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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1047 fasta sequence
[CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGG-AAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTGACGCCATATCAGACATTCCGCTG-TTTTTTT-AAGTGTTTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGATCAGCTCGACCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGCTTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATGGACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAATCAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATGATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGTTCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAACGCTTGGTCG]
[+] EMBL BM609224 [CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGGAAAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTGACGCCATATCAGACATTCCGCTGTTTTTTTT AAGTGTTTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAGATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGAT ]
[+] EMBL BM610637 [CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGG AAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCATTCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTTACGCCATATCAGACATTCCGCTG TTTTTTT AAGTGATTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGC ]
[+] EMBL BM603296 [ ccgGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGG AAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTGACGCCATATCAGACATTCCGCTG TTTTTTTGAAGTGTTTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGATCAGCTCGACCGACATTAACCCGAGGGGC ]
[+] EMBL BM608286 [ ccgGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGATCAGCTCGACCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGCTTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATGGACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAATCAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATGATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGTTCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAACGCTTGGTCG]
[+] EMBL BM594411 [ ccgCCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGCTTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATGGACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAATCAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATGATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGTTCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAA ]
consensusID : consensus_7102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence
[NGCAGAATNGCCCCGAGGCTGTCTGTGGAGGCATCACATCAACAACCAATCGTACAGTTATATATAGTGAAATGACCCTGAACACTACCTGATCTTGCACTGCGTGCTACAGCACATGCAGTGATGTAAAGAGACAGATAGTGTGACTGCCATATCAGACATTCCTGCTGTTTTCTTTTGACACCGTGATTCTNTTGCGACGNGGTGTACTTGGATGCTTGCAAATGTGGCATGCCCTAAGATTAACTGAACAATTTGAACTGTGACACTGTGTGGCCTTTACACTTGTTTTTCNCCNACCCGTTTTTTACTTGTCTTGTCAACAACTTAACTCTCGGCTTCAACTTACCTGCTGTTGACATACGATGGTTGTTCTNTGTTGAAACCATGTCCCACTGAACTTGCGTGAACCAATGAATCCTTTACCTGTTGTTGCTATTGNGTATCTTCTGTGCTTGCGTTACAACCCAAACCTGGGAACCCCGTGGAGAAGGTTTTNCACCCCCACATAGTAGGGGGGTTTTATGGGGGGCGGGAAAAAACCCCCTTTNTGAAACACATCGGGTTTTTTTTTGTGGGGTGCTGCTGCCCCTGCACCCCCTATGNGGGGGCCGCCCCCCTTNGGGGGTCCGTGACCCCCCCCCTCTGTGGGNGAGAAAACGTTTTTTTCCCCTCTGAGGGGGANCGCGCGAAAGAGTAGCCCCGTTTTTTTTTTTCGGTGGGGTGCGCCCGCGTTTTTTTTCGTGGGGGGGTCGACACCCTCTTT]
[+] EMBL AL932004 [NGCAGAATNGCCCCGAGGCTGTCTGTGGAGGCATCACATCAACAACCAATCGTACAGTTATATATAGTGAAATGACCCTGAACACTACCTGATCTTGCACTGCGTGCTACAGCACATGCAGTGATGTAAAGAGACAGATAGTGTGACTGCCATATCAGACATTCCTGCTGTTTTCTTTTGACACCGTGATTCTNTTGCGACGNGGTGTACTTGGATGCTTGCAAATGTGGCATGCCCTAAGATTAACTGAACAATTTGAACTGTGACACTGTGTGGCCTTTACACTTGTTTTTCNCCNACCCGTTTTTTACTTGTCTTGTCAACAACTTAACTCTCGGCTTCAACTTACCTGCTGTTGACATACGATGGTTGTTCTNTGTTGAAACCATGTCCCACTGAACTTGCGTGAACCAATGAATCCTTTACCTGTTGTTGCTATTGNGTATCTTCTGTGCTTGCGTTACAACCCAAACCTGGGAACCCCGTGGAGAAGGTTTTNCACCCCCACATAGTAGGGGGGTTTTATGGGGGGCGGGAAAAAACCCCCTTTNTGAAACACATCGGGTTTTTTTTTGTGGGGTGCTGCTGCCCCTGCACCCCCTATGNGGGGGCCGCCCCCCTTNGGGGGTCCGTGACCCCCCCCCTCTGTGGGNGAGAAAACGTTTTTTTCCCCTCTGAGGGGGANCGCGCGAAAGAGTAGCCCCGTTTTTTTTTTTCGGTGGGGTGCGCCCGCGTTTTTTTTCGTGGGGGGGTCGACACCCTCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7102#0 CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAG 60
consensus_7102#1 ------------------------------------------------------------
consensus_7102#0 AAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGGAAAAAAACCGT 120
consensus_7102#1 ------------------------------------------------------------
consensus_7102#0 TTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGA 180
consensus_7102#1 -------------------------------------------------NGCAGAATNGC 11
* ** *
consensus_7102#0 TCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTG 240
consensus_7102#1 CCCGAGGCTGTCTGTGGAGGCA-TCACATCAAC-AACCAATCGTACAGTTATATATAGTG 69
* * *************** ********** **************************
consensus_7102#0 AAA-GACCCTGAACACTACC-GATCTTGCAC-GCG-GCTACAGCACATGCAG-GATGTAA 295
consensus_7102#1 AAATGACCCTGAACACTACCTGATCTTGCACTGCGTGCTACAGCACATGCAGTGATGTAA 129
*** **************** ********** *** **************** *******
consensus_7102#0 AGAGACAGATAG-GTGAC-GCCATATCAGACATTCC-GCTGTTTT--TTTAA----GTGT 346
consensus_7102#1 AGAGACAGATAGTGTGACTGCCATATCAGACATTCCTGCTGTTTTCTTTTGACACCGTGA 189
************ ***** ***************** ******** *** * ***
consensus_7102#0 TTTTG-------GAGGGGTACT-GGATGCT-GCAAAGG--GCA-GCCCTA-GATTAAGAA 393
consensus_7102#1 TTCTNTTGCGACGNGGTGTACTTGGATGCTTGCAAATGTGGCATGCCCTAAGATTAACTG 249
** * * ** ***** ******* ***** * *** ****** ******
consensus_7102#0 AATGAACGGAACGGGCTTAATGTTT--CCCACCTTTTTACTGCTGCACAACTACTCGCTC 451
consensus_7102#1 AACAATTTGAACTGTGACACTGTGTGGCCTTTACACTTGTTTTTCNCCNACCCGTTTTTT 309
** * **** * * *** * ** ** * * * ** * *
consensus_7102#0 AACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGAT--CTTACCGTGT 509
consensus_7102#1 ACTTGTCTTGTCAACAACTTAACTCTCGGCTTCAACTTACCTGCTGTTGACATACGATG- 368
* * ** ***** * * * * * * * * * *** **
consensus_7102#0 GCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTG--CCCGCCGCCC 567
consensus_7102#1 GTTGTTCTNTGTTGAAACCATGTCCCACTGAACTTGCGTGAACCAATGAATCCTTTACCT 428
* * * * * ** * **** * **** ** * ** ** **
consensus_7102#0 GATCGCACTGCTGCCGGAGCCGCCGGAA--GAGCTGGACGTGAGCTTTGTGATATTTAAT 625
consensus_7102#1 GTTGTTGCTATTGN-GTATCTTCTGTGCTTGCGTTACAACCCAAACCTGGGA-ACCCCGT 486
* * ** ** * * * * * * * * * * ** ** * *
consensus_7102#0 GGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCG 685
consensus_7102#1 GGAGAAGGTTTTNCACCCCCACA-TAGTAGGGGGGTTTTATGGGGGGCGGGAAAAAACCC 545
** * *** ** ** * * ** * * * * * **
consensus_7102#0 GACTCGATCAGCTCGACCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGC 745
consensus_7102#1 CCTTTNTGAAACACATCGGGTTTTTTTTTGTGGGGTG----CTGCTGC-CCCTGCACC-C 599
* * * * * * ** * **** ** ** * * **** *
consensus_7102#0 TTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATG 805
consensus_7102#1 CCTATGNGGGGGCCGCCCCCCTTNGGGGGTCCGTGACCCCCCCCCTCTGTGGGNGAGAAA 659
* ** * * * ** * ** * * * * ** ** *
consensus_7102#0 GACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAAT 865
consensus_7102#1 ACGTTTTTTTCCCCTCTGAGGGGGANCGCGCGAAAGAGTAGCCCCGTTTTTTTTTTTCGG 719
** * *** * * ** * * ** ** * *
consensus_7102#0 CAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATG 925
consensus_7102#1 TGGG-GTGCGCCCGCGTTTTTTTTCGTGGGGGGGTCGACACCCTCTTT------------ 766
** ****** * ** ** *** *** * ****
consensus_7102#0 ATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGT 985
consensus_7102#1 ------------------------------------------------------------
consensus_7102#0 TCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAACGCTTGGT 1045
consensus_7102#1 ------------------------------------------------------------
consensus_7102#0 CG 1047
consensus_7102#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||