These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [ATCGCCCGAGTNCAGAACATATCCAGTCGTACGTGCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAAGTGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCGAGATGCGGTCAGCCTCATAAATGGTTATCTGACTGCGCAAAGACAGACTTCACGGACGAGGGCATCCATCTGCTGTATACGCTGTAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGNCGTTGCATTCAGACTAGTGCCAAGGGCTCTCGATATGGAATGGTGCGAAAGCGCCCGAGTCGGGGCTGCGTGAAGCCCGACCTCGTGATACTGTCTTACTCTGTCGATGGATGCTCTGNGCGCAGGCGCGGGGGCTTCGGTGACCGAGCGGTTATGAAGTGGCCGGCTTTCAGAAGAAGGTGATGGAGCGGTATGGCNTGCTGAAGGATGACCGCTACTGGAAAGCGATTGACGCCGATAAGACATTCGACGATGTTACCGCAGTTCTTTACGAGGAGGTGCTACGTGCAATTGAACATTCCGGCGACAAGCCGTTAGAGAAGTTATGGTAAATGTTGTCCATGTCCCCGCAACGGTATGCATCGTGCATTTAAGATAAGCTTATAAAGTGTTAAAATTGTAATAAGAAGACCATGTTGCATGTAGAACCAAAAGATGCAGAGAAGTTCGTTATCATATACGATGTTTGAAATACATTTTTAAGGAAAGGTGAAGTTGAATTGATAAAAAAA] [+] EMBL AL930293 [ATCGCCCGAGTNCAGAACATATCCAGTCGTACGTGCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAAGTGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCGAGATGCGGTCAGCCTCATAAATGGTTATCTGACTGCGCAAAGACAGACTTCACGGACGAGGGCATCCATCTGCTGTATACGCTGTAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGNCGTTGCATTCAGACTAGTGCCAAGGGCTCTCGATATGGAATGGTGCGAAAGCGCCCGAGTCGGGGCTGCGTGAAGCCCGACCTCGTGATACTGTCTTACTCTGTCGATGGATGCTCTGNGCGCAGGCGCGGGGGCTTCGGTGACCGAGCGGTTATGAAGTGGCCGGCTTTCAGAAGAAGGTGATGGAGCGGTATGGCNTGCTGAAGGATGAC ] [-] EMBL AGA280480 [ GGATGCTCTG GCG AGGCGCGGGGGCTTCGGTGA CGAGCGG TATGAAGTGGCCGGCTTTCAGAAGAAGGTGATTGAGCGGTATGGCATGCTGAAGGATGACCGCTACTGGAAAGCGATTGACGCCGATAAGACATTCGACGATGTTACCGCAGTTCTTTACGAGGAGGTGCTACGTGCAATTGAACATTCCGGCGACAAGCCGTTAGAGAAGTTATGGTAAATGTTGTCCATGTCCCCGCAACGGTATGCATCGTGCATTTAAGATAAGCTTATAAAGTGTTAAAATTGTAATAAGAAGACCATGTTGCATGTAGAACCAAAAGATGCAGAGAAGTTCGTTATCATATACGATGTTTGAAATACATTTTTAAGGAAAGGTGAAGTTGAATTGATAAAAAAA] consensusID : consensus_7096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 511 fasta sequence [CCGCCCACGCGTCCGCAACTTGCCAAATTGCTGTCGGCACAAGTGCGCCAAAATACC-AGAACCATATCCAGTCGTACGTTCGATAAAATGCCGG-AATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAATGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAGCAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCGTGATACTGCTTACTCTGTCGATGGATGCTC] [+] EMBL BM603359 [CCGCCCACGCGTCCGCAACTTGCCAAATTGCTGTCGGCACAAGTGCGCCAAAATACC AGAACCATATCCAGTCGTACGTTCGATAAAATGCCGG AATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAATGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACTAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAGCAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCGTGATACTGCTTACTCTGTCGATGGATGC ] [+] EMBL BM643601 [ ccgGGCACAAGTGCGCCAAAATACCAAGAACCATATCCAGTCGTACGTTCGATAAGATGCCGGTAATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAATGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACACTGAATCGCTGGGAACGGATGAAGGATATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAACAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCGTGATACTGCTTACTCTGTCGATGGATGCTC] [+] EMBL AGA282184 [ CGCAATGCAAAACGCTGGCTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAGCAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCG ] [+] EMBL BX624240 [ nATGCNAAACGCTGGTTGAC AATTGATGCAGGCGAACATACGGGCCCAGTACATGAACTTGCCGGACCGATCGACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTNTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCGGGCGTCAACCTGATCGTNGATCGGTACTCCTACTCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7096#0 -------------------------------------------ATCGCCCGAGTNC-AGA 16 consensus_7096#1 CCGCCCACGCGTCCGCAACTTGCCAAATTGCTGTCGGCACAAGTGCGCCAAAATACCAGA 60 **** * * * *** consensus_7096#0 AC-ATATCCAGTCGTACGTGCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTT 75 consensus_7096#1 ACCATATCCAGTCGTACGTTCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTT 120 ** **************** **************************************** consensus_7096#0 ATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAAGTGCAAAACGCTGGTTGA 135 consensus_7096#1 ATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAA-TGCAAAACGCTGGTTGA 179 ****************************************** ***************** consensus_7096#0 CAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCG 195 consensus_7096#1 CAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCA 239 *********************************************************** consensus_7096#0 AGATGCGGTCAGCCTCATAAATGGTTATCTGACTGCGCAAAGACAGACTTCACGGACGAG 255 consensus_7096#1 G--TGCGGTCAGC-TGATAAATGGTTATCTGAC-GCGCAAAGAC-GACTTCACGGACGAG 294 ********** * ***************** ********** *************** consensus_7096#0 GGCATCCATCTGCTGTATACGCTGTAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCT 315 consensus_7096#1 GGCATCCATCTGCTGTTTACGCTG-AATCGCTGGGAACGGATGAAGGAGATGGAGAAGCT 353 **************** ******* *********************************** consensus_7096#0 GCTGAAGGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGNCGTTGCATTC 375 consensus_7096#1 GCTGAAGG-CTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGC-GTTGCATTC 411 ******** **************************************** ********* consensus_7096#0 AGACTAGTGCCAAGGGCTCTCGATATGGAATGGTGCGAAAGCGCCCGAGTCGGGGCTGCG 435 consensus_7096#1 AG--CAGTGCCAAGGG-TCTCGATATGGAATGGTGC-AAAGCGCCCGAGTCGGGGCTGC- 466 ** *********** ******************* ********************** consensus_7096#0 TGAAGCCCGACCTCGTGATACTGTCTTACTCTGTCGATGGATGCTCTGNGCGCAGGCGCG 495 consensus_7096#1 TGAAGCCCGACCTCGTGATACTG-CTTACTCTGTCGATGGATGCTC-------------- 511 *********************** ********************** consensus_7096#0 GGGGCTTCGGTGACCGAGCGGTTATGAAGTGGCCGGCTTTCAGAAGAAGGTGATGGAGCG 555 consensus_7096#1 ------------------------------------------------------------ consensus_7096#0 GTATGGCNTGCTGAAGGATGACCGCTACTGGAAAGCGATTGACGCCGATAAGACATTCGA 615 consensus_7096#1 ------------------------------------------------------------ consensus_7096#0 CGATGTTACCGCAGTTCTTTACGAGGAGGTGCTACGTGCAATTGAACATTCCGGCGACAA 675 consensus_7096#1 ------------------------------------------------------------ consensus_7096#0 GCCGTTAGAGAAGTTATGGTAAATGTTGTCCATGTCCCCGCAACGGTATGCATCGTGCAT 735 consensus_7096#1 ------------------------------------------------------------ consensus_7096#0 TTAAGATAAGCTTATAAAGTGTTAAAATTGTAATAAGAAGACCATGTTGCATGTAGAACC 795 consensus_7096#1 ------------------------------------------------------------ consensus_7096#0 AAAAGATGCAGAGAAGTTCGTTATCATATACGATGTTTGAAATACATTTTTAAGGAAAGG 855 consensus_7096#1 ------------------------------------------------------------ consensus_7096#0 TGAAGTTGAATTGATAAAAAAA 877 consensus_7096#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||