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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1124 fasta sequence
[GAACGGTGTGGTGGTTGAGGCTGGTACGCACGACGAGCTGATGGCGAAGAGCCGAATCTACGCGAAGCTGTACCAGATGCAGCAGGTGGCGTAAATGTGTTGGCCCAGCTCGTCGTGAGCTGATGTTGTTCCTACTACGTAACTGTTGCACCGTACTTTTGATGACTGGCAGATACGCATCCTTCAAATGAACTAGGCTCATTTGCTTGCAGTTCGGTTGCATGTTGCTGCATCGTTTTGTTTTAGGGCATTGCAGTTGGAATTCTTGGATTGAACAAAAGCAAGCCAGCAGCAAAGGCCACAACGTGTAACGTACAAGACAAAATCAAAGACTTTACCAAACTAAGAGACACCGTGCCGTAGAGACATAGTTCGGAGTCGGAGAGAGCAAGAGATGTATGTTTCAGTACAGCTTTGCGGGGACCGATTCCGGCTATTGCCCACCGTTCTTTTTCGCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGTGGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGATTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGCAAAAACAATGCCAAACCACCACCCCGAG-AAGACGGGAAATTGATGCGCACCAACGACGCACACGACGCAGGGGCGCAATCGGGAGCGCGTGGCACGGTGCGAATGTTGCACGCGGCTGGTGAATGAATCGGTTTTCGCCAGGGACCGCACCCCACCAGTAGCGATTGCCGGTTGTGGTGCAATA-TTGCCTCCAAAAA-TTTGTAGAAATAGATAAGCAAGGTCGAACGCGCGCAGTATAAGCAGTAGCTTCGTTTTTTTCCCTAGCCTAACCACTAGTTAGCAACCGTGTAGGT-AACAAATCTCAGCTTCATCAAAACACGGAAACACGCACAGGAACGAATCAATCATGGTGTGGTGGGTGGGGGTGATTGTTAGCCAAACTGAAGTGCATAGTGATTGCAAATTATTTATATCTCGCGCGTGTGTGTGGTGTGTGAAACTGTGTGTGTGGCTG-ATGAAATATACACGTGATTGTGTGTGTGTTTGACAAGGTATGAC]
[+] EMBL BX604538 [GAACGGTGTGGTGGTTGAGGCTGGTACGCACGACGAGCTGATGGCGAAGAGCCGAATCTACGCGAAGCTGTACCAGATGCAGCAGGTGGCGTAAATGTGTTGGCCCAGCTCGTCGTGAGCTGATGTTGTTCCTACTACGTAACTGTTGCACCGTACTTTTGATGACTGGCAGATACGCATCCTTCAAATGAACTAGGCTCATTTGCTTGCAGTTCGGTTGCATGTTGCTGCATCGTTTTGTTTTAGGGCATTGCAGTTGGAATTCTTGGATTGAACAAAAGCAAGCCAGCAGCAAAGGCCACAACGTGTAACGTACAAGACAAAATCAAAGACTTTACCAAACTAAGAGACACCGTGCCGTAGAGACATAGTTCGGAGTCGGAGAGAGCAAGAGATGTATGTTTCAGTACAGCTTTGCGGGGACCGATTCCGGCTATTGCCCACCGTTCTTTTTCGCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGTGGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGATTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGC AAAACAATGCCAAACCACCACCCCGAGAAAGACGGGAAATTGATGCGCACCAACG ]
[+] EMBL BX627679 [ CTGATGTTGTTCCTACTACGTAACTGTTGCACCGTACTTTTGATGACTGGCAGATACGCATCCTTCAAATGAACTAGGCTCATTTGCTTGCAGTTCGGTTGCATGTTGCTGCATCGTTTTGTTTTAGGGCATTGCAGTTGGAATTCTTGGATTGAACAAAAGCAAGCCAGCAGCAAAGGCCACAACGTGTAACGTACAAGACAAAATCAAAGACTTTACCAAACTAAGAGACACCGTGCCGTAGAGACATAGTTCGGAGTCGGAGAGAGCAAGAGATGTATGTTTCAGTACAGCTTTGCGGGGACCGATTCCGGCTATTGCCCACCGTTCTTTTTCGCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGTGGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGATTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGCAAAAACAATGCCAAACCACCACCCCGAG AAGACGGGAAATTGATGCGCACCAACGACGCACACGACGCAGGGGCGCAATCGGGAGCGCGTGGCACGGTGCGAATGTTGCACGCGGCTGGTGAATGAATCGGTTTTCGCCAGGGACCGCACCCCACCAGTAGCGATTGCCGGTTGTGGTGCAATA TTGCCTCCAAAAA TTTGTAGAAATAGATAAGCAAGGTCGAACGCGCGCAGTATAAGCAGTAGCTTCGTTTTTTTCCCTAGCCTAACCACTAGTTAGCAACCGTGTAGGT AACNAATCTCAGCTT ]
[+] EMBL BM612501 [ ccgCCGATTCCGGCTATTGCCCACCGTTCTTTTTCGCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGTGGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGATTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGCAAAAACAATGCCAAACCACCACCCCGAG AAGACGGGAAATTGATGCGCACCAACGACGCACACGACGCAGGGGCGCAATCGGGAGCGCGTGGCACGGTGCGAATGTTGCACGCGGCTGGTGAATGAATCGGTTTTCGCCAGGGACCGCACCCCACCAGTAGCGATTGCCGGTTGTGGTGCAATA TTGCCTCCAAAAA TTTGTAGAAATAGATAAGCAAGGTCGAACGCGCGCAGTATAAGCAGTAGCTTCGTTTTTTTCCCTAGCCTAACCACTAGTTAGCAACCGTGTAGGTAAACAAATCTCAGCTTCATCAAAACACGGAAACACGCACAGGAACGAATCAATCATGGTGTGGTGGGTGGGGGTGATTGTTAGCCAAACTGAAGTGCATAGTGATTGCAAATTATTTATATCTCGCGCGTGTGTGTGGTGTGTGAAACTGTGTGTGTGGCTG ATGAAATA ]
[+] EMBL AL932031 [ aattgccCCGAGGTTT AGTGTGTGTGTGCGTGCTTGTGGAGATNGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGATTGTAA CTCTTAGTGATAACGATATACCTTTATGCTAGAAGCAAGCGAGCAAAAACAATGGCAAA CA CA CCCGAG AAGACGGGAAATTGATGCGCACCAACGACGCACACGACGCA GGGCGCAATCGGGAGCGCGTGGCACGGTGCGAATGTTGCACGCGGCTGGTGAATGAATCGGTTTTCGCCAGGGACCG ACCCCACCAGTAGCGATTG CGGTTGTGGTGCAATATTTGCCTCCAAAAATTTTGTAGAAATAGATAAGCAAGGTCGAACGCGCGCAGTATAAGCAGTAGCTTCGTTTTTTTCCCTAGCCTAACCACTAGTTAGCAACCGTGTAGGTAAACAAATCTCAGCTTCATCAAAACACGGAAACACGCACAGGAACGAATCAATCATGGTGTGGT GGT GGGTGATTGTTAG CAAACTGAAGTGCATAGTGATTGCCAATTATTTATATCTCGCGCGTGTGTGT GTGTGTG ANTGTGTGTGTGGCTGAATGAAACATACACGTGATTGTGTGTGTGTTTGACAAGGTATGAC]
consensusID : consensus_7103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[CCTCGGCACTGGACAATCAGAGCGAAAAGATCGTGCAGAATGCGTTGGATCATGCGCGGACGGGACGAACGTGCATCATCATCGCCCACCGACTGACGACGATCCAGAACGCGAATCTGATCTGCGTCATCCAGAACGGTGTGGTGGTTGAGGCTGGTACGCACGACGAGCTGATGGCGAAGAGCCGAATCTACGCGAAGCTGTACCAGATGCAGCAGGTGGCGTAAATGTGTTGGCCCAGCTCGTCGTGAGCTGATGTTGTTCCTACTACGTAACTGTTGCACCGTACTTTTGATGACTGGCAGATACGCATCCTTCAAATGAACTAGGCTCATTTGCTTGCAGTTCGGTTGCATGTTGCTGCATCGTTTTGTTTTAGGGCATTGCAGTTGGAATTCTTGGATTGAACAAAAGCAAGCCAGCAGCAAAGGCCACAACGTGTAACGTACAAGACAAAATCAAAGACTTTACCAAACTAAGAGACACCGTTCTTTTTCGCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGTGGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGATTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGCAAAAACAATGCCAAACCACCACCCCGAGAAGACGGGAAATT]
[+] EMBL BX608610 [CCTCGGCACTGGACAATCAGAGCGAAAAGATCGTGCAGAATGCGTTGGATCATGCGCGGACGGGACGAACGTGCATCATCATCGCCCACCGACTGACGACGATCCAGAACGCGAATCTGATCTGCGTCATCCAGAACGGTGTGGTGGTTGAGGCTGGTACGCACGACGAGCTGATGGCGAAGAGCCGAATCTACGCGAAGCTGTACCAGATGCAGCAGGTGGCGTAAATGTGTTGGCCCAGCTCGTCGTGAGCTGATGTTGTTCCTACTACGTAACTGTTGCACCGTACTTTTGATGACTGGCAGATACGCATCCTTCAAATGAACTAGGCTCATTTGCTTGCAGTTCGGTTGCATGTTGCTGCATCGTTTTGTTTTAGGGCATTGCAGTTGGAATTCTTGGATTGAACAAAAGCAAGCCAGCAGCAAAGGCCACAACGTGTAACGTACAAGACAAAATCAAAGACTTTACCAAACTAAGAGACACCGTTCTTTTTCGCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGTGGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGATTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGCAAAAACAATGCCAAACCACCACCCCGAGAAGACGGGAAATT]
consensusID : consensus_7103#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[TGCAGAATCGCACGAGGTGCAGTGCTTGTGGACGATGGGTTTCTCACGCGGGAACACAACATACGTGATAATCGAAGCGCCTTCCGGTAATTGTAACCTCTTAGTGATAACGATATACCTTTANGCTAAAAGCAAGCGAGCAAAAACAATGCCAAANCACACACGCCCGAGAAGACGGGAAAGTTGATGCGCACCAAACGGACGGCACACAGACGCAGGGGCGCAATCTGCGGAGACGCTGTGGCACAGGGTGNCGAAATGTTTGCACAGCAGGGCGTTGGGTGAATGAAATCGGTTTTACGCGCAAGTGGACCCGGGAAGCCGGCGCGAAGCGAAGGGTTCAGGGCNGAACTTTGGGCACCGGGGGTTTGGGTTGGGATTGCCACAAGTAANTTTTTGGCGGCGTTTCGTCGCNAAACAAAGTTTGTTGGTTAAGGAAAACACGTAGGAAGTTATAGGTGCGCAANGTGGTNCCGGACAACANGCGGCCNGGGCNATGGTTATAAAGTGCNCAGGACTTAAAGANCATCATCCGGAGAGNATGTGATGTNTGCCCACCTTTANGNGAC]
[+] EMBL BX469541 [TGCAGAATCGCACGAGGTGCAGTGCTTGTGGACGATGGGTTTCTCACGCGGGAACACAACATACGTGATAATCGAAGCGCCTTCCGGTAATTGTAACCTCTTAGTGATAACGATATACCTTTANGCTAAAAGCAAGCGAGCAAAAACAATGCCAAANCACACACGCCCGAGAAGACGGGAAAGTTGATGCGCACCAAACGGACGGCACACAGACGCAGGGGCGCAATCTGCGGAGACGCTGTGGCACAGGGTGNCGAAATGTTTGCACAGCAGGGCGTTGGGTGAATGAAATCGGTTTTACGCGCAAGTGGACCCGGGAAGCCGGCGCGAAGCGAAGGGTTCAGGGCNGAACTTTGGGCACCGGGGGTTTGGGTTGGGATTGCCACAAGTAANTTTTTGGCGGCGTTTCGTCGCNAAACAAAGTTTGTTGGTTAAGGAAAACACGTAGGAAGTTATAGGTGCGCAANGTGGTNCCGGACAACANGCGGCCNGGGCNATGGTTATAAAGTGCNCAGGACTTAAAGANCATCATCCGGAGAGNATGTGATGTNTGCCCACCTTTANGNGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7103#0 ------------------------------------------------------------
consensus_7103#1 CCTCGGCACTGGACAATCAGAGCGAAAAGATCGTGCAGAATGCGTTGGATCATGCGCGGA 60
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 ------------------------------------------------------------
consensus_7103#1 CGGGACGAACGTGCATCATCATCGCCCACCGACTGACGACGATCCAGAACGCGAATCTGA 120
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 -------------GAACGGTGTGGTGGTTGAGGCTGGTACGCACGACGAGCTGATGGCG- 46
consensus_7103#1 TCTGCGTCATCCAGAACGGTGTGGTGGTTGAGGCTGGTACGCACGACGAGCTGATGGCG- 179
consensus_7103#2 ---------TGCAGAATCGCACGAGGTGCAGTGCT--TGTGGACGATGGGTTTCTCACGC 49
*** * * * *** * * **** * * * * **
consensus_7103#0 AAGAGCCGAATCTACGCGA-AGCTGTACCAGATGC-AGCAG--GTGGCGTAAATGTGTTG 102
consensus_7103#1 AAGAGCCGAATCTACGCGA-AGCTGTACCAGATGC-AGCAG--GTGGCGTAAATGTGTTG 235
consensus_7103#2 GGGAACACAACATACGTGATAATCGAAGCGCCTTCCGGTAATTGTAACCTCTTAGTGATA 109
** * ** **** ** * * * * * * * * ** * * *** *
consensus_7103#0 GCCCAGCTCGTCGTGAGCTGATGTTGTTCCTACTACGTAACTGTTGCACCGTACTTTT-- 160
consensus_7103#1 GCCCAGCTCGTCGTGAGCTGATGTTGTTCCTACTACGTAACTGTTGCACCGTACTTTT-- 293
consensus_7103#2 ACGATATACCTT-TANGCTAAAAGCAAGCGAGCAAAAACAATGCCAAANCACACACGCCC 168
* * * * *** * * * * * ** * * **
consensus_7103#0 --GATGACTGGCAGATACGCATCCTTCAAATGAACTAGGCTCATTTGCTTGCAGTTCGGT 218
consensus_7103#1 --GATGACTGGCAGATACGCATCCTTCAAATGAACTAGGCTCATTTGCTTGCAGTTCGGT 351
consensus_7103#2 GAGAAGACGGGAAAGTTGATGCGCACCAAACGGACGGCACACAGACGCAGGGGCGCAATC 228
** *** ** * * * **** * ** * ** ** *
consensus_7103#0 TGCAT-GTTGCTGCATCGTTTTGTTTTAGGGCATTGCAGTTGGAATTCTTGGATTGAACA 277
consensus_7103#1 TGCAT-GTTGCTGCATCGTTTTGTTTTAGGGCATTGCAGTTGGAATTCTTGGATTGAACA 410
consensus_7103#2 TGCGGAGACGCTGTGGCACAGGGTGNCGAAATGTTTGCACAGCAGGGCGTTGGGTGAATG 288
*** * **** * ** ** * * * * * ****
consensus_7103#0 AAAGCAAGCCAGCAGCAAAGGCCACAACGTGTAACGTACAAGACAAAATCAAAGACTTTA 337
consensus_7103#1 AAAGCAAGCCAGCAGCAAAGGCCACAACGTGTAACGTACAAGACAAAATCAAAGACTTTA 470
consensus_7103#2 AAATCGGTTTTAC-GCGCAAGTGGACCCGGGAAGC---CGGCGCGAAGCGAAGGGTTCAG 344
*** * * ** * * ** * * * * * ** ** * *
consensus_7103#0 --CCAAACTAAGAGACACCGTGCCGTAGAGACATAGTTCGGAGTCGGAGAGAGCAAGAGA 395
consensus_7103#1 --CCAAACTAAGAGACACCGT--------------------------------------- 489
consensus_7103#2 GGCNGAACTTTGGG-CACCGG--------------------------------------- 364
* **** * * *****
consensus_7103#0 TGTATGTTTCAGTACAGCTTTGCGGGGACCGATTCCGGCTATTGCCCACCGTTCTTTTTC 455
consensus_7103#1 ----------------------------------------------------TCTTTTTC 497
consensus_7103#2 ------------------------------------------------------GGGTTT 370
**
consensus_7103#0 GCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGT 515
consensus_7103#1 GCATCGCCATCGCATCATCGCCCTTTTTGCCGACCTTTAAGTGTGTGTGTGCGTGCTTGT 557
consensus_7103#2 GGGTTGGGATTGCCACAAGTAANTTTTTGGCGGCGTTTCGTCGCNAAACAAAGT--TTGT 428
* * * ** ** ** ****** ** * *** * ** ****
consensus_7103#0 GGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGA 575
consensus_7103#1 GGAGATGGGTTTCTCACGCGGGAACACCAACATACGTGATAATCGAAGCGCCTCCGTAGA 617
consensus_7103#2 TG-GTTAAGGAAAACACGTAGGAA----GTTATAGGTGCGCAANGTGGTNCCGGACAACA 483
* * * * **** **** *** *** * * * ** * *
consensus_7103#0 TTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGCAAAAACAAT 635
consensus_7103#1 TTGTAACCTCTTAGTGATAACGATATACCTTTAGGCTAGAAGCAAGCGAGCAAAAACAAT 677
consensus_7103#2 NGCGGCCNGGGCNATGGTTATAAAGTGCNCAGGACTTAAAGANCATCATCCGGAGAGNAT 543
* ** * * * * * ** * * * * * * **
consensus_7103#0 GCCAAACCA--CCACCCCGAGAAGACGGGAAATTGATGCGCACCAACGACGCACACGACG 693
consensus_7103#1 GCCAAACCA--CCACCCCGAGAAGACGGGAAATT-------------------------- 709
consensus_7103#2 GTGATGTNTGCCCACCTTTANGNGAC---------------------------------- 569
* * ***** * ***
consensus_7103#0 CAGGGGCGCAATCGGGAGCGCGTGGCACGGTGCGAATGTTGCACGCGGCTGGTGAATGAA 753
consensus_7103#1 ------------------------------------------------------------
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 TCGGTTTTCGCCAGGGACCGCACCCCACCAGTAGCGATTGCCGGTTGTGGTGCAATATTG 813
consensus_7103#1 ------------------------------------------------------------
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 CCTCCAAAAATTTGTAGAAATAGATAAGCAAGGTCGAACGCGCGCAGTATAAGCAGTAGC 873
consensus_7103#1 ------------------------------------------------------------
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 TTCGTTTTTTTCCCTAGCCTAACCACTAGTTAGCAACCGTGTAGGTAACAAATCTCAGCT 933
consensus_7103#1 ------------------------------------------------------------
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 TCATCAAAACACGGAAACACGCACAGGAACGAATCAATCATGGTGTGGTGGGTGGGGGTG 993
consensus_7103#1 ------------------------------------------------------------
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 ATTGTTAGCCAAACTGAAGTGCATAGTGATTGCAAATTATTTATATCTCGCGCGTGTGTG 1053
consensus_7103#1 ------------------------------------------------------------
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 TGGTGTGTGAAACTGTGTGTGTGGCTGATGAAATATACACGTGATTGTGTGTGTGTTTGA 1113
consensus_7103#1 ------------------------------------------------------------
consensus_7103#2 ------------------------------------------------------------
consensus_7103#0 CAAGGTATGAC 1124
consensus_7103#1 -----------
consensus_7103#2 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||