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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 975 fasta sequence
[CCGCCCACGCGTCCGAAACGCAAAACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC-ACTGCAGCTTTGTTTCAGCGTC-TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG-ACGGACAAGGAGTCGATGCGCG-TGACGCTCAAGAGCAGCGCCAAGGGCGC-GACC-GTG-GCCGGCTCGACCACCTTTCTCGGC-GGGC-TGCTGGCCGGCCCGGTCGGCCTGTTCG-TGGGC-GGTGCGGTC-GGC-GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC-GGCACGACCTGACGGTGCAG-GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG-ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAG-TGGTAGCTTAGATTAATC-GGTAGGGAATTGACGAAACCTCCTGGGTTGGTGCCCTTTGTCCAATGGTTCAATTCANTTGTCAGTTAAGAATATAAAAGGCCTCTGCTGAATGGGGCACTTACGTAACAAAAGANCACGACAGATAAGTAGTTAAAGGCATTCGGAGANAGGTTAGCCGGTTGGGGNCTTTNGGNTAGGCCGCCGTGGGGGAAGGAACGNCCNAGAGNGTTANACCAGTTCTCCANNAAAAGTATAANTTNTCCCGGGGACCTTANGCAACATAACNAGCATCCANACNACACGACCAGTANGCATCGACCCAGGGGAATTTGNTC]
[+] EMBL BM590886 [CCGCCCACGCGTCCGAAACGCAAAACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC ACTGCAGCTTTGTTTCAGCGTCTTTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTC GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGT CACACACACACACACACTCTCTGATATGGTGCGGTTAG TGGTAGCTTAGATTAATC GGTAGGGAATTGACGAAc ]
[+] EMBL BX621767 [ ggGCAANACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC ACTGCAGCTTTGTTTCAGCGTC TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTG GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGC ]
[+] EMBL BX628401 [ ACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC ACTGCAGCTTTGTTTCAGCGTC TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTG GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTT ]
[+] EMBL AL933806 [ aAAATGTGTTCGAATGCGCATTAGCACCACAGCTACTGCAGCTTTGTTTCAGCGTC TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTGTACGGACAAGGAGTCGATGCGCGTTTACGCTCAAGAGCAGCGCCAAGGGCGCTGACCTGTGTGCCGGCTCGA CACCTTTCTCGGCTGGGCTTGCTGGCCGGCCCGGTCGGCCTGTTCGTTGGGCNGGTGCGGTCTGGCTGGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCCTGGCACGACCTGACGGTGCAGTGAGCAGGAGCTGGTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCGTACCGATCTGGTGATGGTGCTGTCCCTGCTGACGG CAACGGGGCCG CCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGNTGGTAGCTTAGATTAATCGGGTAGGGAATTGACGAAACCTCCTGGGTTGGTGCCCTTTGTCCAATGGTTCAATTCANTTGTCAGTTAAGAATATAAAAGGCCTCTGCTGAATGGGGCACTTACGTAACAAAAGANCACGACAGATAAGTAGTTAAAGGCATTCGGAGANAGGTTAGCCGGTTGGGGNCTTTNGGNTAGGCCGCCGTGGGGGAAGGAACGNCCNAGAGNGTTANACCAGTTCTCCANNAAAAGTATAANTTNTCCCGGGGACCTTANGCAACATAACNAGCATCCANACNACACGACCAGTANGCATCGACCCAGGGGAATTTGNTC]
[+] EMBL BX617381 [ TCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTG GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAG TGGTAGCTTAGATTAATC GGTAGGGAATTGACG AACCT CTGG T GTG CCTTT TTCAAT GTT AATT A TT T A TTAAG ATATAAA GCTTGTGATGgg ]
consensusID : consensus_7156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[TCCGCCCAGAAGCGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACCGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATCGGTAGGGAATTGACGAACCTCTGGTGTGCCTTTTTCAATGTTAATTATTTATTAAGATATAAAGCTTGTGATGGGATTTTGTAACACAAAAAAAAAGATAATAGTTAAGCATCGAAAGTAGCGTGGCTTGTGGCGCGGGAGAGCAAAATAAATTTCAAATTATTCGGGCTAGAAGCAACCGACTGTTAGCTAAAAAAAATATNCACAANAAGGCAGGCATGTTGCG]
[-] EMBL BX466817 [TCCGCCCAGAAGCGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACCGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATCGGTAGGGAATTGACGAACCTCTGGTGTGCCTTTTTCAATGTTAATTATTTATTAAGATATAAAGCTTGTGATGGGATTTTGTAACACAAAAAAAAAGATAATAGTTAAGCATCGAAAGTAGCGTGGCTTGTGGCGCGGGAGAGCAAAATAAATTTCAAATTATTCGGGCTAGAAGCAACCGACTGTTAGCTAAAAAAAATATNCACAANAAGGCAGGCATGTTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7156#0 CCGCCCACGCGTCCGAAACGCAAAACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAAT 60
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GTGTTCGAATGCGCATTAGCACCACAGCACTGCAGCTTTGTTTCAGCGTCTTTTTTCCGT 120
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 CCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTG 180
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GCCACGCTGACGGACAAGGAGTCGATGCGCGTGACGCTCAAGAGCAGCGCCAAGGGCGCG 240
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 ACCGTGGCCGGCTCGACCACCTTTCTCGGCGGGCTGCTGGCCGGCCCGGTCGGCCTGTTC 300
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GTGGGCGGTGCGGTCGGCGGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCG 360
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GTCAGCGAGATCATCCGGCACGACCTGACGGTGCAGGAGCAGGAGCGGCTCAAGCAGCGG 420
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 ATCGTGTCCGCGCTGTCCGAATTCCACGCGACCGATCTGGTGATGGTGCTGTCCCTGCTG 480
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 ACGGCCAACGGGGCCGCCCAGAAG-GCGGTCCTCACGACGGTCGTCACCTTTCTAACGAA 539
consensus_7156#1 ------------TCCGCCCAGAAGCGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAA 48
*********** ***********************************
consensus_7156#0 C-GAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAA 598
consensus_7156#1 CCGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAA 108
* **********************************************************
consensus_7156#0 GTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATC 658
consensus_7156#1 GTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATC 168
************************************************************
consensus_7156#0 GGTAGGGAATTGACGAAACCTCCTGGGTTGGTGCCCTTTGTCCAATGGTTCAATTCANTT 718
consensus_7156#1 GGTAGGGAATTGACGAA-CCTC------TGGTGTGCCTTTTTCAATG-------TTAATT 214
***************** **** ***** * ** * ***** * * **
consensus_7156#0 GTCAGTTAAGAATATAAAAGGCCTCTGCTGAATGGGGCACTTACGTAACAAAAGANCACG 778
consensus_7156#1 ATTTATTAAG---ATATAAAGCTTGTG----ATGGGA---TTTTGTAACACAAAAA---A 261
* ***** *** ** ** * ** ***** ** ****** ** *
consensus_7156#0 ACAGATAAGTAGTTAAAGGCATTCGGAGANAGGTTAGCCGGTTGGGGNCTTTNGGNTAGG 838
consensus_7156#1 AAAGATAA-TAGTTAA--GCAT-CGAAAGTAGCGTGGCTTGT--GGCGCGGGAGAGCAAA 315
* ****** ******* **** ** * ** * ** ** ** * * *
consensus_7156#0 CCGCCGTGGGGGAAGGAACGNCCNAGAGNGTTANACCAGTTCTCCANNAAAAGTATAANT 898
consensus_7156#1 ATAA-ATTTCAAATTATTCGGGCTAGAAGCAACCGACTGTTAGCTAAAAAAAATATNCAC 374
* * ** * *** * *** * * **** ***
consensus_7156#0 TNTCCCGGGGACCTTANGCAACATAACNAGCATCCANACNACACGACCAGTANGCATCGA 958
consensus_7156#1 AANAAGGCAGGCATGTTGCG---------------------------------------- 394
* * * * **
consensus_7156#0 CCCAGGGGAATTTGNTC 975
consensus_7156#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||