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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 983 fasta sequence
[CGACCCACGCGTCCGGAACAGGAAGCGGAACGTACGGCCAACGGTAGCGCGACCGGTTACTGCAACGATAAGGACAAAGTACCGGCCCTGGTACACTATCCGGACAATCTGCATCCGGTCGATCTGTTCTACTTCCTGCTGGCGCCGACCCTCTGCTACGAGCTGAACTTCCCCAAGACGAACCGCATCCGGAAGCGGTTCCTGATCAAACGCATGCTGGAGGTGGTGATCGGGGTGCACATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTT-TTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAGAGAGAGGAAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCACGTAATCTACATTCACACACACACAGACTGCTGTCCATCATCGTTCCA]
[+] EMBL BM631452 [CGACCCACGCGTCCGGAACAGGAAGCGGAACGTACGGCCAACGGTAGCGCGACCGGTTACTGCAACGATAAGGACAAAGTACCGGCCCTGGTACACTATCCGGACAATCTGCATCCGGTCGATCTGTTCTACTTCCTGCTGGCGCCGACCCTCTGCTACGAGCTGAACTTCCCCAAGACGAACCGCATCCGGAAGCGGTTCCTGATCAAACGCATGCTGGAGGTGGTGATCGGGGTGCACATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACTTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGA ]
[+] EMBL BX602817 [ GGGGTGCACATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGAT GGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTCTTCTTCAGC ]
[+] EMBL BX613686 [ ATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTT TTCTTCAGCGCCTTCT ]
[+] EMBL BX612663 [ CGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTT TTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAGAGAGAGGAAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCACGTAATCTACATTCACACACACACAGACTGCTGTCCATCATCGTTCCA]
consensusID : consensus_7098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[AGAATCCCCGAGGTTTGGCTGTGCTTCTTCTACCTGACGTTCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCTGGGATGATGGCACAGATCCCGCTCTCGTTCGTTTGCCAAGTACATGGAGACTGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCTGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAATACAACGATGTGCTGGTTGTAACGAGGGGATACACTTTTTTGACTACACCATTGTGCCAAAACAGAGAGCAGGNCAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACANATCACGTAATCTACATTCACACACACACAGACTGCTTGTCCATCAGTCGTTCCACGGTCCGTCTGCCGAAGATCGCCAAGTTTGTACATCTTTTCGATAAATGCCGGTATTTTTGGTAGCACGGGNTAAAANAGACACAATAGAAGANAGAAAAAAAACAGGTGCGNTTTGTTAGCCTGGGCCCGACAAAGCGCGTTATAACCCCTTTTAGGTAGACGNGGGTTAGAATCTTATACAGCCTATGGGCAANATCGGNACCGCTCGCGTATTAACAACCNGNTTCCTTGAACCTTGGGCAAAAA]
[+] EMBL AL931985 [AGAATCCCCGAGGTTTGGCTGTGCTTCTTCTACCTGACGTTCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCTGGGATGATGGCACAGATCCCGCTCTCGTTCGTTTGCCAAGTACATGGAGACTGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCTGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAATACAACGATGTGCTGGTTGTAACGAGGGGATACACTTTTTTGACTACACCATTGTGCCAAAACAGAGAGCAGGNCAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACANATCACGTAATCTACATTCACACACACACAGACTGCTTGTCCATCAGTCGTTCCACGGTCCGTCTGCCGAAGATCGCCAAGTTTGTACATCTTTTCGATAAATGCCGGTATTTTTGGTAGCACGGGNTAAAANAGACACAATAGAAGANAGAAAAAAAACAGGTGCGNTTTGTTAGCCTGGGCCCGACAAAGCGCGTTATAACCCCTTTTAGGTAGACGNGGGTTAGAATCTTATACAGCCTATGGGCAANATCGGNACCGCTCGCGTATTAACAACCNGNTTCCTTGAACCTTGGGCAAAAA]
consensusID : consensus_7098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GCAGAATCGGCACGAGGGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAAGAGAGAGGAAGANAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCANCGTAATTCTACATT]
[+] EMBL BX469875 [GCAGAATCGGCACGAGGGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAAGAGAGAGGAAGANAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCANCGTAATTCTACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7098#0 CGACCCACGCGTCCGGAACAGGAAGCGGAACGTACGGCCAACGGTAGCGCGACCGGTTAC 60
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 ------------------------------------------------------------
consensus_7098#0 TGCAACGATAAGGACAAAGTACCGGCCCTGGTACACTATCCGGACAATCTGCATCCGGTC 120
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 ------------------------------------------------------------
consensus_7098#0 GATCTGTTCTACTTCCTGCTGGCGCCGACCCTCTGCTACGAGCTGAACTTCCCCAAGACG 180
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 ------------------------------------------------------------
consensus_7098#0 AACCGCATCCGGAAGCGGTTCCTGATCAAACGCATGCTGGAGGTGGTGATCGGGGTGCAC 240
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 ------------------------------------------------------------
consensus_7098#0 ATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCG 300
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 ------------------------------------------------------------
consensus_7098#0 TTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAAC 360
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 ------------------------------------------------------AGAATC 6
consensus_7098#0 CATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGC 420
consensus_7098#2 ---------------------------------GCAGAATCGGCACGAGG---GATGGGC 24
consensus_7098#1 CCCGAGGTTTGGCTGTGCTTCTTCTACCTGACGTTC-ACTCGTTCCTAAATCTGATGGGC 65
* *** * * *******
consensus_7098#0 GAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATC 480
consensus_7098#2 GAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATC 84
consensus_7098#1 GAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATC 125
************************************************************
consensus_7098#0 GACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTAC 540
consensus_7098#2 GACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTAC 144
consensus_7098#1 GACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTAC 185
************************************************************
consensus_7098#0 ATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTC 600
consensus_7098#2 ATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTC 204
consensus_7098#1 ATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTC 245
************************************************************
consensus_7098#0 AGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCA 660
consensus_7098#2 AGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCA 264
consensus_7098#1 AGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCA 305
************************************************************
consensus_7098#0 TTCACC-GGGATGATGGCACAGATCCCGCTCTCGTTCGTT-GCCAAGTACATGGAGAC-G 717
consensus_7098#2 TTCACC-GGGATGATGGCACAGATCCCGCTCTCGTTCGTT-GCCAAGTACATGGAGAC-G 321
consensus_7098#1 TTCACCTGGGATGATGGCACAGATCCCGCTCTCGTTCGTTTGCCAAGTACATGGAGACTG 365
****** ********************************* ***************** *
consensus_7098#0 AACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACC- 776
consensus_7098#2 AACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACC- 380
consensus_7098#1 AACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCT 425
***********************************************************
consensus_7098#0 GTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGT 836
consensus_7098#2 GTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGT 440
consensus_7098#1 GTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAA-TACAACGATGTGCTGGT 484
****************************************** *****************
consensus_7098#0 -GTAA-GAGGGGATACACTTTTT-GACTACACCATTGTGCCAAAAA-GAGAG--AGGAAG 890
consensus_7098#2 -GTAA-GAGGGGATACACTTTTT-GACTACACCATTGTGCCAAAAAAGAGAG--AGGAAG 495
consensus_7098#1 TGTAACGAGGGGATACACTTTTTTGACTACACCATTGTGCCAAAACAGAGAGCAGGNCAG 544
**** ***************** ********************* ***** * **
consensus_7098#0 AGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCAC-GTAAT-CTACATT 948
consensus_7098#2 ANAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCANCGTAATTCTACATT 555
consensus_7098#1 AGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACANATCAC-GTAAT-CTACATT 602
* ************************************** **** ***** *******
consensus_7098#0 CACACACACACAGACTGCT-GTCCATCA-TCGTTCCA----------------------- 983
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 CACACACACACAGACTGCTTGTCCATCAGTCGTTCCACGGTCCGTCTGCCGAAGATCGCC 662
consensus_7098#0 ------------------------------------------------------------
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 AAGTTTGTACATCTTTTCGATAAATGCCGGTATTTTTGGTAGCACGGGNTAAAANAGACA 722
consensus_7098#0 ------------------------------------------------------------
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 CAATAGAAGANAGAAAAAAAACAGGTGCGNTTTGTTAGCCTGGGCCCGACAAAGCGCGTT 782
consensus_7098#0 ------------------------------------------------------------
consensus_7098#2 ------------------------------------------------------------
consensus_7098#1 ATAACCCCTTTTAGGTAGACGNGGGTTAGAATCTTATACAGCCTATGGGCAANATCGGNA 842
consensus_7098#0 ---------------------------------------------
consensus_7098#2 ---------------------------------------------
consensus_7098#1 CCGCTCGCGTATTAACAACCNGNTTCCTTGAACCTTGGGCAAAAA 887
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||