These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1369 fasta sequence [CCGGGACGACGGTGGAAAGTGTAGTAAACCCGTGCGCGGAACGAATTATGTGACGAGGGAATTCCTTTCCTGAAAGGCGGCCACTTTTGTGAGCAGTTCATCGGTGGGGCGTTTTGTTTGCTTTGGGAGAATCTGCCCGGCCCAAACTCCAAACGCTCCAAAGCAAAGGAACGTAAATATTCACGGCACGTGTACGCTATCGTGTGTGTGTGCTTTACCGAGAACAACAAATTCGTTGTTTTACTTCCCGCGTGGATTTAAACACAATCGATGCTACTGTGAGTGGTTCCCGTCGTGTGTCCTCGTCCGCGTCATTCGAGAGCCAGCCACCATGAGGAACTACGTGCCAGACATCATCATTCTGTTCATCATCATCGTAACGATTACCGTCGTCCGGCTGGTATCGCAAATACTGCACGAAACGCTTGCCGATGGACCGCCGGAACTGGTGCTGCCGCCACCGGCCGAAGGGGCCGCACCGAGGCCCGAACTGTCCCTCAGCCAGCTGATCGATCAAAAGTCGAAAGAGTACTCGTGGCTGCTGCGCCTGCTCGTCAACCTGTTCGGCTACTTCTGCATCTTCATCCCGGGCGTGCTGATCTACAAGTATGCCAAGCGCACCAAGTACATGGAACGTTCGGACCGTTCCCATTTGTCCGCGCTGGTAAAGTTTTGCTACTCCGGCACGGGCACGGACGGTTTGGACCGGCCGCTGGATGGCCCGGCCGGGGCCGGTAAGGGATCGACCGGCAACAAGCGCACCACGGCCCAGGAGTGTGCCCTGCTCTGCTACTGTCTGGTGGGGCTGATGGGTTCCTACCTTACCTGGGGCGTGCTGCAGGAGAAAATAATGACCCAAGAGTACGAGGGGCCGGAGAAGCGCAAATCGCACTTCAAAGACTCCCAGTTTCTGGTGTTCTCGAACCGTGTGCTCGGCTTCCTGATAACGGCAGTGTATCTCGTGGCGAAGCGCCAGTTCCGGCACCGTGCCCCACTGTACAAGTATTCGTTCGCTTCGTTTTCCAACATCATGAGCGCCTGGTTCCAGTACGAGGCACTGAAGTTCGTCAACTTCCCCACCCAGGTGTTGGCGAAATCGTGCAAAATCATCCCGGTGATGATCATGGGCAAGATCATATCGCGCAATAAGTACGAGTTTTACGAGTACCTGACCGCGGTCATGATCTCCGTCGGTATGATCTTCTTCCTGACCGGCTCGACCGACGAGTCGAAAGCGTCCGCCATGACCACGCTGACCGGCGTGCTGCTGCTCACGTTCTACATGATCTTCGACAGCTTCACCTCGAACTGGCAGGGCGAGCTGTTCAAATCCTACTCGATGAGCTCGATACAGATGATGTGCGGGGTG] [+] EMBL BM591835 [CCGGGACGACGGTGGAAAGTGTAGTAAACCCGTGCGCGGAACGAATTATGTGACGAGGGAATTCCTTTCCTGAAAGGCGGCCACTTTTGTGAGCAGTTCATCGGTGGGGCGTTTTGTTTGCTTTGGGAGAATCTGCCCGGCCCAAACTCCAAACGCTCCAAAGCAAAGGAACGTAAATATTCACGGCACGTGTACGCTATCGTGTGTGTGTGCTTTACCGAGAACAACAAATTCGTTGTTTTACTTCCCGCGTGGATTTAAACACAATCGATGCTACTGTGAGTGGTTCCCGTCGTGTGTCCTCGTCCGCGTCATTCGAGAGCCAGCCACCATGAGGAACTACGTGCCAGACATCATCATTCTGTTCATCATCATCGTAACGATTACCGTCGTCCGGCTGGTATCGCAAATACTGCACGAAACGCTTGCCGATGGACCGCCGGAACTGGTGCTGCCGCCACCGGCCGAAGGGGCCGCACCGAGGCCCGAACTGTCCCTCAGCCAGCTGATCGATCAAAAGTCGAAAGAGTACTCGTGGCTGCTGCGCCTGCTCGTCAACCTGTTCGGCTACTTCTGCATCTTCATCCCGGGCGTGCTGATCTACAAGTATGCCAAGCGCACCAAGTACATGGAACGTTCGGACCGTT ] [+] EMBL BX612419 [ CGAAACGCTCGCCGATGGACCGCCTGAACTGGTGCTGCCGCCACCGGCCGAAGGGGCCGCACCGAGGCCCGAACTGTCCCTCAGCCAGCTGATCGATCAAAAGTCGAAAGAGTACTCGTGGCTGCTGCGCCTGCTCGTCAACCTGTTCGGCTACTTCTGCATCTTCATCCCGGGCGTGCTGATCTACAAGTATGCCAAGCGCACCAAGTACATGGAACGTTCGGACCGTTCCCATTTGTCCGCGCTGGTAAAGTTTTGCTACTCCGGCACGGGCACGGACGGTTTGGACCGGCCGCTGGATGGCCCGGCCGGGGCCGGTAAGGGATCGACCGGCAACAAGCGCACCACGGCCCAGGAGTGTGCCCTGCTCTGCTACTGTCTGGTGGGGCTGATGGGTTCCTACCTTACCTGGGGCGTGCTGCAGGAGAAAATAATGACCCAAGAGTACGAGGGGCCGGAGAAGCGCAAATCGCACTTCAAAGACTCCCAGTTTCTGGTGTTCTCGAACCGTGTGCTCGGCTTCCTGATAACGGCAGTGTATCTCGTGGCGAAGCGCCAGTTCCGGCACCGTGCCCCACTGTACAAGTATTCGTTCGCTTCGTTTTCCAACATCATGAGCGCCTGGTTCCAGTACGAGGCACTGAAGTTCGTCAACTTCCCCACCCAGGTGTTGGCGAAATCGTGCAAAATCATC ] [+] EMBL BX617707 [ GCGCAAATCGCACTTCAAAGACTCCCAGTTTCTGGTGTTCTTGAACCGTGTGCTCGGCTTCCTGATAACGGCAGTGTATCTCGTGGCGAAGCGCCAGTTCCGGCACCGTGCCCCACTGTACAAGTATTCGTTCGCTTCGTTTTCCAACATCATGAGCGCCTGGTTCCAGTACGAGGCACTGAAGTTCGTCAACTTCCCCACCCAGGTGTTGGCGAAATCGTGCAAAATCATCCCGGTGATGATCATGGGCAAGATCATATCGCGCAATAAGTACGAGTTTTACGAGTACCTGACCGCGGTCATGATCTCCGTCGGTATGATCTTCTTCCTGACCGGCTCGACCGACGAGTCGAAAGCGTCCGCCATGACCACGCTGACCGGCGTGCTGCTGCTCACGTTCTACATGATCTTCGACAGCTTCACCTCGAACTGGCAGGGCGAGCTGTTCAAATCCTACTCGATGAGCTCGATACAGATGATGTGCGGGGTG] consensusID : consensus_7123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 982 fasta sequence [GTGCTACATGAACTCCGACAGCTCCACCTCGAACGGGCAGGGCGAGCTGTTCAAATCCTACTCGATGAGCTCGATACAGAAGAAGTGCGGGGTGAACCTGTTCAGCACACGGTTCACCGGGGCGTCGCTCGCGATGCAGGGCGGCTGCTACAGCTCGCTCGTGTTTGCCGTCGACCATCCGAAGTTTGTGGTCGACTGTGTGGTGCTGTCGATCTCGTCCGCCATCGGGCAGCTGTTCATCTTCTACACGATCGCTACGTTTGGGGCGGTCGTGTTCACGATCATCATGACGCTCCGGCAGGCCGTTGCCATACTGCTGTCCTGCCTGATCTACCAGCACCGGATCTCGTTCCTCGGCGTGGTCGGTGTGCTGATCGTGTTTTTGGCCATCTTTCTCCGGGTGTACTGCAACCAGCGGCTAAAAGCGATCAAGCAACGGCACCAGAGCGCACAGGGCGGTGGTTCGGGCGGCAAACCGCGCATCAACGTCTAGGGGGGCGTGCCCGTTTTACTTAAGCTATAAGTAGCAGCAACAGTAACGGTAGCGGCGTTCATAGTTCATAGATTTGCATTTTACAATTTTAGTCGTTCGAATTTGTAGGCGAAATAGTTGCACCGACGACAGTAGCCAGTTTCGCCTGTGATCGCAGAATCCAATTTTCCGTTTCATCTACCCATAACCCCAGTTAGGATATAACGTTCCAATCCCAGGGCAGTCAGCTGTTCTGGGTGTTTTAGTTTTAGCGAGATAACAGATGTTTTATTTATAACGACATTTGGTGGACGCATCGAGAGCGCAGATGTGTCGCGATTGCGGAAGAGTAACCGAACCGATCAACGATCAACGCTTAAACGCTTGTTCTAACCAAAAAGAAAAAAAAAAGGAGTGACGATCGATCGACGATTGTGAATCGCGATCGTAATATGTATGTTTGTCCTGTGTGTATGTGTACCGTTTGGAAAGGCGATGAAATAAAATTGG] [+] EMBL BX616415 [GTGCTACATGAACTCCGACAGCTCCACCTCGAACGGGCAGGGCGAGCTGTTCAAATCCTACTCGATGAGCTCGATACAGAAGAAGTGCGGGGTGAACCTGTTCAGCACACGGTTCACCGGGGCGTCGCTCGCGATGCAGGGCGGCTGC ] [+] EMBL BX619012 [ AGCTCGATACAGATGATGTGCGGGGTGAACCTGTTCAGCACACTGTTCACCGGGGCGTCGCTCGCGATGCAGGGCGGCTTCTACAGCTCGCTCGTGTTTGCCGTCGACCATCCGAAGTTTGTGGTCGACTGTGTGGTGCTGTCGATCTCGTCCGCCATCGGGCAGCTGTTCATCTTCTACACGATCGCTACGTTTGGGGCGGTCGTGTTCACGATCATCATGACGCTCCGGCAGGCCGTTGCCATACTGCTGTCCTGCCTGATCTACCAGCACCGGATCTCGTTCCTCGGCGTGGTCGGTGTGCTGATCGTGTTTTTGGCCATCTTTCTCCGGGTGTACTGCAACCAGCGGCTAAAAGCGATCAAGCAACGGCACCAGAGCGCACAGGGCGGTGGTTCGGGCGGCAAACCGCGCATCAACGTCTAGGGGGGCGTGCCCGTTTTACTTAAGCTATAAGTAGCAGCAACAGTAACGGTAGCGGCGTTCATAGTTCATAGATTTGCATTTTA ] [+] EMBL BX610248 [ AAAAGCGATCAAGCAACGGCACCAGAGCGCACAGGGCGGTGGTTCGGGCGGCAAACCGCGCATCAACGTCTAGGGGGGCGTGCCCGTTTTACTTAAGCTATAAGTAGCAGCAACAGTAACGGTAGCGGCGTTCATAGTTCATAGATTTGCATTTTACAATTTTAGTCGTTCGAATTTGTAGGCGAAATAGTTGCACCGACGACAGTAGCCAGTTTCGCCTGTGATCGCAGAATCCAATTTTCCGTTTCATCTACCCATAACCCCAGTTAGGATATAACGTTCCAATCCCAGGGCAGTCAGCTGTTCTGGGTGTTTTAGTTTTAGCGAGATAACAGATGTTTTATTTATAACGACATTTGGTGGACGCATCGAGAGCGCAGATGTGTCGCGATTGCGGAAGAGTAACCGAACCGATCAACGATCAACGCTTAAACGCTTGTTCTAACCAAAAAGAAAAAAAAAAGGAGTGACGATCGATCGACGATTGTGAATCGCGATCGTAATATGTATGTTTGTCCTGTGTGTATGTGTACCGTTTGGAAAGGCGATGAAATAAAATTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7123#0 CCGGGACGACGGTGGAAAGTGTAGTAAACCCGTGCGCGGAACGAATTATGTGACGAGGGA 60 consensus_7123#1 ------------------------------------------------------------ consensus_7123#0 ATTCCTTTCCTGAAAGGCGGCCACTTTTGTGAGCAGTTCATCGGTGGGGCGTTTTGTTTG 120 consensus_7123#1 ------------------------------------------------------------ consensus_7123#0 CTTTGGGAGAATCTGCCCGGCCCAAACTCCAAACGCTCCAAAGCAAAGGAACGTAAATAT 180 consensus_7123#1 ------------------------------------------------------------ consensus_7123#0 TCACGGCACGTGTACGCTATCGTGTGTGTGTGCTTTACCGAGAACAACAAATTCGTTGTT 240 consensus_7123#1 ------------------------------------------------------------ consensus_7123#0 TTACTTCCCGCGTGGATTTAAACACAATCGATGCTACTGTGAGTGGTTCCCGTCGTGTGT 300 consensus_7123#1 ------------------------------------------------------------ consensus_7123#0 CCTCGTCCGCGTCATTCGAGAGCCAGCCACCATGAGGAACTACGTGCCAGACATCATCAT 360 consensus_7123#1 -GTGCTACATGAACTCCGACAGCT--CCACCTCGA------ACGGGCAGGGCGAG----- 46 * * * * * *** *** ***** ** *** ** * * consensus_7123#0 TCTGTTCATCATCATCGTAACGATTACCGTCGTCCGGCTGGTATCGCAAATACTGCACGA 420 consensus_7123#1 -CTGTTCAA-ATCCTACT--CGATGAGCTCGATACAGAAG-------AAGTGCGGGGTGA 95 ******* *** * * **** * * * * * * ** * * * ** consensus_7123#0 AACGCTT--GCCGATGGACCGCCGGAACTGGTGCTGCCGCCACCGGCCGAAGGGGCCGCA 478 consensus_7123#1 ACCTGTTCAGCACACGGTTCACCGGGGC-GTCGCTCGCGATGCAGGGCG--GCTGCTACA 152 * * ** ** * ** * **** * * *** ** * ** ** * ** ** consensus_7123#0 CCGAGGCCCGAACTGTCCCTCAGCCAGCTGATCGATCAAAAGTCGAAAGAGTACTCGTGG 538 consensus_7123#1 GCTCG-CTCGTGTTTGCCGTCGACCATCCGA--AGTTTGTGGTCGACTGTGTGGTGCTGT 209 * * * ** * ** ** *** * ** * ***** * ** * ** consensus_7123#0 CTGCTGCGCCTGC--TCGTCAACCTGTTCGGCTACTTCTGCATCTTCATCCCGGGCGTGC 596 consensus_7123#1 CGATCTCGTCCGCCATCGGGCAGCTGTTCATCTTCTACACGATCGCTACGTTTGGGGCGG 269 * ** * ** *** * ****** ** ** * *** * ** * * consensus_7123#0 TGATCTACAAGTATGCCAAG-CGCACCAAGTACATGGAACGTTCGGACCGTTCCCATTTG 655 consensus_7123#1 TCGTGTTCACGATCATCATGACGCTCCGGCAGGCCGTTGCCATACTGCTGTCCTGCCTGA 329 * * * ** * ** * *** ** * * * * ** * * consensus_7123#0 TCCGCGCTGGTAAAGTTTTGCTACTCCGGCACGGGCACGGACGGTTTGGACCGGCCGCTG 715 consensus_7123#1 TCTACCAGCACCGGATCTCGTT-CCTCGGCGTGGTC---GGTGTGCTGATCGTGTTTTTG 385 ** * * * * * * **** ** * * * ** * * ** consensus_7123#0 GATGGCCCGGCCGGGGCCGGTAAGGGATCGACCGGCAACAAGCGCACCACGGCCCAGGAG 775 consensus_7123#1 GCCATCTTTCTCCGGGT--GTACTGCAACCAGCGGCTAAAAGCG-ATCAAGCAACGGCAC 442 * * * *** *** * * * * **** * ***** * ** * * * * consensus_7123#0 TGTGCCCTGCTCTGCTACTGTCTGGTGGGGCTGATGGGTTCCTACCTTACCTGGGGCGTG 835 consensus_7123#1 CAGAGCGCACAGGGCGGTGGTTCGGGCGGCAAACCGCGCATCAACGTCTAGGGGGGCGTG 502 * * ** ** ** ** * * * ** * ******** consensus_7123#0 CTGCAGGAGAAAATAATGACCCAAGAGTACGAGGGGCCGGAGAAGCGCAAATCGCACTTC 895 consensus_7123#1 C--CCGTTTTACTTAAGCTATAAGTAGCAGCAACAGTAACGGTAGCGGCGTTCATAGTTC 560 * * * * *** * ** * * * * **** ** * *** consensus_7123#0 AAAGACTCCCAGTTTCTGGTGTTCTCGAACCGTGTGCTCGGCTTCCTGATAACGGCAGTG 955 consensus_7123#1 ATAGATTTGCATTTTACAATTTT----AGTCGT----TCGAATTTGTAGGCGAAATAGT- 611 * *** * ** *** * ** * *** *** ** * *** consensus_7123#0 TATCTCGTGGCGAAGCGCCAGTTCCGGCACCGTGCCCCACTGTACAAGTATTCGTTCGCT 1015 consensus_7123#1 TGCACCGACGACAGTAGCCAGTTTCGCCTGTG-ATCGCAGAATCCAATTTTCCGTTTCAT 670 * ** * * ******* ** * * * ** * *** * * **** * consensus_7123#0 TCGTTTTCCAACATCATGAGCGCCTG--GTTCCAGTACGAGGCACTGAAGTTCGTCAACT 1073 consensus_7123#1 CTACCCATAACCCCAGTTAGGATATAACGTTCCAATCCCAGG----GCAGTCAGCTGTTC 726 * * * ** * ****** * * *** * *** * consensus_7123#0 TCCCCACCCAGGTGTTGGCGAAATCGTGCAAAATCATCCCGGTGATGATCATGGGCAAGA 1133 consensus_7123#1 TGGGTGTTTTAGTTTTAGCGAGATAACA-GATGTTTTATTTATAACGACATTTGGTGGA- 784 * ** ** **** ** * * * * * ** * ** consensus_7123#0 TCATATCGCGCAATAAGTACGAGTTTTACGAGTACCTGACCGCGGTCATGATCTCCGTCG 1193 consensus_7123#1 -CGCATCG---AGAGCGCAGATGTGTCGCGATTGCGGAAGAGTAACCGAACCGATCAACG 840 * **** * * * ** * *** * * * * * * ** consensus_7123#0 GTATGATCTTCTTCCTGACCGGCTCGACCGACGAGTCGAAAGCGTCCGCCATGACCACGC 1253 consensus_7123#1 --ATCAACGCTTAAACGCTTGTTCTAACCAAAAAGAAAAAAAAAA--GGAGTGACGA--T 894 ** * * * * * *** * ** *** * **** * consensus_7123#0 TGACCGGCGTGCTGCTGCTCACGTTCTACATGATCTTCGACAGCTTCACCTCGAACTGGC 1313 consensus_7123#1 CGATCGACG-ATTGTGAATCGCGATC---GTAATAT---GTATGTTTGTCCTG---TGTG 944 ** ** ** ** ** ** ** * ** * * ** * * ** consensus_7123#0 AGGGCGAGCTGTTCAAATCCTACTCGATGAGCTCGATACAGATGATGTGCGGGGTG 1369 consensus_7123#1 TATGTGTACCGTTTGGAA---AGGCGATGAAATAAAATTGG--------------- 982 * * * *** * * ****** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||