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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7059#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence
[CCCCGCAGGTTTACACGTCATTTCACCGGGATGTAAAAATATCAAACATAAATAACTGGCGACAAATTTTCCTCGCCTTTNTCCGTACGTGTATTTTCTGATGCAAANCAGTGCGTGAGAAAGAAGTNTGACGTGTATGAATCATTCGTCATTGCCCACGGTCCGGTCTGTATCCATTTGTACCTGTCTGCAAATTCTAACCAGTCAGATGCCATCCCGATACTAAACATCATGAGCGATAATCCAAAACCTGGTNACAAACCAGGTTGGCAGCGNTTTATGCGGNTCTGGCTGCACCGGNAACGTNCCGGAGNGACATTCATTACCGCTTGGGAATTTGGGGACCCAAAAACAANTTTTGGGTCTTACACTAAAACGCGGCATTCCCAGCCTTACANTACGTTACCNATTCACCCTTGGCCAAGTANCTTTGGAAACGCCCAATATAACATATACGTATCACAAAAGANACTGTCAAACAAAGNTCATAAGGGGNAGGTGGCACCTTGAATTGACAAAGGAGGANGCGGGTACCCCCCATNNGNGTAATTCACGTTTAAAACNCCNCCNGCNNTATNTGAAAAAATCCCCACTNGTNAGTAANTGGCATACACAGAANGGGAGGGAGACTTCCACGCAACAAATAGAGNAAAANATTGATGAANAAGATGGCGAAACAGCCCTTGGGGGATAANAAGAGTATNCCCACCCTTGTGTNAAANTGCCCCAAACCGCATNAAATCATAGCCCCGNTTTTGNGGGTGANAAATANAACCAANAAGACTCTCNAGAGAGCGTAAGCANCTCAAAAGCTATACAAGNCAAACCNAACNCACAGACACAACAN]
[+] EMBL AL695235 [CCCCGCAGGTTTACACGTCATTTCACCGGGATGTAAAAATATCAAACATAAATAACTGGCGACAAATTTTCCTCGCCTTTNTCCGTACGTGTATTTTCTGATGCAAANCAGTGCGTGAGAAAGAAGTNTGACGTGTATGAATCATTCGTCATTGCCCACGGTCCGGTCTGTATCCATTTGTACCTGTCTGCAAATTCTAACCAGTCAGATGCCATCCCGATACTAAACATCATGAGCGATAATCCAAAACCTGGTNACAAACCAGGTTGGCAGCGNTTTATGCGGNTCTGGCTGCACCGGNAACGTNCCGGAGNGACATTCATTACCGCTTGGGAATTTGGGGACCCAAAAACAANTTTTGGGTCTTACACTAAAACGCGGCATTCCCAGCCTTACANTACGTTACCNATTCACCCTTGGCCAAGTANCTTTGGAAACGCCCAATATAACATATACGTATCACAAAAGANACTGTCAAACAAAGNTCATAAGGGGNAGGTGGCACCTTGAATTGACAAAGGAGGANGCGGGTACCCCCCATNNGNGTAATTCACGTTTAAAACNCCNCCNGCNNTATNTGAAAAAATCCCCACTNGTNAGTAANTGGCATACACAGAANGGGAGGGAGACTTCCACGCAACAAATAGAGNAAAANATTGATGAANAAGATGGCGAAACAGCCCTTGGGGGATAANAAGAGTATNCCCACCCTTGTGTNAAANTGCCCCAAACCGCATNAAATCATAGCCCCGNTTTTGNGGGTGANAAATANAACCAANAAGACTCTCNAGAGAGCGTAAGCANCTCAAAAGCTATACAAGNCAAACCNAACNCACAGACACAACAN]
consensusID : consensus_7059#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CAGAATCGCCCGACGGTTATTATACTTTATGGAATGCNTGGAGAGTAACAATGAGATATACGAAGAAAATGATAAATGAGCAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCACCATCGTTTGCTTTCCAACTTCCTCTAACGAAAAGGATCAACCGTGTTTTAACGACAGCGGATACAGCTTTAGGCCTTAGGCAAAAGTTCACCACTAATGGTTGACGACGTTAGTGTTGCGCTATTGCGCTACAGATCCCTCTCCAGCAAAACACGACAAGCTTTGTTTTCCTGCAGCCGGAAGCAATATCCTTGTGATTGCGACAAGCAGTGGACTATTGACCGTACACCTCTTGAACCCAACGAGGACAAAAGGATTCGGNATTAGTCAGATCTCACTTTGACTTTGCTCGGGTAAACGCAAAACAAGGGTAACAGCTGTTCTGCTGTAACGCGCATCATACCCCCCTTAGTTGNGAATAGGTTCTCTTAGGTAGTCNGTTATCGGCATCGGGAAGCCATAACACCTTACTTTCCGAACTAAGCTCAAACAGGCCAACAACACGAAACTTCAACCTTACACACCCCAGTATTCTATTCAGACTGTCCAAATCCGATACGNAAT]
[+] EMBL AL697050 [CAGAATCGCCCGACGGTTATTATACTTTATGGAATGCNTGGAGAGTAACAATGAGATATACGAAGAAAATGATAAATGAGCAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCACCATCGTTTGCTTTCCAACTTCCTCTAACGAAAAGGATCAACCGTGTTTTAACGACAGCGGATACAGCTTTAGGCCTTAGGCAAAAGTTCACCACTAATGGTTGACGACGTTAGTGTTGCGCTATTGCGCTACAGATCCCTCTCCAGCAAAACACGACAAGCTTTGTTTTCCTGCAGCCGGAAGCAATATCCTTGTGATTGCGACAAGCAGTGGACTATTGACCGTACACCTCTTGAACCCAACGAGGACAAAAGGATTCGGNATTAGTCAGATCTCACTTTGACTTTGCTCGGGTAAACGCAAAACAAGGGTAACAGCTGTTCTGCTGTAACGCGCATCATACCCCCCTTAGTTGNGAATAGGTTCTCTTAGGTAGTCNGTTATCGGCATCGGGAAGCCATAACACCTTACTTTCCGAACTAAGCTCAAACAGGCCAACAACACGAAACTTCAACCTTACACACCCCAGTATTCTATTCAGACTGTCCAAATCCGATACGNAAT]
consensusID : consensus_7059#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 644 fasta sequence
[CCGGTTTTATTTTTGTTACAACGTTTACAACCAGCCACGTCGTTCGTAACGGATTGTTTCAACGT-GCGCCCAAACCTA-CCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAACTCAGCTTATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGTACGTGTGCTCTAGTTTGTTTGTTTTGTTTATTTTGTTACTGCACAAGAGCTCAATTTTGATCGTAACCAGATCAGTAGGAAAAGGAAGGAAAACAAAAGAATGGTCCATGAAGGTCCAGGCAATATATAGAGCCTAGCAGGGTGGATTGCGTGTTGTTTAGTAGAATTAAAGTCGTCTTTTTTC]
[+] EMBL BM575510 [CCGGTTTTATTTTTGTTACAACGTTTACAACCAGCCACGTCGTTCGTAACGGATTGTTTCAACGTGGCGCCCAAACCTA CCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAACTCAGCTTATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGTACGTGTGCTCTAGTTTGTTTGTTTTGTTTATTTTGTTACTGCACAAGAGCTCAATTTTGATCGTAACCAGATCAGTAGGAAAAGGAAGGAAAACAAAAGAATGGTCCATGAAGGTCCAGGCAATATATAGAGCCTAGCAGGGTGGATTGCGTGTTGTTTAGTAGAATTAAAGTCGTCTTTTTTC]
[+] EMBL BM590417 [ ccgCAACCAGCCACGTCGTTCGTAACGGATTGTTTCAACGT GCGCCCAAACCTA CCCCCCCCCCCCCCCTGGGCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTT ]
[+] EMBL BM634224 [ ccgcccac GCGTCC GACCTACCCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCACAAGGAAGAAGACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAACTCAGCTTATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGAACGTGTGCTCTAGGTTGATTGTTTTGCTGATTTTGATACT ]
consensusID : consensus_7059#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCGATCGACTGCATCGAGTTAGAACGCGTGGATTGCGCTGAGAGAGAGGAGGAACAATAAAAAGAGTAGCATTGAAAGAAAAAACGAGAAAACACTCGCAAAGTACTGACGGAAAGTGGAGCTAACGCTACACCGACCAAAACGCCCGTCCCGATGGAGGAGGAGGACAAGAAAGTGGCTGCAGGCGACGCTGATGCCTCGGCCGATCCGAAGGAGCTGGCCAAGAATGAACTGTCCGAGGTGCACAAGCATGAATCGGCACCGTTCGATCCGTCGATCGAACCGCTGCTGAGAGACAACCCCCGGCGGTTCGTGATCTTCCCCATCCAGTATCCGGACATTTGGCAAATGTACAAGAAGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAAGACTGGGAGACGCTGAAACCAAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCTGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCGATGGAAAATGTGCACAGCGAGATGTAC]
[+] EMBL BM632356 [CCGATCGACTGCATCGAGTTAGAACGCGTGGATTGCGCTGAGAGAGAGGAGGAACAATAAAAAGAGTAGCATTGAAAGAAAAAACGAGAAAACACTCGCAAAGTACTGACGGAAAGTGGAGCTAACGCTACACCGACCAAAACGCCCGTCCCGATGGAGGAGGAGGACAAGAAAGTGGCTGCAGGCGACGCTGATGCCTCGGCCGATCCGAAGGAGCTGGCCAAGAATGAACTGTCCGAGGTGCACAAGCATGAATCGGCACCGTTCGATCCGTCGATCGAACCGCTGCTGAGAGACAACCCCCGGCGGTTCGTGATCTTCCCCATCCAGTATCCGGACATTTGGCAAATGTACAAGAAGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAAGACTGGGAGACGCTGAAACCAAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCTGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCGATGGAAAATGTGCACAGCGAGATGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7059#0 CCCCGCAGGTTTACACGTCATTTCACCGGGATGTAAAAATATCAAACATAAATAACTGGC 60
consensus_7059#3 ------------------------------------------------------------
consensus_7059#1 ------------------------------------------------------------
consensus_7059#2 ------------------------------------------------------------
consensus_7059#0 GACAAATTTTCCTCGCCTTTNTCCGTACGTGTATTTTCTGATGCAAANCAGTGCGTGAGA 120
consensus_7059#3 ------------------------------------------------------------
consensus_7059#1 ------------------------------------------------------------
consensus_7059#2 ------------------------------------------------------------
consensus_7059#0 AAGAAGTNTGACGTGTATGAATCATTCGTCATTGCCCACGGTCCGGTCTGTATCCATTTG 180
consensus_7059#3 ------------------------------------------------------------
consensus_7059#1 ------------------------------------------------------------
consensus_7059#2 ------------------------------------------------------------
consensus_7059#0 TACCTGTCTGCAAATTCTAACCAGTCAGATGCCATCCCGATACTAAACATCATGAGCGAT 240
consensus_7059#3 ------------------------------------------------------------
consensus_7059#1 ------------------------------------------CAGAATCGCCCGACGGTT 18
consensus_7059#2 ------------------------------------------------------------
consensus_7059#0 AATCCAAAACCTGGTNACAAACCAGGTTGGCAGCGNTTTATGCGGNTCTGGCTGCAC--C 298
consensus_7059#3 -----------------CCGATCGACT--GCATCGAGTTAGAACGCGTGGATTGCGC--T 39
consensus_7059#1 ATTATACTTTATGGAATGCNTGGAGAGTAACAATGAGATATACGAAGAAAATGATAAA-T 77
consensus_7059#2 ---CCGGTTTTATTTTTGTTACAACGTTTACAACCAGCCACGTCGTTCGTAACGGATTGT 57
** *
consensus_7059#0 GGNAACGTNCCGGAGNGACATTCATTACCGCTTGGGAATTTGGGGACCCAAAAACAANTT 358
consensus_7059#3 GAGAGAGAGGAGGAACAATAAAAAGAGTAGCATTGAAAGA-AAAAACGAGAAAACACTCG 98
consensus_7059#1 GAGCAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTC 137
consensus_7059#2 TTCAACGTGCGCCCAAACCTACCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAAC 117
** * *
consensus_7059#0 TTGGGTCTTACACTAAAACGCGGCATTCCCAGCCTTACANTACGTTACCNATTCACCCTT 418
consensus_7059#3 CAAAGTACTGACGGAAAGTGGAGC-----TAACGCTACACCG----ACCAAAACGCCC-- 147
consensus_7059#1 CCATGTTTAAGAAAGAAAGGCTTT--TGTTTGCACCATCGTTTGCTTTCCAACTTCCTCT 195
consensus_7059#2 ACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCT 177
* * * *
consensus_7059#0 GGCCAAGTANCT----------TTGGAAACGCCCAATATAACATATACGTATCACAAAAG 468
consensus_7059#3 GTCCCGATGGAG----------GAGGAGGACAAGAAAGTGGC-TGCAGGCGACGCTGATG 196
consensus_7059#1 AACGAAAAGGATCAACCGTGTTTTAACGACAGCGGATACAGC-TTTAGGCCTTAGGCAAA 254
consensus_7059#2 TACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAA 237
* *
consensus_7059#0 ANACTGTCAAACAAAGNTCATAAGGGGNAGGTGG-CACCTTGAATTGACAAAGGAGGANG 527
consensus_7059#3 CCTCGGCCGATCCGAAGGAGCTGGCCAAGAATGAACTGTCCGAGGTGCACAAGCATGAAT 256
consensus_7059#1 AGTTCACCACTAATGGTTGACGACGTTAGTGTTG-CGCTATTGCGCTACAGATCCCTCTC 313
consensus_7059#2 AATTTATC--TTTTAAGTAGTAGTGTATAGACA--CATCAAACAACGCCCCTTTAAGAGG 293
* *
consensus_7059#0 CGG----GTACCCCCCA-TNNGNGTAATTCACGTTTAAAACN--CCNCCNGCNNTATNTG 580
consensus_7059#3 CGGCACCGTTCGATCCG-TCGATCGAACCGCTGCTGAGAGACAACCCCCGGCGGTTCGTG 315
consensus_7059#1 CAGCAAAACACGACAAGCTTTGTTTTCCTGCAGCCGGAAGCAATATCCTTGTGATTGCGA 373
consensus_7059#2 AGGGACGAGAGAGCGCA---AGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCG 350
* *
consensus_7059#0 AAAAAATCC--CCACTNGTNAG-TAANTGGCATACACAGAANGGGAGGGAGACTTCCACG 637
consensus_7059#3 ATCTTCCCCATCCAGTATCCGGACATTTGGCAAATGTACAAGAAGGCGGAAGCTTCCTTC 375
consensus_7059#1 CAAGCAGTGGACTATTGACCGTACACCTCTTGAACCCAACGAGGACAAAAGGATTCGGNA 433
consensus_7059#2 ATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAAC 410
* * * **
consensus_7059#0 CAACAAATAGAGNAAAANA---TTGATGAANAAGATGGCGA-AACAG---------CCCT 684
consensus_7059#3 TGGACGGTGGAAGAGGTTGA-TCTGTCCAAGGACATGAAAG-ACTGGG-----AGACGCT 428
consensus_7059#1 TTAGTCAGATCTCACTTTGACTTTGCTCGGGTAAACGCAAA-ACAAGGGTAACAGCTGTT 492
consensus_7059#2 TCAGCT-TATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGTACGTGTGCT 469
** * *
consensus_7059#0 TGGGGGATAANAAGAGTATNCCCACCCT---TGTGTNAAANTGCCCCAAACCG--CATNA 739
consensus_7059#3 GAAACCAAGCGAACGCCACTTCATCTCC---CACGTGCTGGCCTTCTTTGCTG--CGTCC 483
consensus_7059#1 CTGCTGTAACGCGCATCATACCCCCCTTAGTTGNGAATAGGTTCTCTTAGGTAGTCNGTT 552
consensus_7059#2 CTAGTTT---GTTTGTTTTGTTTATTTTGTTACTGCACAAGAGCTCAATTTTGATCGT-- 524
* * *
consensus_7059#0 AATCATAGCCC-------CGNTTTTGNGGGTGANAAATANAACCAANAAG-ACTCTCNAG 791
consensus_7059#3 GACGGTATCGTGAA----CGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTAC 539
consensus_7059#1 ATCGGCATCGGGAAGCCATAACACCTTACTTTCCGAACTAAGCTCAAACAGGCCAACAAC 612
consensus_7059#2 AACCAGATCAGTAGGAAAAGGAAGGAAAACAAAAGAATGGTCCATGAAGGTCCAGGCAAT 584
* * * * * *
consensus_7059#0 AGAGCGTAAGCANCTCAAAAGCTATACAAGNCAAACCNAACNCACAGACA-CAACAN--- 847
consensus_7059#3 GGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCGATGGAAAATGTGCACAGCGAGATGTA 599
consensus_7059#1 ACGAAACTTCAACCTTACACACCCCAGTATTCTATTCAGACTGTCCAAATCCGATACGNA 672
consensus_7059#2 ATATAGAGCCTAGCAGGGTGGATT--GCGTGTTGTTTAGTAGAATTAAAGTCGTCTTTTT 642
* *
consensus_7059#0 --
consensus_7059#3 C- 600
consensus_7059#1 AT 674
consensus_7059#2 TC 644
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||