These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1430 fasta sequence [ACCGGCAGAATGCGAAGTTTATGCGGCTGGCCGAAGCGGTCAAGGAGTCGTTCGTGTACATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCATCGGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCGAGTAATCGACGCGAACTGCGCGAGCTTGCTTTTACGTCAGGTCATTAGCGTACCGCCATCATGCGTTGATACAGCGAAGGGATGGGAAGGGTTGGCTCGTTTTGTGCGACCGAAGATACACTCTTTATTACGTATACAGCTCCAGATCTACAAATTTACCAGTTAT] [+] EMBL BX625729 [ACCGGCAGAATGCGAAGTTTATGCGGCTGGCCGAAGCGGTCAAGGAGTCGTTCGTGTACATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCATCGGGCG ] [+] EMBL BX605173 [ AGGAGTCGTTCGTTTACATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCTGGTT ] [+] EMBL BM591693 [ ccgCATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCAT ] [+] EMBL BX615628 [ TATCCAACTTTCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCATCGGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACA ] [+] EMBL BX621623 [ AAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCGAGTAATCGACGCGAACTGCGCGAGCTTGCTTTTACGTCAGGTCATTAGCGTACCGCCATCATGCGTTGATACAGCGAAGGGATGGGAAGGGTTGGCTCGTTTTGTGCGACCGAAGATACACTCTTTATTACGTATACAGCTCCAGATCTACAAATTTACCAGTTAT] consensusID : consensus_7129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [GCAGAATCGCCACGAGNNAGTTGTACTGCCCTTTGGCATCNGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCAGAGTTAATTCGACGCGAAACTGCGCGAAGCTTGCGTTTAAACGGTTCAGGTCATTCAGCGGTAACCGCATCATGCCGTTGGAATACAAGCGGAAGGGATGGGAANGGTTGGNCTACGAT] [+] EMBL BX467316 [GCAGAATCGCCACGAGNNAGTTGTACTGCCCTTTGGCATCNGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCAGAGTTAATTCGACGCGAAACTGCGCGAAGCTTGCGTTTAAACGGTTCAGGTCATTCAGCGGTAACCGCATCATGCCGTTGGAATACAAGCGGAAGGGATGGGAANGGTTGGNCTACGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7129#0 ACCGGCAGAATGCGAAGTTTATGCGGCTGGCCGAAGCGGTCAAGGAGTCGTTCGTGTACA 60 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 TCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCA 120 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 ACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGC 180 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 TCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCC 240 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 TGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCA 300 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 GTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGG 360 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 TGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACG 420 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 AGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGC 480 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 CCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATC 540 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 TGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACT 600 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 TCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATA 660 consensus_7129#1 ------------------------------------------------------------ consensus_7129#0 ACGTGGTGAACAAGCGGGCGGAACCGG-GTGCATCAGTTGTACTGCCCTTTGGCATCGGG 719 consensus_7129#1 -----------------GCAGAATCGCCACGAGNNAGTTGTACTGCCCTTTGGCATCNGG 43 ** *** ** * ********************** ** consensus_7129#0 CGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAG 779 consensus_7129#1 CGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAG 103 ************************************************************ consensus_7129#0 ATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTG 839 consensus_7129#1 ATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTG 163 ************************************************************ consensus_7129#0 CTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCT 899 consensus_7129#1 CTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCT 223 ************************************************************ consensus_7129#0 CTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTAC 959 consensus_7129#1 CTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTAC 283 ************************************************************ consensus_7129#0 TATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCT 1019 consensus_7129#1 TATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCT 343 ************************************************************ consensus_7129#0 ACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAA 1079 consensus_7129#1 ACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAA 403 ************************************************************ consensus_7129#0 TAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGC 1139 consensus_7129#1 TAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGC 463 ************************************************************ consensus_7129#0 AACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCC 1199 consensus_7129#1 AACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCC 523 ************************************************************ consensus_7129#0 TATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAG 1259 consensus_7129#1 TATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAG 583 ************************************************************ consensus_7129#0 ACCC-GAGTAA--TCGACGCGAA-CTGCGCGA-GCTTGCTTTTACG----TCAGGTCATT 1310 consensus_7129#1 ACCCAGAGTTAATTCGACGCGAAACTGCGCGAAGCTTGCGTTTAAACGGTTCAGGTCATT 643 **** **** * ********** ******** ****** **** ********** consensus_7129#0 -AGCG-TACCGCCATCATGC-GTTG--ATACAGC--GAAGGGATGGGAAGGGTTGGCTCG 1363 consensus_7129#1 CAGCGGTAACCGCATCATGCCGTTGGAATACAAGCGGAAGGGATGGGAANGGTTGGNCTA 703 **** ** * ******** **** ***** ************* ****** consensus_7129#0 TTTTGTGCGACCGAAGATACACTCTTTATTACGTATACAGCTCCAGATCTACAAATTTAC 1423 consensus_7129#1 CGAT-------------------------------------------------------- 707 * consensus_7129#0 CAGTTAT 1430 consensus_7129#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||