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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1299 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGCGACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTGGTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAAGGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAATGCGCAACGGGCAGAGCCGAACTGTAGGATATAGAGGAATCACAACATGCTCACTTACCTTAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAATAACAACACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTG-AAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGA---A-AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTT-TCCAAAACCGGGCAAGATCGAAAA--ACACACACAATGCCGCACTCTCACTAAAGGGCC-------AAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGGCCCCCACTGTAGGCAAATGGGGGGAACACGCGTGGACGACTGGAATGAATGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTTGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTC]
[+] EMBL BM639427 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGCGACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTGGTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAAGGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGC ]
[+] EMBL BM628072 [ ccgGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGCGACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTGGTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAATGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAATGCGCAACGGGCAGAGCCGAACTGTAGGATATAGAGGAATCACAACA ]
[+] EMBL BM591343 [ ccgCGAAAGGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAATGCGCAACGGGCAGAGCCGAACTGTAGGAAATAGAGGAATCACAACATGCTCACTTACCTTAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAATAACAACACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTG AAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGA A AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTT TCCAAAACCGGGCAAGATCGAAAA ACACACACAATGCCGCACTCTCACTAAAGGGCC AAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGGCCCCCACTGTAGGCAAATGGGGGG ]
[+] EMBL BM635244 [ ccgGAGGAATCACAACATGCTCACTTACCTTAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAATAACA ACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTGAAAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCTAGTAGCGTAGTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTTACCCAAAACCGGGCAAGATCGAAAAACACACACACAATGCCGCACTCTCACTAAAGGGCCAAAAACAAAAAAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACAT GGCCCCCACTGTAGGCAAATGGGGGAAACACGCGTGGACGACTGGAATGAATGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTTGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTC]
consensusID : consensus_7140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCGGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTGAAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGAAAGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTTTCCAAAACCGGGCAAGATCGAAAAACACACACAATGCCGCACTCTCACTAAAGGGCCAAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGCCCCCACTGTAGGCAAATGGGGGGAAACACGCGTGGACGACTGGAATGAAGCAAACGATGATGCTATATAGCTAGGGAGATGCGTTTAAGAGGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTGGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTCGTAATGGTTTGCGGGCATCGTTGC]
[+] EMBL BM651000 [CCGGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTGAAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGAAAGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTTTCCAAAACCGGGCAAGATCGAAAAACACACACAATGCCGCACTCTCACTAAAGGGCCAAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGCCCCCACTGTAGGCAAATGGGGGGAAACACGCGTGGACGACTGGAATGAAGCAAACGATGATGCTATATAGCTAGGGAGATGCGTTTAAGAGGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTGGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTCGTAATGGTTTGCGGGCATCGTTGC]
consensusID : consensus_7140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[CCGGTGCGAGCGTTTGATCGTTCCCCCCCCCCGCATACAGTGAACTTAATCTAGGCACGGGAAAATTACCTGTAAATTGAAGGAAACAAAAAAAATCTATTCATAGGGAAGGTGAAAAGAATGTTTTTTTTTAGCCCGATTCATTTTCTTCTTAACGCAAAATCATGTTTCACGATCTCAACTCTATTCGTTAGGGGACATTTTTTTAAATATTTTTTTTCTGCAGAAAGCGGTGTCATCTGCATCGCATTTCGGCATTGCTCATTCGTTGTTGGAGGGCGAGAGAGGGGTTGGGGTGGGCGAGTGTCCACTGTATTTGCGTTTTCCCGCTAGCCAAACGTGCAAACTGTAGAAACGCAAACACACACACACGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA]
[+] EMBL BM597040 [CCGGTGCGAGCGTTTGATCGTTCCCCCCCCCCGCATACAGTGAACTTAATCTAGGCACGGGAAAATTACCTGTAAATTGAAGGAAACAAAAAAAATCTATTCATAGGGAAGGTGAAAAGAATGTTTTTTTTTAGCCCGATTCATTTTCTTCTTAACGCAAAATCATGTTTCACGATCTCAACTCTATTCGTTAGGGGACATTTTTTTAAATATTTTTTTTCTGCAGAAAGCGGTGTCATCTGCATCGCATTTCGGCATTGCTCATTCGTTGTTGGAGGGCGAGAGAGGGGTTGGGGTGGGCGAGTGTCCACTGTATTTGCGTTTTCCCGCTAGCCAAACGTGCAAACTGTAGAAACGCAAACACACACACACGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7140#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCGCGCGCGCGCACATTGACATTGTTTACTGT 60
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 ACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAAC 120
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 AACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTT 180
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 TCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACAC 240
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC 300
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 ACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGC 360
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 GACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTG 420
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 GTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAAGG 480
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 AAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACA 540
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 CAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAA 600
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 TGCGCAACGGGCAGAGCCGAACTGTAGGATATAGAGGAATCACAACATGCTCACTTACCT 660
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 TAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAAT 720
consensus_7140#1 ------------------------------------------------------------
consensus_7140#2 ------------------------------------------------------------
consensus_7140#0 AACAACACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACA-ACAAAAA 779
consensus_7140#1 -------------------CCGGTACATTCAATGTGGGAAGATAACACAACA-ACAAAAA 40
consensus_7140#2 -------------------CCGGTGCGAGCGTTTGATCGTTCCCCCCCCCCGCATACAGT 41
** * * * * * * * * *
consensus_7140#0 GAAGTGAAAAAAAACAAAAAAAAA--ATCTGAAA--CAAATTCAACCTGGCGAATACGTA 835
consensus_7140#1 GAAGTGAAAAAAAACAAAAAAAAA--ATCTGAAA--CAAATTCAACCTGGCGAATACGTA 96
consensus_7140#2 GAACTTAATCTAGGCACGGGAAAATTACCTGTAAATTGAAGGAAACAAAAAAAATCTATT 101
*** * ** * ** **** * *** ** ** *** *** *
consensus_7140#0 TGTGTGTGCGCGTGTACCAAGGGTCTGC----AGGGCAAGTAGCGTAGTAA--AAGAGAA 889
consensus_7140#1 TGTGTGTGCGCGTGTACCAAGGGTCTGC----AGGGCAAGTAGCGTAGTAA--AAGAGAA 150
consensus_7140#2 CATAGG-GAAGGTGAAAAGAATGTTTTTTTTTAGCCCGATTCATTTTCTTCTTAACGCAA 160
* * * *** * * ** * ** * * * * * ** **
consensus_7140#0 AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGA-ATATCTAGGAAAAATCGTTTC 948
consensus_7140#1 AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGA-ATATCTAGGAAAAATCGTTTC 209
consensus_7140#2 AATCATGTTTCACGATCTCAACTCTATTCGTTAGGGGACATTTTTTTAAATATTTTTTTT 220
* * ** * * * * *** ** * * ** * * ***
consensus_7140#0 CAAAACCGGGCAAGATCGA--AAAACACAC----ACAATGCCGCACTCTCACTAAAGGGC 1002
consensus_7140#1 CAAAACCGGGCAAGATCGA--AAAACACAC----ACAATGCCGCACTCTCACTAAAGGGC 263
consensus_7140#2 CTGCAGAAAGCGGTGTCATCTGCATCGCATTTCGGCATTGCTCATTCGTTGTTGGAGGGC 280
* * ** ** * * ** ** *** * * *****
consensus_7140#0 CAAATAAAAACTGGTTAAGGCAGAG--CAACTAGAGCAAGACTTAAGGAAAAACAAGTAC 1060
consensus_7140#1 CAAATAAAAACTGGTTAAGGCAGAG--CAACTAGAGCAAGACTTAAGGAAAAACAAGTAC 321
consensus_7140#2 GAGAGAGGGGTTGGGGTGGGCGAGTGTCCACTGTATTTGCGTTTTCCCGCTAGCCAAACG 340
* * * *** *** * *** * ** * * *
consensus_7140#0 CGCGAAGCGAGAAGAAACCCCCTCACATGGGCCCCCACTGTAGGCAAATGGGGGGAA-CA 1119
consensus_7140#1 CGCGAAGCGAGAAGAAACCCCCTCACATGG-CCCCCACTGTAGGCAAATGGGGGGAAACA 380
consensus_7140#2 TGCAAACTGTAGAAACGCAAACACACACACACGCGCGC-GCGCGCACATTGACATTG-TT 398
** ** * * * * * **** * * * * * *** ** *
consensus_7140#0 CGCGTGGACGACTGGAATGAAT-------------------------------------- 1141
consensus_7140#1 CGCGTGGACGACTGGAATGAAGCAAACGATGATGCTATATAGCTAGGGAGATGCGTTTAA 440
consensus_7140#2 TAC-TGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGA--AAATAAATAAGTAAAA 455
* ** ** * ** * *
consensus_7140#0 ---GACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTT 1198
consensus_7140#1 GAGGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTT 500
consensus_7140#2 GAAAACAACAACCAAATTACCACGACGCGC-GTCAGCAGGCAAAAGCGCGAAATGCAACA 514
** * * ** *** ** * ** * ** * * **
consensus_7140#0 GCTCCAAACTGTTTTGCAATGCATCGGGCAAGAGAGCGAGGCACG-GCTCTGGTGTAAAG 1257
consensus_7140#1 GCTCCAAACTGTTTGGCAATGCATCGGGCAAGAGAGCGAGGCACG-GCTCTGGTGTAAAG 559
consensus_7140#2 TAATCACGTTTCACACCCACAC-TCACACAC-ACACTCACACACACACACACACACACAC 572
** * * * * ** ** * * * *** * * * *
consensus_7140#0 AGATG-ACACAAAAACACACA-GCACACACATGAACCCCCCCTC---------------- 1299
consensus_7140#1 AGATG-ACACAAAAACACACA-GCACACACATGAACCCCCCCTCGTAATGGTTTGCGGGC 617
consensus_7140#2 ACACACACACACACACACACACACACACACACACACACACACACACA------------- 619
* * ***** * ******* ******** ** * * * *
consensus_7140#0 --------
consensus_7140#1 ATCGTTGC 625
consensus_7140#2 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||