These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1806 fasta sequence [GACCCACGCGTCCGGTGCAAGCACGATTTGTTACATTGTGTAACTGTGATTTTCACAAATTATATTAATTTTGATTTCATAAAACAGTCAATGTGAAAAATACGGCTTATTTCCGCGCTCAAAATGATAAGGCACTGTTCTTTTTCTTTTTCAAAATATTATATTTTAGGCATTCGTGCTAGACGAAACCATAAGGGTTAAATTCGAATGTTATCAACAAACACAAAACAAAAAAAGAAAACAACCCGCAACCCCAATCAGCGTAAAAAAGTG--TCCCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTTGCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAA-GGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTG-AATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGACGAGCCGCTAATGCGCGAACTGGGCAAGCTGGCCAAGCAGTACAGCCTGAACGTGCAAACGCATGTGTCGGAAAATTTGGGCGAAATTGAAACGGTGAAGCAGCAGTACCCGAGCGCCCCTCACTACTCGGGCGTGTACGATGAGGTTGGACTGCTGACGGACCGGACCGTGCTCGCTCACGGTGTCCATCTGGAGGACGCCGAGCTGAAGGTGCTGGCCGCCCGTGGCACCTCCGTAGCGCACTGTCCCAGCTCCAACACAAACCTTGGGTCGGGTTTTTGTGACGTTCGGCGCCTGCTGGATGCCCGCG-TCAAGGTC-GGCCTGGGAACG-GACGTGTCCGGTGGAAGCGACATGAGCATACTGGCAGCAATGCG-TGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAAGACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATTCCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCACTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGATACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACCAAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGAACATTGTGAAGGTGTACGTTGCGGGCAAACAAATTAAAACATAGGAAAGGTGCCTTTATTAATTGCCTCGGAAGATATTTTATACCTATAAACCACTCAACAACGAACAAATAAAACAAATAAATTTTT] [+] EMBL BM650156 [GACCCACGCGTCCGGTGCAAGCACGATTTGTTACATTGTGTAACTGTGATTTTCACAAATTATATTAATTTTGATTTCATAAAACAGTCAATGTGAAAAATACGGCTTATTTCCGCGCTCAAAATGATAAGGCACTGTTCTTTTTCTTTTTCAAAATATTATATTTTAGGCATTCGTGCTAGACGAAACCATAAGGGTTAAATTCGAATGTTATCAACAAACACAAAACAAAAAAAGAAAACAACCCGCAACCCCAATCAGCGTAAAAAAGTG TCCCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTTGCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAA ] [+] EMBL BM582996 [ ccgAAAAAAGAAAACAACCCGCAACCCCAATCAGCGTAAAAAAGTGTTTCCCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTTGCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAA GGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTGAAATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCT ] [+] EMBL BM637911 [ ccgGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTTGCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAAGGGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTG AATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGACGAGCCGCTAATGCGC ] [+] EMBL CNS09D2Q [ AACCGAACAAGATTCTGGTTGACGAGATGGTGCGTCAA GGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTG AATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGACGAGCCGCTAATGCGCGAACTGGGCAAGCTGGCCAAGCAGTACAGCCTGAACGTGCAAACGCATGTGTCGGAAAATTTGGGCGAAATTGAAACGGTGAAGCAGCAGTACCCGAGCGCCCCTCACTACTCGGGCGTGTACGATGAGGTTGGACTGCTGACGGACCGGACCGTGCTCGCTCACGGTGTCCATCTGGAGGACGCCGAGCTGAAGGTGCTGGCCGCCCGTGGCACCTCCGTAGCGCACTGTCCCAGCTCCAACACAAACCTTGGGTCGGGTTTTTGTGACGTTCGGCGCCTGCTGGATGCCCGCG TCAAGGTC GGCCTGGGAACG GACGTGTCCGGTGGAAGCGACATGAGCATACTGGCAGCAATGCG TGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAAGACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATTCCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCACTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGATACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACCAAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGA ] [-] EMBL CNS09D2R [ TGCCCGCGTTCAAGGTCGGGCCTGGGAACGCGACGTGTCCGGTGGAAGCGACATGAGCATACTGGCAGCAATGCGCTGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAAGACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATTCCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCACTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGATACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACCAAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGAACATTGTGAAGGTGTACGTTGCGGGCAAACAAATTAAAACATAGGAAAGGTGCCTTTATTAATTGCCTCGGAAGATATTTTATACCTATAAACCACTCAACAACGAACAAATAAAACAAATAAATTTTT] consensusID : consensus_7061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [CGACCCACGCGTCCGCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTTGCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGGCGTATCTGAATACAAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGATTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGCACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAAGGGCAGCGCGGTTTCGTT] [+] EMBL BM605226 [CGACCCACGCGTCCGCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTTGCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGGCGTATCTGAATACAAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGATTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGCACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAAGGGCAGCGCGGTTTCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7061#0 GACCCACGCGTCCGGTGCAAGCACGATTTGTTACATTGTGTAACTGTGATTTTCACAAAT 60 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 TATATTAATTTTGATTTCATAAAACAGTCAATGTGAAAAATACGGCTTATTTCCGCGCTC 120 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 AAAATGATAAGGCACTGTTCTTTTTCTTTTTCAAAATATTATATTTTAGGCATTCGTGCT 180 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 AGACGAAACCATAAGGGTTAAATTCGAATGTTATCAACAAACACAAAACAAAAAAAGAAA 240 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 ACAACCCGCAACCCCAATCAGCGTAAAAAAGTGTCC-CTTCCGGCAATTTGGTATGAAAC 299 consensus_7061#1 ---------------------CG-ACCCACGCGTCCGCTTCCGGCAATTTGGTATGAAAC 38 ** * * * **** *********************** consensus_7061#0 GTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATT 359 consensus_7061#1 GTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATT 98 ************************************************************ consensus_7061#0 GGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTT 419 consensus_7061#1 GGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTT 158 ***************************************** ***** ************ consensus_7061#0 GCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTC 479 consensus_7061#1 GCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGGC 218 ***** **************************************************** * consensus_7061#0 GTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATC 539 consensus_7061#1 GTATCTGAATACAAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATC 278 ************ *********************************************** consensus_7061#0 GACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTG 599 consensus_7061#1 GATTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTG 338 ** ********************************************************* consensus_7061#0 CTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTT 659 consensus_7061#1 CTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTT 398 ************************************************************ consensus_7061#0 GCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCA 719 consensus_7061#1 GCTTCCCGAGTGCACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCA 458 ************ *********************************************** consensus_7061#0 TGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGT 779 consensus_7061#1 TGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGT 518 ************************************************************ consensus_7061#0 CAAGGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTAC 839 consensus_7061#1 CAAGGGCAGCGCGGTTTCGTT--------------------------------------- 539 ********************* consensus_7061#0 GTTGAATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATG 899 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 GAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGAC 959 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 GAGCCGCTAATGCGCGAACTGGGCAAGCTGGCCAAGCAGTACAGCCTGAACGTGCAAACG 1019 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 CATGTGTCGGAAAATTTGGGCGAAATTGAAACGGTGAAGCAGCAGTACCCGAGCGCCCCT 1079 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 CACTACTCGGGCGTGTACGATGAGGTTGGACTGCTGACGGACCGGACCGTGCTCGCTCAC 1139 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 GGTGTCCATCTGGAGGACGCCGAGCTGAAGGTGCTGGCCGCCCGTGGCACCTCCGTAGCG 1199 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 CACTGTCCCAGCTCCAACACAAACCTTGGGTCGGGTTTTTGTGACGTTCGGCGCCTGCTG 1259 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 GATGCCCGCGTCAAGGTCGGCCTGGGAACGGACGTGTCCGGTGGAAGCGACATGAGCATA 1319 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 CTGGCAGCAATGCGTGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAA 1379 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 GACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATT 1439 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 CCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCA 1499 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 CTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGAT 1559 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 ACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACC 1619 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 AAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGAAC 1679 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 ATTGTGAAGGTGTACGTTGCGGGCAAACAAATTAAAACATAGGAAAGGTGCCTTTATTAA 1739 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 TTGCCTCGGAAGATATTTTATACCTATAAACCACTCAACAACGAACAAATAAAACAAATA 1799 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 AATTTTT 1806 consensus_7061#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||