|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence
[TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATATGAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGANAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTTGGAAGTTACAAATAAGCAAATAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATACATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGACATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATAATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGATGATAATAATAATTAA]
[+] EMBL BX624660 [TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTCCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGCGCTTCCTCTCCCCTTCCTCCCTTCTACTTTCATAGGGCGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATATGAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACAAGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACTCGCGCGCGCGCGCGCACGANAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTT ]
[+] EMBL BX614098 [ AGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTA TGTGTGTGTGTGTGTATATATGGGGGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCA CGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGAT ]
[+] EMBL BX613212 [ TCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTA TGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCA CGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAAAAATGCTTAACATATGCATATGAAAAAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGC ]
[+] EMBL BX614097 [ cCGCTATTGTTCTTATTATATATTACAATCGCGTTCTTTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGGGCATTGCGCGAATGCGCGCGTGTTACCCGGCGGGATTGGGTCTGTATGTGTGTGTG G GTGTATATATGGGGGTGTTTAAGGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAAGGTTTTAAAGCGGCAGGGGATTTCCTTTCTGCTGCACGCGCG G GCGCGCACTTCCTCTACCCTTCCTC ]
[-] EMBL AGA280325 [ TATAAGACACGACCTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGAGAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTAACAATTTGTATGGTTGTGCTGTATAAAATACCACTTGGAAGTTACAAATAAGCAAATAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATACATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGACATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATAATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGATGATAATAATAATTAA]
consensusID : consensus_7114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTCGCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGATCGTTCTATGCTTTACGATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTACGTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATCAATGCGTTTCCCTTCGTTATGCTGCTTTGATAGCAAAAAGAACGATGCTGTTGCACGCGG]
[-] EMBL BM587364 [CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTCGCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGATCGTTCTATGCTTTACGATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTACGTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATCAATGCGTTTCCCTTCGTTATGCTGCTTTGATAGCAAAAAGAACGATGCTGTTGCACGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7114#0 TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCA 60
consensus_7114#1 -----------------CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCA 43
*******************************************
consensus_7114#0 TTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCG 120
consensus_7114#1 TTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCG 103
************************************************************
consensus_7114#0 TTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCG 180
consensus_7114#1 TTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCG 163
**************** *******************************************
consensus_7114#0 CGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTAT- 239
consensus_7114#1 CGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTC 223
** ************************************************* ** * *
consensus_7114#0 ---ATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCC 296
consensus_7114#1 GCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGA---TCGTTCTATGCTTTAC 280
*** * * ** ** *** * ** *** ** **** *
consensus_7114#0 TCTCTTAATGTTTTAAAGCGTCA-TGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGC 355
consensus_7114#1 GATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTAC 340
* * * ** ** * * ******* * * ** *
consensus_7114#0 ACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGG 415
consensus_7114#1 GTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATC 400
* * *** ** * * * ** ** ** * ** * *
consensus_7114#0 CACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCA 475
consensus_7114#1 AATGCGTTTCCCTTC--GTTATGCTGCTT--TGATAGCAAAAAGA-ACGATGCTGTTGCA 455
* * ***** * * ** * * * * * * * * ** **** **
consensus_7114#0 TGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATAT 535
consensus_7114#1 CGCGG------------------------------------------------------- 460
**
consensus_7114#0 GAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGAC 595
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 ACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGA 655
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 NAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTT 715
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 TGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTTGGAAGTTACAAATAAGCAAA 775
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 TAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATA 835
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 CATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGAC 895
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 ATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATA 955
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 ATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGAT 1015
consensus_7114#1 ------------------------------------------------------------
consensus_7114#0 GATAATAATAATTAA 1030
consensus_7114#1 ---------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||