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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1217 fasta sequence
[TAGTCATTATTATAGATTTTCTAGCTACATTTCTTCAGCTTTATTGTACCATCGTTCACCGTA-CATTGCTTTATCAAAGTCGTC-TTTACCCTGCTCCTTAAGAGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCG-AA-CACTTCTCCAGCACGATATCGGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCGGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACAGCCCGCGAATGCAGTCAGTAAGGAACAGTTTTGTGCCGTCGGCAGCACTTCATTGCACACTTGATGGAGCCGCCCTTCGTCGTGCTTAGCAACGCGCTCCATCCATCCCGAAAGGTTAGGCACCTTCGCACGCAGCAAAGCGTTCGTAAGCCGACGCTCAATCAATTCAAATCAGATGTACAACATTAA]
[-] EMBL BX620491 [TAGTCATTATTATAGATTTTCTAGCTACATTTCTTCAGCTTTATTGTACCATCGTTCACCGTA CATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGAGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTA ]
[+] EMBL CNS08FLZ [ TCAGCTTTATTGTACCATCGTTCACCGTACCATTGCTTTATCAAAGTCGTC TTTGCCCTGCTCCTTACGTGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGATCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCCTTCAGCGCCAACTCCGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCG AA CACTTCTCCAGCACGATGTCGGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCCGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTAT GAGAGATGCCCCGTGCCGGAGCAAAAGTCCACTATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCGTAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATC ]
[-] EMBL BX627812 [ TCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTGACTCCNGAANCAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCG AAGCACTTCTCCAGCACGATATCGGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCGGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACAGCCCGCG ]
[-] EMBL BX624282 [ nGGTACGTCACATGCTCGATATTGTACAGCTNGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGNNCGNAG CACTTCTNCAGCACGATATCGNTCGCGACACCACACGCGTGCAGCGAGACGCNGATATCGAACCGGGCGGTAAAGTAGTCCAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGCCCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATGAGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATCGGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTATGCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTCGAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGACTTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACA ]
[-] EMBL AGA280647 [ TTTGCACAGAATGTCCAACACCTCGGCATGGTTCGTTGTCAGCACTTGGTCGCCCTTCAGGTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAGCGCATCACAGCCCGCGAATGCAGTCAGTAAGGAACAGTTTTGTGCCGTCGGCAGCACTTCATTGCACACTTGATGGAGCCGCCCTTCGTCGTGCTTAGCAACGCGCTCCATCCATCCCGAAAGGTTAGGCACCTTCGCACGCAGCAAAGCGTTCGTAAGCCGACGCTCAATCAATTCAAATCAGATGTACAACATTAA]
consensusID : consensus_7072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[TTTTTTTTTTTTTTTTTCTAGCTACATTTCTTCAGCTTTATTGAACCATCGTTCACCGTACATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGTGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAGTCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGCGAAGCACTTCTCCAGCACGATATCGGTCGCGACACCACAC]
[+] EMBL AGA281506 [TTTTTTTTTTTTTTTTTCTAGCTACATTTCTTCAGCTTTATTGAACCATCGTTCACCGTACATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGTGCATTTCATCTCATATCCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCAGTCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGATCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCAGATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAAAGTACTCTTTCAGCGCCAACTCTGACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGTAACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGCGAAGCACTTCTCCAGCACGATATCGGTCGCGACACCACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7072#0 TAGTCATTATTATAGATTTTCTAGCTACATTTCTTCAGCTTTATTGTACCATCGTTCACC 60
consensus_7072#1 ---TTTTTTTTTTTTTTTTTCTAGCTACATTTCTTCAGCTTTATTGAACCATCGTTCACC 57
* ** ** * ****************************** *************
consensus_7072#0 GTACATTGCTTTATCAAAGTCGTCTTT-ACCCTGCTCCTTAAGAGCATTTCATCTCATAT 119
consensus_7072#1 GTACATTGCTTTATCAAAGTCGTCTTTTACCCTGCTCCTTAAGTGCATTTCATCTCATAT 117
*************************** *************** ****************
consensus_7072#0 CCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCA 179
consensus_7072#1 CCCCCTCACCATAGATCCCAACCAGGAGCCGATTTTTGGGCGTACAGCTTTCATCCTTCA 177
************************************************************
consensus_7072#0 ATCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGA 239
consensus_7072#1 GTCGCTTGCGCAACACCTTGTACCCGAGCTCTTCGGCACGTAGCGCCCGGTCCCGGTCGA 237
***********************************************************
consensus_7072#0 TCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCA 299
consensus_7072#1 TCACGTCCATGCAGTAGAAACCCTGGTGCGCTTTCGCCACATTCGTCCTGTCGCTGGCCA 297
************************************************************
consensus_7072#0 GATCGTGCGTCTGGTCCGCACAGTGCGCAACGCAGAAGTACTCTTTCAGCGCCAACTCTG 359
consensus_7072#1 GATCGTGCGTCTGGTCCGCACAGTGCGCAACGCA-AAGTACTCTTTCAGCGCCAACTCTG 356
********************************** *************************
consensus_7072#0 ACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGT 419
consensus_7072#1 ACTCCCGAAACAGGCGACTCCTCGGGTACGTCACATGCTCGATATTGTACAGCTTGCCGT 416
************************************************************
consensus_7072#0 AACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGGCGAACACTTCTCCAGCACGATATC 479
consensus_7072#1 AACAGCACGGACAGCTAACAAAGTGTGCCCGGTGGCGAAGCACTTCTCCAGCACGATATC 476
*********************************** * ********************
consensus_7072#0 GGTCGCGACACCACACGCGTGCAGCGAGACGCCGATATCGAACCGGGCGGTAAAGTAGTC 539
consensus_7072#1 GGTCGCGACACCACAC-------------------------------------------- 492
****************
consensus_7072#0 CAAATTGCACTGGAAAAACACCACATTGCGAAGGGCAAGCCGTTCCACACGCTCCATCGC 599
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 CCGCTGCTGCGATTCCTCCTTGTTCTCCAGCAGATAGACGGTGCAGCGAGGCAGCAGATG 659
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 AGCAAGCAGTATACCGAGGTGTCCCGTGCCGGAGCAAAAGTCCACGATAATCGCACCATC 719
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 GGTGGCCAGCCGCATTACCTCGTTGACTAAGCTTTCCAGCTGATGGCGCTTGCGCAGTAT 779
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 GCGAGCGGGTGGCAGCTTGCCGCCCTCCGGTCTCGCCTCAACCGGTACCGTGTCCCACTC 839
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 GAACCGGTTCGTCGCCCAATCGTTCACCGCGCTACCGATGTCGGTGGGGATCCGGTCGAC 899
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 TTTGCACAGAATGTCCAACACCTCGGCCTGGTTCGTTGTCAGCACTTGGTCGCCCTTCAG 959
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 GTTCAGCTTCTTGGTGTCGGATTTGTACAGGCTGAATTCTTGTGGTATTTCCAGCACCAG 1019
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 CGCATCACAGCCCGCGAATGCAGTCAGTAAGGAACAGTTTTGTGCCGTCGGCAGCACTTC 1079
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 ATTGCACACTTGATGGAGCCGCCCTTCGTCGTGCTTAGCAACGCGCTCCATCCATCCCGA 1139
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 AAGGTTAGGCACCTTCGCACGCAGCAAAGCGTTCGTAAGCCGACGCTCAATCAATTCAAA 1199
consensus_7072#1 ------------------------------------------------------------
consensus_7072#0 TCAGATGTACAACATTAA 1217
consensus_7072#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||