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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1737 fasta sequence
[CGCATCATGATTTCATGGGATAGATCTAGCAAATCGCGCAAAAAAACTATCACGAAACAAAACACACAAACACATAAACAAACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCGCTTATGAGAGCATTACGGTATGTTTTCAACAGCCAAATCACCACAAACGAACGCTTGCAGCTATGGTCGATCGCATTCCAGCGCATCCATACCATCTCCTCCGTCGATCGTTCCTAGTCCTTTATTTATTAATGTTGATATGATGGTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGGGAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACT-CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTTTACTGCCATGAACGGTTTTGACCGTTGCTGCGAAAAGGTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCACCATGTGAGGAGCAGCGACCAAACTGGTTGCATATNTTCCGGAATATGTGTAGCTAGGCCACCGGATACGGCAAAAAGTATGAAGTATACTNNCTTTCATCATCTACAAAATTTACTGCCAAGTTCATTTGTATCGAAATNTCTGTNGCTTGCTAACNACTGGCTGCTCGGGANNGCTCNGTAAANCTACCAAAACCAGTGTTCAAATTTAATAGGAACAAACAAACGTACAGCAATCACATTTTCGGAGCAGACGTTCACTAGCAAAGCTTTGTTTGCCCTATGCTTTACAGTAACTTTCAGCCTAAAGTAGCTAATGTATAAATGTATTCAGGTTCTCTTAGAAGACTGCCACCAAAACTGATCACAGCACTAACCGTACAAGTACGCTCCTTGTTTTGTACAGCAGGATCGACACTCGCACGGCGTACT]
[+] EMBL BX605006 [CGCATCATGATTTCATGGGATAGATCTAGCAAATCGCGCAAAAAAACTATCACGAAACAAAACACACAAACACATAAACAAACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGTTGCAAATTCTTACTAGCGTACTG ]
[+] EMBL BX616093 [ TCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCGCTTATGAGAGCATTACGGTATGTTTTCAACAGCCAAATCACCACAAACGAACGCTTGCAGCTATGGTCGATCGCATTCCAGCGCATCCATACCATCTCCTCCGTCGATCGTTCCTAGTCCTTTATTTATTAATGTTGATATGATGGTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGGGAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACTCCTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCC ]
[+] EMBL BX608204 [ GATGGTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGGGAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACT CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTT ]
[+] EMBL CF542116 [ CGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAGAATGCAATGCACTGCTGCGAAAAGTGATGCCAACT CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTTTACTGCCATGAACGGTTTTGACCGTTGCTGCGAAAAGGTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCACCATGTGAGGAGCAGCGACCAAACTGGTTGCATATNTTCCGGAATATGTGTAGCTAGGCCACCGGATACGGCAAAAAGTATGAAGTATACTNNCTTTCATCATCTACAAAATTTACTGCCAAGTTCATTTGTATCGAAATNTCTGTNGCTTGCTAACNACTGGCTGCTCGGGANNGCTCNGTAAANCT ]
[+] EMBL BX625126 [ TCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCTAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGG AATGCAATGTACTGCTGCGAAAAGTGATGCCAACT CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTTTACTGCCATGGACGGTTTTGACCGTTGCTGCGAAAAGGTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCACCATGTGAGGAGCAGCGACCAAACTGGTTGCATATTTTCCGGAATATGTGTAGCAAGGCCACCGGATACGGCAAAAAGTATGAAGTATACTTCCTTTCACCAACTACAAAATTTACTGCCAAGTTCATTTGTATCGAAATTTCTGTTGCTTGCTAACCACTGGCTGCTCCGGAAGGCTCGGTAAAACTACCAAAACCAGTGTTCAAATTTAATAGGAACAAACAAACGTACAGCAATCACATTTTCGGAGCAGACGTTCACTAGCAAAGCTTTGTTTGCCCTATGCTTTACAGTAACTTTCAGCCTAAAGTAGCTAATGTATAAATGTATTCAGGTTCTCTTAGAAGACTGCCACCAAAACTGATCACAGCACTAACCGTACAAGTACGCTCCTTGTTTTGTACAGCAGGATCGACACTCGCACGGCGTACT]
consensusID : consensus_7160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence
[AATCGGCACGAGGTANNCAAAACACACAAACACATAAACANNACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAGAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCACGTATGAGAGCATTACGGTATGTTTGNGCAACAGCCAAATCANCCACAAAGCGGAACGCTTGCAGCTATGGTCGATCGGCATTCCAGGCGGCAATCCATAGCCNTCTTGCCCTCCGTNCGAATCGGNTTCCCTAGNTCCGTTNTAGTTTGGNAGTTGACAGTGGTTCGANTATGGAGTNGGTTTAAAATATCAAATGGGGTTGAGCGTGCTTTNTACCCCCGAAAA]
[+] EMBL BX469674 [AATCGGCACGAGGTANNCAAAACACACAAACACATAAACANNACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAGAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCACGTATGAGAGCATTACGGTATGTTTGNGCAACAGCCAAATCANCCACAAAGCGGAACGCTTGCAGCTATGGTCGATCGGCATTCCAGGCGGCAATCCATAGCCNTCTTGCCCTCCGTNCGAATCGGNTTCCCTAGNTCCGTTNTAGTTTGGNAGTTGACAGTGGTTCGANTATGGAGTNGGTTTAAAATATCAAATGGGGTTGAGCGTGCTTTNTACCCCCGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7160#0 CGCATCATGATTTCATGGGATAGATCTAGCAAATCGCGCAAAAAAACTATCACG-AAACA 59
consensus_7160#1 -----------------------------------------AATCGGCACGAGGTANNCA 19
** * * * * **
consensus_7160#0 AAACACACAAACACATAAACAAA-CAAATCGAAAATCGACTAACCGAAACGACAAACAAA 118
consensus_7160#1 AAACACACAAACACATAAACANNACAAATCGAAAATCGACTAACCGAAACGACAAACAAA 79
********************* ************************************
consensus_7160#0 ACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGAC 178
consensus_7160#1 ACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGAC 139
************************************************************
consensus_7160#0 CACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACG 238
consensus_7160#1 CACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACG 199
************************************************************
consensus_7160#0 AAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGG 298
consensus_7160#1 AAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGG 259
************************************************************
consensus_7160#0 AAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAA-AGGGTAA 357
consensus_7160#1 AAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAGAGGGTAA 319
**************************************************** *******
consensus_7160#0 TTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACAC 417
consensus_7160#1 TTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACAC 379
************************************************************
consensus_7160#0 AATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGA 477
consensus_7160#1 AATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGA 439
************************************************************
consensus_7160#0 TACATTTAGTTAGCATAG-TTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGC 536
consensus_7160#1 TACATTTAGTTAGCATAGGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGC 499
****************** *****************************************
consensus_7160#0 AAGATCAGAGTTAGCAGCAGTCCCGCTTATGAGAGCATTACGGTATGTTTTC--AACAGC 594
consensus_7160#1 AAGATCAGAGTTAGCAGCAGTCCCACGTATGAGAGCATTACGGTATGTTTGNGCAACAGC 559
************************ * *********************** ******
consensus_7160#0 CAAATCACC-ACAAAC--GAACGCTTGCAGCTATGGTCGATCG-CATTCCAG-CGC--AT 647
consensus_7160#1 CAAATCANCCACAAAGCGGAACGCTTGCAGCTATGGTCGATCGGCATTCCAGGCGGCAAT 619
******* * ***** ************************* ******** ** **
consensus_7160#0 CCATA-CCATCTCCTCCGTCGATCGTTCCTAGTCCTTTATTTATTAATGTTGATATGATG 706
consensus_7160#1 CCATAGCCNTCTTGCCCTCCGTNCGAATCGGNTTCCCTAGN--TCCGTTNTAGTTTGGNA 677
***** ** *** ** ** ** * * * ** * * * * **
consensus_7160#0 GTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGG 766
consensus_7160#1 GTTGA-----CAGTGGTT---CGANTATGGAGTNGGTTTAAAATATCAAATGGGGTT--G 727
*** * ** *** * ** * * *** * ** ** * ** *
consensus_7160#0 GAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCAC 826
consensus_7160#1 AGCGTGCTT----TNTAC-CCCCGAAAA-------------------------------- 750
****** * * * * *** * *
consensus_7160#0 AGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAA 886
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAA 946
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAAT 1006
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTA 1066
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGA 1126
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 ACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACTCTTTTTGAAACCTTTTTGAAG 1186
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CTATAACGACACTCACTACCCTTTACTGCCATGAACGGTTTTGACCGTTGCTGCGAAAAG 1246
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCAC 1306
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CATGTGAGGAGCAGCGACCAAACTGGTTGCATATNTTCCGGAATATGTGTAGCTAGGCCA 1366
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CCGGATACGGCAAAAAGTATGAAGTATACTNNCTTTCATCATCTACAAAATTTACTGCCA 1426
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AGTTCATTTGTATCGAAATNTCTGTNGCTTGCTAACNACTGGCTGCTCGGGANNGCTCNG 1486
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TAAANCTACCAAAACCAGTGTTCAAATTTAATAGGAACAAACAAACGTACAGCAATCACA 1546
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TTTTCGGAGCAGACGTTCACTAGCAAAGCTTTGTTTGCCCTATGCTTTACAGTAACTTTC 1606
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AGCCTAAAGTAGCTAATGTATAAATGTATTCAGGTTCTCTTAGAAGACTGCCACCAAAAC 1666
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TGATCACAGCACTAACCGTACAAGTACGCTCCTTGTTTTGTACAGCAGGATCGACACTCG 1726
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CACGGCGTACT 1737
consensus_7160#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||