These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1217 fasta sequence [TAGTCATTATTATAGATTTTCTAGCTACATTTCTTCAGCTTTATTGTACCATCGTTCACCGTA-CATTGCTTTATCAAAGTCGTC-TTTACCCTGCTCCTTAAGAGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCG-AA-CACTTCTCCAGCACGATATCGGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCGGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACAGCCCGCGAATGCAGTCAGTAAGGAACAGTTTTGTGCCGTCGGCAGCACTTCATTGCACACTTGATGGAGCCGCCCTTCGTCGTGCTTAGCAACGCGCTCCATCCATCCCGAAAGGTTAGGCACCTTCGCACGCAGCAAAGCGTTCGTAAGCCGACGCTCAATCAATTCAAATCAGATGTACAACATTAA] [-] EMBL BX620491 [TAGTCATTATTATAGATTTTCTAGCTACATTTCTTCAGCTTTATTGTACCATCGTTCACCGTA CATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGAGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTA ] [+] EMBL CNS08FLZ [ TCAGCTTTATTGTACCATCGTTCACCGTACCATTGCTTTATCAAAGTCGTC TTTGCCCTGCTCCTTACGTGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGATCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCCTTCAGCGCCAACTCCGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCG AA CACTTCTCCAGCACGATGTCGGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCCGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTAT GAGAGATGCCCCGTGCCGGAGCAAAAGTCCACTATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCGTAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATC ] [-] EMBL BX627812 [ TCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTGACTCCNGAANCAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCG AAGCACTTCTCCAGCACGATATCGGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCGGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACAGCCCGCG ] [-] EMBL BX624282 [ nGGTACGTCACATGCTCGATATTGTACAGCTNGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGNNCGNAG CACTTCTNCAGCACGATATCGNTCGCGACACCACACGCGTGCAGCGAGACGCNGATATCGAACCGGGCGGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACA ] [-] EMBL AGA280647 [ TTTGCACAGAATGTCCAACACCTCGGCATGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACAGCCCGCGAATGCAGTCAGTAAGGAACAGTTTTGTGCCGTCGGCAGCACTTCATTGCACACTTGATGGAGCCGCCCTTCGTCGTGCTTAGCAACGCGCTCCATCCATCCCGAAAGGTTAGGCACCTTCGCACGCAGCAAAGCGTTCGTAAGCCGACGCTCAATCAATTCAAATCAGATGTACAACATTAA] consensusID : consensus_7072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TTTTTTTTTTTTTTTTTCTAGCTACATTTCTTCAGCTTTATTGAACCATCGTTCACCGTACATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGTGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAGTCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGCGAAGCACTTCTCCAGCACGATATCGGTCGCGACACCACAC] [+] EMBL AGA281506 [TTTTTTTTTTTTTTTTTCTAGCTACATTTCTTCAGCTTTATTGAACCATCGTTCACCGTACATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGTGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAGTCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGCGAAGCACTTCTCCAGCACGATATCGGTCGCGACACCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7072#0 TAGTCATTATTATAGATTTTCTAGCTACATTTCTTCAGCTTTATTGTACCATCGTTCACC 60 consensus_7072#1 ---TTTTTTTTTTTTTTTTTCTAGCTACATTTCTTCAGCTTTATTGAACCATCGTTCACC 57 * ** ** * ****************************** ************* consensus_7072#0 GTACATTGCTTTATCAAAGTCGTCTTT-ACCCTGCTCCTTAAGAGCATTTCATCTCATAT 119 consensus_7072#1 GTACATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGTGCATTTCATCTCATAT 117 *************************** *************** **************** consensus_7072#0 CCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCA 179 consensus_7072#1 CCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCA 177 ************************************************************ consensus_7072#0 ATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGA 239 consensus_7072#1 GTCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGA 237 *********************************************************** consensus_7072#0 TCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCA 299 consensus_7072#1 TCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCA 297 ************************************************************ consensus_7072#0 GATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTG 359 consensus_7072#1 GATCGTGCGTCTGGTCCGCACAGTGCGCAACGCA-AAGTACTCTTTCAGCGCCAACTCTG 356 ********************************** ************************* consensus_7072#0 ACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGT 419 consensus_7072#1 ACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGT 416 ************************************************************ consensus_7072#0 AACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCGAACACTTCTCCAGCACGATATC 479 consensus_7072#1 AACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGCGAAGCACTTCTCCAGCACGATATC 476 *********************************** * ******************** consensus_7072#0 GGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCGGTAAAGTAGTC 539 consensus_7072#1 GGTCGCGACACCACAC-------------------------------------------- 492 **************** consensus_7072#0 CAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGC 599 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 CCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATG 659 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 AGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATC 719 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 GGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTAT 779 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 GCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTC 839 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 GAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGAC 899 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 TTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAG 959 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 GTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAG 1019 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 CGCATCACAGCCCGCGAATGCAGTCAGTAAGGAACAGTTTTGTGCCGTCGGCAGCACTTC 1079 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 ATTGCACACTTGATGGAGCCGCCCTTCGTCGTGCTTAGCAACGCGCTCCATCCATCCCGA 1139 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 AAGGTTAGGCACCTTCGCACGCAGCAAAGCGTTCGTAAGCCGACGCTCAATCAATTCAAA 1199 consensus_7072#1 ------------------------------------------------------------ consensus_7072#0 TCAGATGTACAACATTAA 1217 consensus_7072#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||