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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 822 fasta sequence
[CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACACGAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATGCGCGAACGGGGCG]
[+] EMBL BM625863 [CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGAC ]
[+] EMBL BM575409 [ ccgCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGAGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTT AAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCTGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGA ]
[+] EMBL BM640680 [ GCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCG ]
[+] EMBL BM645627 [ CCGCAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACACGAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATGCGCGAACGGGGCG]
consensusID : consensus_7125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTTTGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATCGTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCTGGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGTATTTCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGCGGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTNGCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGTGGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAGTTGGGGNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCCCAATAGGGGACCACCCNGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGCCCCCCTTTGGGGTTTAATCCAATTATTGAGCCATTATGTCCTTANGGGAAAGATTCCGACCGTTTAAAAACCCGG]
[+] EMBL AL932854 [TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTTTGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATCGTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCTGGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGTATTTCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGCGGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTNGCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGTGGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAGTTGGGGNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCCCAATAGGGGACCACCCNGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGCCCCCCTTTGGGGTTTAATCCAATTATTGAGCCATTATGTCCTTANGGGAAAGATTCCGACCGTTTAAAAACCCGG]
consensusID : consensus_7125#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence
[AGGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGACTCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGACCGACTGG]
[+] EMBL BX469169 [AGGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGACTCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGACCGACTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7125#0 CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCG 60
consensus_7125#2 ------------------------------------------------------------
consensus_7125#1 ------------------------TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTT 36
consensus_7125#0 CGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTA 120
consensus_7125#2 ------------------------------------------------------------
consensus_7125#1 TGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATC 96
consensus_7125#0 ACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTC 180
consensus_7125#2 ------------------------------------------------------------
consensus_7125#1 GTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCT 156
consensus_7125#0 GTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACA 240
consensus_7125#2 -----------------------------------------------------------A 1
consensus_7125#1 GGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGT--ATT 214
consensus_7125#0 CACACTAATTGTTAAAAAA---AAACAC-TTGCCCAGCCACAAGCG-GGTGAATCTTCTC 295
consensus_7125#2 GGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTC 61
consensus_7125#1 TCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGC 274
* * * ***** ** *** * ** * *
consensus_7125#0 GGGCTCGACAGGGAAAAAGC-AGTGT-------TTTGGCTTAAAAATGGTATTAATAGCA 347
consensus_7125#2 GGGCTCGACAGGGAAAAAGC-AGTGT-------TTTGGCTTAAAAATGGTATTAATAGCA 113
consensus_7125#1 GGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTN 334
** * * * * *** * *** * ** *** * * **** ** *
consensus_7125#0 GCCGCC-----GTGTGTACGAAGGCAGGGAAAACGA-TCGTTT---CCCGGCAGTTTGTC 398
consensus_7125#2 GCCGCC-----GTGTGTACGAAGGCAGGGAAAACGACTCGTTT---CCCGGCAGTTTGTC 165
consensus_7125#1 GCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGT 394
*** ** * **** * * * * ** * * * *** * *
consensus_7125#0 GAGATGACGAAGGCA-CGCAT-CGAAGGTTTGCTAGC-CGCGTTTCCAAAGCTAATGACC 455
consensus_7125#2 GAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGC-CGCGTTTCCAAAGCTAATGACC 224
consensus_7125#1 GGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAG 454
* * * ** ** * ** * ** ** * * * *
consensus_7125#0 TCGGGCAAACAGCACACTTTCGTCG-AGACGGACTCGG-TGCG-CTACG-TGTACCAGCC 511
consensus_7125#2 TCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGAC 284
consensus_7125#1 TTGGG-GNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCC-CAATAGGGGACCACCC 512
* *** * * * * * * * * * * * * **** *
consensus_7125#0 --GCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGAT 569
consensus_7125#2 CGACTGG----------------------------------------------------- 291
consensus_7125#1 NGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGC 572
*
consensus_7125#0 CTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAG 629
consensus_7125#2 ------------------------------------------------------------
consensus_7125#1 CCC---------CCTTTGGGGTTTAATCCAATTATTGAG--CCATTATGTCCTTANGGGA 621
consensus_7125#0 AAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTC 689
consensus_7125#2 ------------------------------------------------------------
consensus_7125#1 AAGATTCCGACCGTTTAAAAACCCGG---------------------------------- 647
consensus_7125#0 GGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACAC 749
consensus_7125#2 ------------------------------------------------------------
consensus_7125#1 ------------------------------------------------------------
consensus_7125#0 GAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATG 809
consensus_7125#2 ------------------------------------------------------------
consensus_7125#1 ------------------------------------------------------------
consensus_7125#0 CGCGAACGGGGCG 822
consensus_7125#2 -------------
consensus_7125#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||