      CCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTC 538
consensus_704#1      CCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTC 538
                     ************************************************************

consensus_704#0      AAGCTTTCCTTTCACGATGAACCGTCCCTCAAGCTGCAGCACCGGGTGTGGGAGTTTGCC 598
consensus_704#1      AAGCTTTCCTTTCACGATGAACCGTCCCTCAACCTGCAGCACCGGGTGTGGGAGTTTGCC 598
                     ******************************** ***************************

consensus_704#0      AGCAAGCACCCACTGTTCGCGCATCCGACCGGCACGCTAACGATGG-ACGAGGAACGCCA 657
consensus_704#1      AGCAAGCACCCACTGTTCGCCCATCCGACCGGCACGCTAACGATGGGACGAGGAACGCCA 658
                     ******************** ************************* *************

consensus_704#0      CCTAGCCACCAAGCGCATGTACGTGGTACAGAA 690
consensus_704#1      CCTAGCCACCAAGCGCATGTACG---------- 681
                     ***********************