cluster # 7090

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Anopheles gambiae
cluster # 7090 cluster # 7090 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7090#0 length = 1114 sequences # 5

consensus_7090#1 length = 629 sequences # 1

consensusID : consensus_7090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1114
fasta sequence

                              [AGAGAAAAAGGTACCATCTATCTCGTGCGTGGCTCGTCGCTCTTCCGCTATCGCGTACCGGATAAAACCGTCCTGTTAAGGCCCCAATCCTATTCTCCCGCGTGCCAGGATATCTTGCTATCTTGCATGTGTATATTCCTATGTTCTGTGTTTGTTTTTTTTTCGATTCCGTTTTTCCGATGTGAAAATAAGGTTCCATTTTCCTATTCCGTTTTTTCCATGGTAGTTTATATATCAACAACAACAAAAAACCAACATAACATGCATATTTCTTCCTTTTTCTTTTTCCTTCACTTTAGTTTTGTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTAAAATAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGCTGTAACCTCCTTGCCGTAACTGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTACTTTGATCGGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTTTGTTTTGTTTTACCTCATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACGTATTTGACGCTTTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTTGCTAGTGTTTTGTTTGTATATATCTTCTACCACACATTTGCTGCGTGTGGGTGTGTGTTTGTGTGTGTTTCTCTCCTTAGTTCTTCCACTCGTCCCCCCAATCTTACTTTCTAAATACTCTGTAAATCCAGAATCACACATATTTGCACTGTACAACAATTCGCGTATAAAAGTAATAAAATAATAATAGTTATATTAATTCATCGACAAAACGAAAAACCTGTATATATATATAGCTGAAGCGGCACTGATGCGTTATCACCCTAACCTCTCTCCTCATTCCCTTGCCCTACAATCATCTTTTAGCGTGTTTTTTTGTTGTGGTTGTAAATTTACTAGCAAATATCGTTGTCCCTCATCTCACGCTTCCCAAAAAGGCCTCAAATTTCCCGTTTGCTTGTGTGTGTATATCTTGTTTTTAATAGTTTTGTTTCTAAGAGCCCTTTGTGTTGTATTAACCCC]

[-] EMBL BM643941             [AGAGAAAAAGGTACCATCTATCTCGTGCGTGGCTCGTCGCTCTTCCGCTATCGCGTACCGGATAAAACCGTCCTGTTAAGGCCCCAATCCTATTCTCCCGCGTGCCAGGATATCTTGCTATCTTGCATGTGTATATTCCTATGTTCTGTGTTTGTTTTTTTTTCGATTCCGTTTTTCCGATGTGAAAATAAGGTTCCATTTTCCTATTCCGTTTTTTCCATGGTAGTTTATATATCAACAACAACAAAAAACCAACATAACATGCATATTTCTTCCTTTTTCTTTTTCCTTCACTTTAGTTTTGTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTAAAATAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGCTGTAACCTCCTTGCCGTAACTGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTACTTTGATCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BX620120             [                                                                                                                                                                                                                                                                                                                                                                                                                                   CTTGCCGTAGCTGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTACTTTGATGTGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTTTGTTTTGTTTTACCTCATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACGTATTTGACGCTTTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTTGCTAGTGTTTTGTTTGTATATATCTTCTACCACACATTTGCTGCGTGTGGGTGTGTGTTTGTGTGTGTTTCTCTCCTTAGTTCTTCCACTCGTCCCCCCAATCTTACTTTCTAAATACTCTGTAAATCCAGAATCACACATATTTGCACTGTACAACAATTCGCGTATAAAAGTAATAAAATAATAATAGTTATATTAATTCATCGACAAAACGAAAAACCTGTATATATATATAGCTGAAGCGGCACTGATGCGTTATCACCCTAACCTCTCTCCTCATTCCCTTGCCCTACAATCATCTTTTAGCGTGTTTTTTTGTTGTGGTTGTAAATTTACTAGCAAATATCGTTGTCCCTCATCTCACGCTTCCCAAAAAGGCCT                                                                                 ]
[-] EMBL BX612505             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AATACTCTGTAAATCCAGAATCACACATATTTGCACTGTACAACAATTCGCGTATAAAAGTAATAAAATAATAATAGTTATATTAATTCATAGA                                                                                                                                                                                                                                                               ]
[-] EMBL BX613124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATACTCTGTAAATCCAGAATCACACATATTTGCACTGTACAACAATTCGCGTATAAAAGTAATAAAATAATAATAGTTATATTAATTCATCGACAAAACGAAAACCCTGTATATATATATAGCTGAAGCGGCCCTGATGCGTTATCACCCTAACCTCTCTCCTCATTCCCT                                                                                                                                                                                 ]
[-] EMBL BX613799             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAAATTTACTAGCAAATATCGTTGTCCCTCATCTCACGCTTCCCAAAAAGGCCTCAAATTTCCCGTTTGCTTGTGTGTGTATATCTTGTTTTTAATAGTTTTGTTTCTAAGAGCCCTTTGTGTTGTATTAACCCC]




>consensus_7090#0
AGAGAAAAAGGTACCATCTATCTCGTGCGTGGCTCGTCGCTCTTCCGCTATCGCGTACCG
GATAAAACCGTCCTGTTAAGGCCCCAATCCTATTCTCCCGCGTGCCAGGATATCTTGCTA
TCTTGCATGTGTATATTCCTATGTTCTGTGTTTGTTTTTTTTTCGATTCCGTTTTTCCGA
TGTGAAAATAAGGTTCCATTTTCCTATTCCGTTTTTTCCATGGTAGTTTATATATCAACA
ACAACAAAAAACCAACATAACATGCATATTTCTTCCTTTTTCTTTTTCCTTCACTTTAGT
TTTGTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTA
AAATAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGCTGTAACCTCC
TTGCCGTAACTGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTAC
TTTGATCGGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTTTGTTTTGT
TTTACCTCATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACGTATT
TGACGCTTTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTTGCTAGTGT
TTTGTTTGTATATATCTTCTACCACACATTTGCTGCGTGTGGGTGTGTGTTTGTGTGTGT
TTCTCTCCTTAGTTCTTCCACTCGTCCCCCCAATCTTACTTTCTAAATACTCTGTAAATC
CAGAATCACACATATTTGCACTGTACAACAATTCGCGTATAAAAGTAATAAAATAATAAT
AGTTATATTAATTCATCGACAAAACGAAAAACCTGTATATATATATAGCTGAAGCGGCAC
TGATGCGTTATCACCCTAACCTCTCTCCTCATTCCCTTGCCCTACAATCATCTTTTAGCG
TGTTTTTTTGTTGTGGTTGTAAATTTACTAGCAAATATCGTTGTCCCTCATCTCACGCTT
CCCAAAAAGGCCTCAAATTTCCCGTTTGCTTGTGTGTGTATATCTTGTTTTTAATAGTTT
TGTTTCTAAGAGCCCTTTGTGTTGTATTAACCCC

consensusID : consensus_7090#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [GCGCACATGCTGTCCTTTGTGTTNTAATTTTTTTTTTTCTTTTTCCTTCACTTTAGTTTTGTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTAAAATAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGTTACCTCCTTGCCGTAGCGGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTACTTTGATGTGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTATGTTTGTTTTACCTCATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACATATTTGACGCTTTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTGGCTAGTGTTTNGTTATGTATATATCTTCTACCACACATTTGCTGCGATGTGGGTGCTGTGTTACAGATGTAGATGTGTTTACTCTCCTTAGTTACTTCCACTCGGTACCCCCCAATCTTACTATATCTAAAGTACTCTGGTAAATCCAGAATCACACATATTTGCACNGTGTTACAACAATTNCGGCGTATAACAAGGTAATTANAGAGTCATAAGTAGGTTAT]

[+] EMBL BX466814             [GCGCACATGCTGTCCTTTGTGTTNTAATTTTTTTTTTTCTTTTTCCTTCACTTTAGTTTTGTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTAAAATAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGTTACCTCCTTGCCGTAGCGGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTACTTTGATGTGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTATGTTTGTTTTACCTCATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACATATTTGACGCTTTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTGGCTAGTGTTTNGTTATGTATATATCTTCTACCACACATTTGCTGCGATGTGGGTGCTGTGTTACAGATGTAGATGTGTTTACTCTCCTTAGTTACTTCCACTCGGTACCCCCCAATCTTACTATATCTAAAGTACTCTGGTAAATCCAGAATCACACATATTTGCACNGTGTTACAACAATTNCGGCGTATAACAAGGTAATTANAGAGTCATAAGTAGGTTAT]




>consensus_7090#1
GCGCACATGCTGTCCTTTGTGTTNTAATTTTTTTTTTTCTTTTTCCTTCACTTTAGTTTT
GTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTAAAA
TAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGTTACCTCCTTGCCG
TAGCGGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTACTTTGAT
GTGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTATGTTTGTTTTACCT
CATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACATATTTGACGCT
TTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTGGCTAGTGTTTNGTTA
TGTATATATCTTCTACCACACATTTGCTGCGATGTGGGTGCTGTGTTACAGATGTAGATG
TGTTTACTCTCCTTAGTTACTTCCACTCGGTACCCCCCAATCTTACTATATCTAAAGTAC
TCTGGTAAATCCAGAATCACACATATTTGCACNGTGTTACAACAATTNCGGCGTATAACA
AGGTAATTANAGAGTCATAAGTAGGTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7090#0      AGAGAAAAAGGTACCATCTATCTCGTGCGTGGCTCGTCGCTCTTCCGCTATCGCGTACCG 60
consensus_7090#1      ------------------------------------------------------------
                                                                                  

consensus_7090#0      GATAAAACCGTCCTGTTAAGGCCCCAATCCTATTCTCCCGCGTGCCAGGATATCTTGCTA 120
consensus_7090#1      ------------------------------------------------------------
                                                                                  

consensus_7090#0      TCTTGCATGTGTATATTCCTATGTTCTGTGTTTGTTTTTTTTTCGATTCCGTTTTTCCGA 180
consensus_7090#1      ------------------------------------------------------------
                                                                                  

consensus_7090#0      TGTGAAAATAAGGTTCCATTTTCCTATTCCGTTTTTTCCATGGTAGTTTATATATCAACA 240
consensus_7090#1      ------------------------------------------------------------
                                                                                  

consensus_7090#0      ACAACAAAAAACCAACATAACATGCATATTTCTTCCTTTTTCTTTTTCCTTCACTTTAGT 300
consensus_7090#1      ---GCGCACATGCTGTCCTTTGTGTTNTAATTTTTTTTTTTCTTTTTCCTTCACTTTAGT 57
                          *  * *  *         **      * **  ************************

consensus_7090#0      TTTGTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTA 360
consensus_7090#1      TTTGTTTTCCAGTGAGTTTGCTTCTGCTTTTATTTCGTCTTGTAACACGTCGTGCTTTTA 117
                      ************************************************************

consensus_7090#0      AAATAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGCTGTAACCTCC 420
consensus_7090#1      AAATAGTTTGCTTCTGCTACTGTTGTATGTAAAGTGTTTTCCTTTGTTGTT---ACCTCC 174
                      ************************************************* *   ******

consensus_7090#0      TTGCCGTAACTGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTAC 480
consensus_7090#1      TTGCCGTAGCGGTGTGTTTTCCCCCTCACCATTCACTGCCCTGTTCACCTTTGCATTTAC 234
                      ******** * *************************************************

consensus_7090#0      TTTGATCGGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTTTGTTTTGT 540
consensus_7090#1      TTTGATGTGTTTCCATTTCTCATCTCTTTTGTTACTATTTCATTGCTTTTTATGTTT-GT 293
                      ******  ******************************************* ***** **

consensus_7090#0      TTTACCTCATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACGTATT 600
consensus_7090#1      TTTACCTCATTTTTAGTTCGTTTCTATCTTTACCTTTACATTCGATTGTCTGAACATATT 353
                      ******************************************************* ****

consensus_7090#0      TGACGCTTTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTTGCTAGTGT 660
consensus_7090#1      TGACGCTTTCGATTCTACTGAGAGTATTATTATGCTTCAGAATACGGGTTTGGCTAGTGT 413
                      *************************************************** ********

consensus_7090#0      TTTGTT-TGTATATATCTTCTACCACACATTTGCTGCG-TGTGGGTG-TGTGTT------ 711
consensus_7090#1      TTNGTTATGTATATATCTTCTACCACACATTTGCTGCGATGTGGGTGCTGTGTTACAGAT 473
                      ** *** ******************************* ******** ******      

consensus_7090#0      -TGTGTGTGTTT-CTCTCCTTAGTT-CTTCCACTCGT--CCCCCCAATCTTACTTTCT-- 764
consensus_7090#1      GTAGATGTGTTTACTCTCCTTAGTTACTTCCACTCGGTACCCCCCAATCTTACTATATCT 533
                       *   ******* ************ **********   *************** * *  

consensus_7090#0      -AAATACTCTG-TAAATCCAGAATCACACATATTTGCACTGT---ACAACAATTC--GCG 817
consensus_7090#1      AAAGTACTCTGGTAAATCCAGAATCACACATATTTGCACNGTGTTACAACAATTNCGGCG 593
                       ** ******* *************************** **   *********   ***

consensus_7090#0      TATAA--AAGTAATAAAATAATAATAGTTATATTAATTCATCGACAAAACGAAAAACCTG 875
consensus_7090#1      TATAACAAGGTAATTANAGAGTCATAAGTAGGTTAT------------------------ 629
                      *****  * ***** * * * * ***  **  ***                         

consensus_7090#0      TATATATATATAGCTGAAGCGGCACTGATGCGTTATCACCCTAACCTCTCTCCTCATTCC 935
consensus_7090#1      ------------------------------------------------------------
                                                                                  

consensus_7090#0      CTTGCCCTACAATCATCTTTTAGCGTGTTTTTTTGTTGTGGTTGTAAATTTACTAGCAAA 995
consensus_7090#1      ------------------------------------------------------------
                                                                                  

consensus_7090#0      TATCGTTGTCCCTCATCTCACGCTTCCCAAAAAGGCCTCAAATTTCCCGTTTGCTTGTGT 1055
consensus_7090#1      ------------------------------------------------------------
                                                                                  

consensus_7090#0      GTGTATATCTTGTTTTTAATAGTTTTGTTTCTAAGAGCCCTTTGTGTTGTATTAACCCC 1114
consensus_7090#1      -----------------------------------------------------------