cluster # 7111

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Anopheles gambiae
cluster # 7111 cluster # 7111 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7111#0 length = 883 sequences # 5

consensus_7111#1 length = 356 sequences # 1

consensusID : consensus_7111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 883
fasta sequence

                              [CCGCGATAGCGCCATCGTCAATGGTGCGGAGGATGACGATGACGACGACGACGAGGAGGATGATGATGACAGCGACGACGACGAAGACGTCGAGGATGAGGAGGAAGATGATGATGACGATGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAAGCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCATGCGTACCCTCCAGGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCAATGGGCCGGAGGCGAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGTGTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTCGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCC-GCCGG-TCATCCCGCCCTGCAG-TACGCTCGTGTTTGAGGTC-GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC-TACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAACAAAAAAGGGGGCCCCCTCTAGCGGATCCCCGCCTTTGTTACGCGTGGATTGCGACGGTTATAGCCTCCTTCTATAAGTCGCCCTTTAAATTTTAATTTTAGTGGCCCGGGCTTTTTTACAACCCTCTCTGAATT]

[+] EMBL BM599981             [CCGCGATAGCGCCATCGTCAATGGTGCGGAGGATGACGATGACGACGACGACGAGGAGGATGATGATGACAGCGACGACGACGAAGACGTCGAGGATGAGGAGGAAGATGATGATGACGATGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAAGCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCATGCGTACCCTCCAGGACGGGCTAATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM634086             [                                                                                              ccgGAGGAGGAAGATGATGATGACGATGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAAGCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCATGCGTACCCTCCAGGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCAATGGGCCGGAGGCGAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGTGTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTCGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCC GCCGG TCATCCCGCCCTGCAG TACGCTCGTGTTTGAGGTC GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC TACTAAAAATAAACACTTATCCTTGAGTACAATGT                                                                                                                                                 ]
[+] EMBL BM617931             [                                                                                                                                             ccgCGACGATGAGGAGGACGAGGAATACGAATATGTCATGCAGCCTAAAGACAAGCACGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACACCAAGGCCGTTAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAATAAAGGTGGCATGCGTACCCTCCATGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCTATGGGCCGGAGGCGAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGTGTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCCCGCTCGGTCGCGGCGAAATGGCCAAGGGCTGAGATTTGGGCGTCCCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGTACGAAGGGTAGCCCTTCCGGTTCATCCCGCCCTGCAGTTACGCTCGCGTTTGAGGTCTCAGCTGAAAAAGGTGTTCTAATGTGGTTAGAGAGAGCGCGTACGTTGCGGGTGTTTACCTTTATCAGGGAACTTTATATTACCTTACATACTACAAATAAACCCTTATCCTTGAGTACCATGCCAAACAAAAACAAAAAAGGGGGCCCCCTCTAGCGGATCCCCGCCTTTGTTACGCGTGGATTGCGACGGTTATAGCCTCCTTCTATAAGTCGCCCTTTAAATTTTAATTTTAGTGGCCCGGGCTTTTTTACAACCCTCTCTGAATT]
[+] EMBL AGA282047            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATCCCGCCCTGCAG TACGCTCGTGTTTGAGGTC GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC TACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAAAAAAAA                                                                                                                                 ]
[-] EMBL AGA280348            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      G TACGCTCGTGTTTGAGGTC GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC TACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAA                                                                                                                                         ]




>consensus_7111#0
CCGCGATAGCGCCATCGTCAATGGTGCGGAGGATGACGATGACGACGACGACGAGGAGGA
TGATGATGACAGCGACGACGACGAAGACGTCGAGGATGAGGAGGAAGATGATGATGACGA
TGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAA
GCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAA
CGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCAT
GCGTACCCTCCAGGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCAATGGGCCGGAGGC
GAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGT
GTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGT
CAAGGGCTGGGATTTGGGCGTCGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCAT
CCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTAC
GCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACG
TTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTACTACTAAAAATAAACACT
TATCCTTGAGTACAATGTAAAAAAAAAACAAAAAAGGGGGCCCCCTCTAGCGGATCCCCG
CCTTTGTTACGCGTGGATTGCGACGGTTATAGCCTCCTTCTATAAGTCGCCCTTTAAATT
TTAATTTTAGTGGCCCGGGCTTTTTTACAACCCTCTCTGAATT

consensusID : consensus_7111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [TTCGACCGCGGCGCTCCTTCTTCTCCTTGTACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTNGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTACGCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAGNNNNNNNNNATATTACATTACTACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAAAAA]

[-] EMBL AGA281279            [TTCGACCGCGGCGCTCCTTCTTCTCCTTGTACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTNGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTACGCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAGNNNNNNNNNATATTACATTACTACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAAAAA]




>consensus_7111#1
TTCGACCGCGGCGCTCCTTCTTCTCCTTGTACAGCACCAACAAGGGCCCGGGCCTGAAGT
TCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTNGCCGGCATGAAGG
TGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCC
CGCCGGTCATCCCGCCCTGCAGTACGCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCT
AAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAGNNNNNNNNNATAT
TACATTACTACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7111#0      CCGCGATAGCGCCATCGTCAATGGTGCGGAGGATGACGATGACGACGACGACGAGGAGGA 60
consensus_7111#1      ------------------------------------------------------------
                                                                                  

consensus_7111#0      TGATGATGACAGCGACGACGACGAAGACGTCGAGGATGAGGAGGAAGATGATGATGACGA 120
consensus_7111#1      ------------------------------------------------------------
                                                                                  

consensus_7111#0      TGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAA 180
consensus_7111#1      ------------------------------------------------------------
                                                                                  

consensus_7111#0      GCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAA 240
consensus_7111#1      ------------------------------------------------------------
                                                                                  

consensus_7111#0      CGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCAT 300
consensus_7111#1      ------------------------------------------------------------
                                                                                  

consensus_7111#0      GCGTACCCTCCAGGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCAATGGGCCGGAGGC 360
consensus_7111#1      ------------------------------------------------------------
                                                                                  

consensus_7111#0      GAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGT 420
consensus_7111#1      -----------------------------------TTCGACCGCGGCGCTCCTTCTTCTC 25
                                                          *** * *  *     *  *     

consensus_7111#0      GTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGT 480
consensus_7111#1      CTTGTACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGT 85
                       **  *******************************************************

consensus_7111#0      CAAGGGCTGGGATTTGGGCGTCGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCAT 540
consensus_7111#1      CAAGGGCTGGGATTTGGGCGTNGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCAT 145
                      ********************* **************************************

consensus_7111#0      CCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTAC 600
consensus_7111#1      CCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTAC 205
                      ************************************************************

consensus_7111#0      GCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACG 660
consensus_7111#1      GCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACG 265
                      ************************************************************

consensus_7111#0      TTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTACTACTAAAAATAAACACT 720
consensus_7111#1      TTGCGGGTGTTTACATTTATAGNNNNNNNNNATATTACATTACTACTAAAAATAAACACT 325
                      *********************          *****************************

consensus_7111#0      TATCCTTGAGTACAATGTAAAAAAAAAACAAAAAAGGGGGCCCCCTCTAGCGGATCCCCG 780
consensus_7111#1      TATCCTTGAGTACAATGTAAAAAAAAAAAAA----------------------------- 356
                      **************************** **                             

consensus_7111#0      CCTTTGTTACGCGTGGATTGCGACGGTTATAGCCTCCTTCTATAAGTCGCCCTTTAAATT 840
consensus_7111#1      ------------------------------------------------------------
                                                                                  

consensus_7111#0      TTAATTTTAGTGGCCCGGGCTTTTTTACAACCCTCTCTGAATT 883
consensus_7111#1      -------------------------------------------