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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence
[CAGAATCGCCCGAGGTTAAACGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAGAAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTTTTAATTATTACTTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTCAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGTAGTTAATCTGTTATGATCGTTTTGTCACGACTTNTTTTGTATCTNTTATTTTTNTACTTCGAAGCAGTCATCATTNACGACGGAAAGTACCGTGCAGAANACGTGTGTAGTGTGATGCCCTAGTGTGAGCTGTCNAACTCATGTAAAGCCTAACGCAGTGGTGTGTATGGTTATGCTAANNGGCTTCATAGAGANATCACTTATATTCTCTAAANACAAAACCCAACGCACAAAAGCAANNACCAACACATATAACCTTACTACTNTAACACACCCACANAAATAAACCCCAGCANCAGGACCCAANTCCTAACTAACTNCCCACGAGAAAAAAAAAAAAACAAAANCANAGCANAACCAAACAGCGGGACATNGATTACGACGCGCNCCGNAACAGCNTNATACACCACTATCNAGGNAGGCANCAGGTCCAAACANCAANCNCGCACTGGGAGACACAGGACACCAGGCCCGACACAAAACACANCGGNTCAATGAGACTCTGNGCCAAAA]
[+] EMBL AL931281 [CAGAATCGCCCGAGGTTAAACGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAGAAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTTTTAATTATTACTTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTCAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGTAGTTAATCTGTTATGATCGTTTTGTCACGACTTNTTTTGTATCTNTTATTTTTNTACTTCGAAGCAGTCATCATTNACGACGGAAAGTACCGTGCAGAANACGTGTGTAGTGTGATGCCCTAGTGTGAGCTGTCNAACTCATGTAAAGCCTAACGCAGTGGTGTGTATGGTTATGCTAANNGGCTTCATAGAGANATCACTTATATTCTCTAAANACAAAACCCAACGCACAAAAGCAANNACCAACACATATAACCTTACTACTNTAACACACCCACANAAATAAACCCCAGCANCAGGACCCAANTCCTAACTAACTNCCCACGAGAAAAAAAAAAAAACAAAANCANAGCANAACCAAACAGCGGGACATNGATTACGACGCGCNCCGNAACAGCNTNATACACCACTATCNAGGNAGGCANCAGGTCCAAACANCAANCNCGCACTGGGAGACACAGGACACCAGGCCCGACACAAAACACANCGGNTCAATGAGACTCTGNGCCAAAA]
[+] EMBL BM578883 [ ccGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAGAAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTTTTAATTATTA TTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTT AAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGTAGTTAATCTGTTTTGATCGTTTTGT TCGACTT TTTTGTTTCT TTATTTTT TACTTCGAAGCAGTCATCATTTA GACGGAAAGTACCGTGCAGAA ACGTGTGTAGTGTGATG ]
consensusID : consensus_7064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CACTGGTTTCCCGTCTGCTGGAGTACACGCCGGGCACGAGAATTACTCCGATGCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGTTGTTCAACTTCACCGAGCAAGAGCTTGCCATTCAGCCAAGTCTGAACCTGATTCTGAGGCCCAGAAACCAAAACGAGGCCGCTTCCAAGGCAGGACAATCGTCAAGCGGATCGATGGAAGGTGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTANGAAGC]
[+] EMBL BX623731 [CACTGGTTTCCCGTCTGCTGGAGTACACGCCGGGCACGAGAATTACTCCGATGCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGTTGTTCAACTTCACCGAGCAAGAGCTTGCCATTCAGCCAAGTCTGAACCTGATTCTGAGGCCCAGAAACCAAAACGAGGCCGCTTCCAAGGCAGGACAATCGTCAAGCGGATCGATGGAAGGTGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTANGAAGC]
consensusID : consensus_7064#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[CCGCCCACGCGTCCGGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTAGGAAGCGACTGTGTACAAGTGTTTGCACGCAATTTTGAGAACCACGGCCAGCAAACGGCACACAAAATCAATGAAAAGTTAAAAAAAATTAAGTAGTAAAACCGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATA]
[+] EMBL BM629231 [CCGCCCACGCGTCCGGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTAGGAAGCGACTGTGTACAAGTGTTTGCACGCAATTTTGAGAACCACGGCCAGCAAACGGCACACAAAATCAATGAAAAGTTAAAAAAAATTAAGTAGTAAAACCGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATA]
consensusID : consensus_7064#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[ATATTANCATATATGACTATNAGACATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGGTAAGTTTAATCTGTTTTGATCGTTTTGTTCGACTTTTTTGTTTCTTTATTTTTTACTTCGAAGCAGTCATCATTTAGACGGAAAGTACCGTGCAGAAACGTGTGTAGTGTGATGCCCTAGTGTGAGTGTAAAATCATGTAAAGCCCTACGAGTGGTGTGT]
[+] EMBL BX622515 [ATATTANCATATATGACTATNAGACATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGGTAAGTTTAATCTGTTTTGATCGTTTTGTTCGACTTTTTTGTTTCTTTATTTTTTACTTCGAAGCAGTCATCATTTAGACGGAAAGTACCGTGCAGAAACGTGTGTAGTGTGATGCCCTAGTGTGAGTGTAAAATCATGTAAAGCCCTACGAGTGGTGTGT]
consensusID : consensus_7064#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[CACCCCACCGGAAGCGATCGCACTGGTNTCCCGTCTGCTGGANTACACATCCGGGNACGAGAATTACTCCGATNCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCTGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGNTGTTCANCTTCACCGAGCAAGAGCTTGCCNGTTCATCCAATCTCTGAACCTGATTCTGAGGCCCACAAACCTGAACGAGGCCGCTTCCANGGCAGTGACAATCTGTCAATCCGGATCTGATGGAAGGTGGCACGCGGCAGCAG]
[+] EMBL BX621949 [CACCCCACCGGAAGCGATCGCACTGGTNTCCCGTCTGCTGGANTACACATCCGGGNACGAGAATTACTCCGATNCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCTGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGNTGTTCANCTTCACCGAGCAAGAGCTTGCCNGTTCATCCAATCTCTGAACCTGATTCTGAGGCCCACAAACCTGAACGAGGCCGCTTCCANGGCAGTGACAATCTGTCAATCCGGATCTGATGGAAGGTGGCACGCGGCAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7064#1 ------------------------------------------------------------
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 ------------------------------------------------------------
consensus_7064#0 CAGAATCGCCCGAGGTTAAACGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGAT 60
consensus_7064#3 ------------------------------------------------------------
consensus_7064#1 ------------------------------------------------------------
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 ------------------------------------------------------------
consensus_7064#0 GTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAG 120
consensus_7064#3 ------------------------------------------------------------
consensus_7064#1 ----------------------------------------------------------CA 2
consensus_7064#4 --------------------------------------CACCCCACCGGAAGCGATCGCA 22
consensus_7064#2 --------------------------CCGCCCACGCGTCCGGGCAGCGGCAGCAGTGGCA 34
consensus_7064#0 AAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTT 180
consensus_7064#3 ------------------------------------------------------ATATTA 6
consensus_7064#1 CTGGTT-TCCCGTCTGCTGGAGTACACG-CCGGGCACGAGAATTACTCCGATGCAAGCAT 60
consensus_7064#4 CTGGTN-TCCCGTCTGCTGGANTACACATCCGGGNACGAGAATTACTCCGATNCAAGCAT 81
consensus_7064#2 ACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTA 94
consensus_7064#0 TTAATTATTACTTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGT 240
consensus_7064#3 NCATATATGACTATNAGACATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGT 66
* * * * * *
consensus_7064#1 GTGCCC--ATC-CGTTCTTCA-ACGAATTGC---GAGAAGGCA-GCAAGTATCTGCCGAA 112
consensus_7064#4 GTGCCC--ATC-CGTTCTTCA-ACGAATTGCT--GAGAAGGCA-GCAAGTATCTGCCGAA 134
consensus_7064#2 GTGCCA--GTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAA-TCCTGTAGCGGTGCAG 151
consensus_7064#0 GCAACATGAAAAAATCATTTAAAAAACATGTTCAAAGAAGCAACACAAAGCGACGCGTGG 300
consensus_7064#3 GCAACATGAAAAAATCATTTAAAAAACATGTT-AAAGAAGCAACACAAAGCGACGCGTGG 125
* * * * * ** * * *
consensus_7064#1 CGGTCGCGAATTTC--CACCGTT---GTTCAACTTCACCGAGCAAGAG--CTTGCCA-TT 164
consensus_7064#4 CGGTCGCGAATTTC--CACCGNT---GTTCANCTTCACCGAGCAAGAG--CTTGCCNGTT 187
consensus_7064#2 CTGGTGGTAGCGCCGGCGCTGGC---GTTGGATCGGACGATATGGCAG--CC-GCAAGTG 205
consensus_7064#0 CATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATG-TAG--TTAATCTGTT 357
consensus_7064#3 CATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGGTAAGTTTAATCTGTT 185
* * * ** * * *
consensus_7064#1 CAGCCAAG-TCTGAACCTG--ATTCTGAGGCCCAGAAACC-AAAA--CGAGGCCGCTTCC 218
consensus_7064#4 CATCCAATCTCTGAACCTG--ATTCTGAGGCCCACAAACC-TGAA--CGAGGCCGCTTCC 242
consensus_7064#2 GGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGA--TGGGTTAGCTTTA 263
consensus_7064#0 ATGATCGTTTTGTCACGACTTNTTTTGTATCTNTTATTTTTNTACTTCGAAGCAGTCATC 417
consensus_7064#3 TTGATCGTTTTGTT-CGACTTTTT---TGTTTCTTTATTTTTTACTTCGAAGCAGTCATC 241
* * *
consensus_7064#1 AAGGCAG-GACAATC-GTCAAGC-GGAT-C-GATGGAAGGTGGCA-GCGGCAGCAGTGGC 272
consensus_7064#4 ANGGCAGTGACAATCTGTCAATCCGGAT-CTGATGGAAGGTGGCACGCGGCAGCAG---- 297
consensus_7064#2 ATTGTGT--ACGAACGACAACAACCAGC-CACAAGGAGCAAAATGTGCTTTAAACCTAGA 320
consensus_7064#0 ATTNACGACGGAAAGTACCGTGCAGAANACGTGTGTAGTGTGATGCCCTAGTGTGAGCTG 477
consensus_7064#3 ATTTA-GACGGAAAGTACCGTGCAGAAA-CGTGTGTAGTGTGATGCCCTAGTGTGAG-TG 298
* * * * * *
consensus_7064#1 AACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCT 332
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 GGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACT 380
consensus_7064#0 TCNAACTCATGTAAAGCCTAACGCAGTGGTGTGTATGGTTATGCTAANNGGCTTCATAGA 537
consensus_7064#3 TAAAA-TCATGTAAAGCCCTACG-AGTGGTGTGT-------------------------- 330
consensus_7064#1 AGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCT 392
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 TGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTAGGAAGCGACTGTG 440
consensus_7064#0 GANATCACTTATATTCTCTAAANACAAAACCCAACGCACAAAAGCAANNACCAACACATA 597
consensus_7064#3 ------------------------------------------------------------
consensus_7064#1 GGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGAT 452
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 TACAAGTGTTTGCACGCAATTTTGAGAACCACGGCCAGCAAACGGCACACAAAATCAATG 500
consensus_7064#0 TAACCTTACTACTNTAACACACCCACANAAATAAACCCCAGCANCAGGACCCAANTCCTA 657
consensus_7064#3 ------------------------------------------------------------
consensus_7064#1 GCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACG 512
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 AAAAGTTAAAAAAAATTAAGTAGTAAAACCGAAAGGAAAGGGGATCATCGCACTTGCAAA 560
consensus_7064#0 ACTAACTNCCCACGAGAAAAAAAAAAAAACAAAANCANAGCANAACCAAACAGCGGGACA 717
consensus_7064#3 ------------------------------------------------------------
consensus_7064#1 AACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGC 572
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 CGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATA----- 615
consensus_7064#0 TNGATTACGACGCGCNCCGNAACAGCNTNATACACCACTATCNAGGNAGGCANCAGGTCC 777
consensus_7064#3 ------------------------------------------------------------
consensus_7064#1 ATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCAC 632
consensus_7064#4 ------------------------------------------------------------
consensus_7064#2 ------------------------------------------------------------
consensus_7064#0 AAACANCAANCNCGCACTGGGAGACACAGGACACCAGGCCCGACACAAAACACANCGGNT 837
consensus_7064#3 ------------------------------------------------------------
consensus_7064#1 TCGAACTGGGCGTTACTGTCTGACGTAGACACTANGAAGC 672
consensus_7064#4 ----------------------------------------
consensus_7064#2 ----------------------------------------
consensus_7064#0 CAATGAGACTCTGNGCCAAAA------------------- 858
consensus_7064#3 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||