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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1205 fasta sequence
[CCGCTATCCTGTACTTTATTTTGTGAAATTTAATTATTTGTATTCACATCTTCTAGCCCACTCCTATTTAGGGGGATGAAGAGTCTCATTGAACTCATCGCTTGAACTCTCTAGACATTATCGTTAGCAGAACTACTGTAAAGAAAACGAACCTAGAATCTAACGAACTTCACCATCACAGCAAACAAAAAAAAAAAAAAGATTAATCAGACGTTCCTTTTAGGTCAGGGCAAGCTGATCTACTAAAGCTGTTGTAAAACTGTGCCAAGATGGGTGATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAANGGCATGAGANCATGTTTTGTAAATAATTTAAACAAAAATCCGATAAATAATCCAATCCTCC]
[+] EMBL BM647807 [CCGCTATCCTGTACTTTATTTTGTGAAATTTAATTATTTGTATTCACATCTTCTAGCCCACTCCTATTTAGGGGGATGAAGAGTCTCATTGAACTCATCGCTTGAACTCTCTAGACATTATCGTTAGCAGAACTACTGTAAAGAAAACGAACCTAGAATCTAACGAACTTCACCATCACAGCAAACAAAAAAAAAAAAAAGATTAATCAGACGTTCCTTTTAGGTCAGGGCAAGCTGATCTACTAAAGCTGTTGTAAAACTGTGCCAAGATGGGTGATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAA GGGCGCTAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTAT ]
[+] EMBL BX623910 [ AGGTAGCGCGGTGTAGTGATCGGATTGGAGTTACAGTGGAGTCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAANGGCATGAGANCATGTTTTGTAAATAATTTAAACAAAAATCCGATAAATAATCCAATCCTCC]
[+] EMBL BX610542 [ AAACCCAAGCGACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAG AAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAAGGGCATGAGACCATGTTTTGTAAAT ]
[+] EMBL BX610543 [ ACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTA ]
consensusID : consensus_7115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[GATCCCCCGAGGTTNAAACTGTGCCAAGATGGGTNATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAAGGCGCTAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCAACAGCAAACTTGATTTTCTGCGTGGACCAACCGCATGCTAGTAGCGCACGAAATGGGCTGTAATGTTGGGGAAGGGTANCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTTACTCATCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTGTGAACTAGAAGTTATAGAACCTTTTAGGAATTTGAG]
[+] EMBL AL932571 [GATCCCCCGAGGTTNAAACTGTGCCAAGATGGGTNATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAAGGCGCTAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCAACAGCAAACTTGATTTTCTGCGTGGACCAACCGCATGCTAGTAGCGCACGAAATGGGCTGTAATGTTGGGGAAGGGTANCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTTACTCATCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTGTGAACTAGAAGTTATAGAACCTTTTAGGAATTTGAG]
consensusID : consensus_7115#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[GACCCACGCGTCCGCCCACGCGTCCGGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAAGGGCATGAGACCATGTTTTGTAAATAATTTAAAACAAAAATCCGATAAAATAATCCAATCCTCCCCTCCCTCTCCATACCGTGATTAGAAACAAATATACAACGTTAGACGCAAATCAAACAAAACGCAAAAGGGGGAGCAACACGCAGATCAGATGAAATACACTATTTTACTTTTTGTTATTTACGAAGTAGTGGAATTATTAAGTGCAGAACAGCGAGTTAAAATAAA]
[+] EMBL BM655212 [GACCCACGCGTCCGCCCACGCGTCCGGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAAGGGCATGAGACCATGTTTTGTAAATAATTTAAAACAAAAATCCGATAAAATAATCCAATCCTCCCCTCCCTCTCCATACCGTGATTAGAAACAAATATACAACGTTAGACGCAAATCAAACAAAACGCAAAAGGGGGAGCAACACGCAGATCAGATGAAATACACTATTTTACTTTTTGTTATTTACGAAGTAGTGGAATTATTAAGTGCAGAACAGCGAGTTAAAATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7115#0 CCGCTATCCTGTACTTTATTTTGTGAAATTTAATTATTTGTATTCACATCTTCTAGCCCA 60
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 CTCCTATTTAGGGGGATGAAGAGTCTCATTGAACTCATCGCTTGAACTCTCTAGACATTA 120
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 TCGTTAGCAGAACTACTGTAAAGAAAACGAACCTAGAATCTAACGAACTTCACCATCACA 180
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 GCAAACAAAAAAAAAAAAAAGATTAATCAGACGTTCCTTTTAGGTCAGGGCAAGCTGATC 240
consensus_7115#1 --------------------------------------------------------GATC 4
consensus_7115#2 ------------------------------------------------GACCCACGCGTC 12
**
consensus_7115#0 TACTAAAGCTGTTGTAAAACTGTGCCAAGATGGGTGATTGGGAAATGGGCAAAAGGAGAA 300
consensus_7115#1 CCCCGAGGTTN-----AAACTGTGCCAAGATGGGTNATTGGGAAATGGGCAAAAGGAGAA 59
consensus_7115#2 CGCCCACGCGTCCGGTGAACTAGAAGTTAAAGAACCTTTTAGGAAT---TTGAGGGCAAA 69
* * * **** * * ** * *** * ** **
consensus_7115#0 CTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGA--GA 358
consensus_7115#1 CTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGA--GA 117
consensus_7115#2 ATTTATACATTCATTGCATTGAGAT-AGTTGATTAAGACAA-GCGCGCGGGACCGTTCAG 127
**** * ***** * * * * ** ** ** * * ** ** *
consensus_7115#0 GTGTAACAGTAGCAAA-GCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAG 417
consensus_7115#1 GTGTAACAGTAGCAAA-GCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAG 176
consensus_7115#2 ATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCA 187
* *** * * ******** *** * **** * ** * *
consensus_7115#0 CACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAG 477
consensus_7115#1 CACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAG 236
consensus_7115#2 CAAGACAACAGAAGAACTA---CCGCAGACGGGACACGCA-TACACAAACCTAATGAGAA 243
** ** * *** * ** ** ** ** * * * * ** **
consensus_7115#0 TTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAA 537
consensus_7115#1 TTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAA 296
consensus_7115#2 -------AGAGTGCTAGTGATTACCT----TTAGAAGA--AGAAGAAA---AACCGATAG 287
** * *** * * ** * *** * ****** ** *** *
consensus_7115#0 ACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGA 597
consensus_7115#1 AGGCGC--TAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGA 354
consensus_7115#2 AGAACCCGTAAGATTCGGAAC--ATTA-ATGTCGACTCCTGCCTTTC--------GAAGG 336
* * ** * * * **** ** **** *** * ** ****
consensus_7115#0 GAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGC 657
consensus_7115#1 GAAAGAGAGCAATCTTTCTTTTTTT--ATTTACTAAACGATCAAAAGCATGATCGTGAGC 412
consensus_7115#2 GCATGAGACCA-----TGTTTTGTA--AATAATTTAA--AACAAAAATCCGATAAAATAA 387
* * **** ** * **** * * * * * ** * ***** ***
consensus_7115#0 ATCAGTAAACTTGATTTT-TGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGC 716
consensus_7115#1 AACAGCAAACTTGATTTTCTGCGTGGACCAACCGCATGCTAGTAGCGCACGAA-ATGGGC 471
consensus_7115#2 TCCAATCCTCCCCTCCCTCTCCATACCGTGATTAGAAACAAATA---TACAAC-GTTAGA 443
** * * * * * * * * * ** ** * *
consensus_7115#0 TGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGG 776
consensus_7115#1 TGTAATGTTGGGGAAGGGTANCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGG 531
consensus_7115#2 CGCAAATCAAACAAAACGCAAAAGGGGGAGC-AACACGCA--GATCAGATGAAATACACT 500
* ** ** * * * * * *** *** ** * * *** *
consensus_7115#0 AGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTG 836
consensus_7115#1 AGTCTATTT-TACTCATCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGT-G 589
consensus_7115#2 ATTTTACTTTTTGTTATTTACGAAGTAG----TGGAATTATTAAGTGCAGAACAGCGAGT 556
* * ** ** * * * * * **** ** ** ** * * *
consensus_7115#0 TGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCA 896
consensus_7115#1 TGAACTAGAAGTTATAGAACCTTTTAGGAATTTGAG------------------------ 625
consensus_7115#2 TAAAATAAA--------------------------------------------------- 565
* ** ** *
consensus_7115#0 TTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAA 956
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 TCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTAC 1016
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 CGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGA 1076
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 AGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCC 1136
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 TTTCGAANGGCATGAGANCATGTTTTGTAAATAATTTAAACAAAAATCCGATAAATAATC 1196
consensus_7115#1 ------------------------------------------------------------
consensus_7115#2 ------------------------------------------------------------
consensus_7115#0 CAATCCTCC 1205
consensus_7115#1 ---------
consensus_7115#2 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||