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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 777 fasta sequence
[CCGGTTTTTGCCGTGATACACTAAGTTTCTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTGATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATGAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTAATACTCTCCTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAATTTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTATAGTCTTTTTTTCTANAACTAATATATTGCCTAAAAACTGCTGTTATACTATTTAACAAATGAACTTGTTGCAATAAACAACTATTCAGGTCATGTCACTAACGTAACCACAGGGTGAGAATATTTCTTTTG]
[+] EMBL BM637283 [CCGGTTTTTGCCGTGATACACTAAGTTTCTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTGATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGCATCGTGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATGAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTAATACTCTCCTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAATTTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTATA ]
[+] EMBL BX623288 [ GCTGAAGTGGCTACTCTCATGTTGATACTCATAGAAGAGGAAGGCGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATAGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCGTATTGTGCGTGATGTTTGTACATACATAATAAATGAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGGTAACAATTCCATACTAATACTCTCTTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAATTTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTAAAGTCTTTTTTTCTANAACTAATATATTGCCTAAAAACTGCTGTTATACTATTTAACAAATGAACTTGTTGCAATAAACAACTATTCAGGTCATGTCACTAACGTAACCACAGGGTGAGAATATTTCTTTTG]
[+] EMBL BM639598 [ ccgGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGCATTGGGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTCTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATTAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTAATACTCTCCTCTTACTTATAAGATGA ]
consensusID : consensus_7165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[AATGCGGAGATCACTCCGGTTGTGTTTTTGCCGTGATACACAAAGTTTCTTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTCATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATAACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAAATGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGAAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTNTGTACACACATAATAAATGAATNGAAGGAATACGTTAAGGTATNATNTCACTAAAAAAAAAA]
[+] EMBL CF541976 [AATGCGGAGATCACTCCGGTTGTGTTTTTGCCGTGATACACAAAGTTTCTTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTCATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATAACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAAATGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGAAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTNTGTACACACATAATAAATGAATNGAAGGAATACGTTAAGGTATNATNTCACTAAAAAAAAAA]
consensusID : consensus_7165#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[CGTCCCTAAAGACAGATCCATGCTGGAGTAGAAATGAAAATGAAAGAGACTCTGACGCAATTCGTAAAAATGAAAGGAAAAATTTATGCCAATAAGAGGCGCGGGTCAAAAATCTCAAACATATCAGAGGGCGACAAAGTTAGAATTCGGAATTGTGATTCAGGTAAACTAGAATCGAAATGGTCAAAGGAAAGTTACAAGGTCTTAAAGAAAACTGGTAACGATACCATTGTGTTAAGTGATCAGGGGATACAATACCGTAGACCAGTCGCACACCTCAGGAAGATCGAGAATATGCAACAACTTTCAAACAATAATGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGATCGGGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACTATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGGAGACTCATATGAA]
[+] EMBL BX625258 [CGTCCCTAAAGACAGATCCATGCTGGAGTAGAAATGAAAATGAAAGAGACTCTGACGCAATTCGTAAAAATGAAAGGAAAAATTTATGCCAATAAGAGGCGCGGGTCAAAAATCTCAAACATATCAGAGGGCGACAAAGTTAGAATTCGGAATTGTGATTCAGGTAAACTAGAATCGAAATGGTCAAAGGAAAGTTACAAGGTCTTAAAGAAAACTGGTAACGATACCATTGTGTTAAGTGATCAGGGGATACAATACCGTAGACCAGTCGCACACCTCAGGAAGATCGAGAATATGCAACAACTTTCAAACAATAATGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGATCGGGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACTATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGGAGACTCATATGAA]
[+] EMBL BX614550 [ AAAACGGGGAACGATACCATTGGGGTAAGTGATCAGGGGAAACAATACCGTAGACCAGTCGCACACCTCAGGAAGAACGAGAATATGCAACAACTTTCAAACAATAAGGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGAACGGGAAAGTGTTCAACGTGTGAATCGCGAAGAATTGTACTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7165#0 ------------------------------------------------------------
consensus_7165#1 ------------------------------------------------------------
consensus_7165#2 CGTCCCTAAAGACAGATCCATGCTGGAGTAGAAATGAAAATGAAAGAGACTCTGACGCAA 60
consensus_7165#0 ----------------------------CCGGTTTTTGCCGTGATACACTAAGTTTCTTT 32
consensus_7165#1 --------AATGCGGAGATCACTCCGGTTGTGTTTTTGCCGTGATACACAAAGTTTCTTT 52
consensus_7165#2 TTCGTAAAAATGAAAGGAAAAATTTATGCCAATAAGAGGCGCGGGTCAAAAATCTCAAAC 120
* * ** * ** ** *
consensus_7165#0 TTTT-ACAG--TGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGG--CTGAAG 87
consensus_7165#1 TTTTTACAG--TGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGG--CTGAAG 108
consensus_7165#2 ATATCAGAGGGCGACAAAGTTAGAATTCGGAATTGTGATTCAGGTAAACTAGAATCGAAA 180
* * * ** * *** * *** * * * ** * * * ***
consensus_7165#0 TGGCTACTCTCATGTT-GATACTCATAGAAGAGGAAGACGAAGA----ACTGCAGCAAGA 142
consensus_7165#1 TGGCTACTCTCATGTT-CATACTCATAGAAGAGGAAGACGAAGA----ACTGCAGCAAGA 163
consensus_7165#2 TGGTCAAAGGAAAGTTACAAGGTCTTAAAGAAAACTGGTAACGATACCATTGTGTTAAGT 240
*** * * *** * ** ** * * * * ** * ** ***
consensus_7165#0 GG--AAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGA--GGGAA------- 191
consensus_7165#1 GG--AAAATGCACGGCGCTGCTGGATAACCGATCTATTTCTGGAGA--GGGAA------- 212
consensus_7165#2 GATCAGGGGATACAATACCGTAGACCAGTCGCACACCTCAGGAAGATCGAGAATATGCAA 300
* * ** * * * ** * * * *** * ***
consensus_7165#0 -AGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCA-AACAACCGGCTAG 249
consensus_7165#1 -AGCGTTTGG------CTGTTTAGGGCGATAGATGGCGAAGGACCA-AACAACCGGCTAG 264
consensus_7165#2 CAACTTTCAAACAATAATGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGATCGG 360
* * ** ** *** * * ** * * *** * *
consensus_7165#0 -AAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCA 308
consensus_7165#1 -AAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCA 323
consensus_7165#2 GAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCA 420
***********************************************************
consensus_7165#0 AAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGC 368
consensus_7165#1 AAAAATGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGC 383
consensus_7165#2 AAAATTGAGCGACAAGATACAACTATGCGACCTTCGATCTGCCCGAAGCAACGATTATGC 480
**** ****************** **** *******************************
consensus_7165#0 ATCGGGCTTCGCTTTTTAGCTTCGGG-AGACTCATATGAATCTCTTGCTTTTTTGTTTAG 427
consensus_7165#1 ATCGGGCTTCGCTTTTTAGCTTCGGA-AGACTCATATGAATCTCTTGCTTTTTTGTTTAG 442
consensus_7165#2 ATCGGGCTTCGCTTTTTAGCTTCGGGGAGACTCATATGAA-------------------- 520
************************* *************
consensus_7165#0 GGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATGA 487
consensus_7165#1 GGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTNTGTACACACATAATAAATGA 502
consensus_7165#2 ------------------------------------------------------------
consensus_7165#0 ATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTA 547
consensus_7165#1 ATNGAAGGAATACGTTAAGGTATNATNTCACTAAAAAAAAAA------------------ 544
consensus_7165#2 ------------------------------------------------------------
consensus_7165#0 ATACTCTCCTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAAT 607
consensus_7165#1 ------------------------------------------------------------
consensus_7165#2 ------------------------------------------------------------
consensus_7165#0 TTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTATAGTCTTTTTTTCTANAACTAA 667
consensus_7165#1 ------------------------------------------------------------
consensus_7165#2 ------------------------------------------------------------
consensus_7165#0 TATATTGCCTAAAAACTGCTGTTATACTATTTAACAAATGAACTTGTTGCAATAAACAAC 727
consensus_7165#1 ------------------------------------------------------------
consensus_7165#2 ------------------------------------------------------------
consensus_7165#0 TATTCAGGTCATGTCACTAACGTAACCACAGGGTGAGAATATTTCTTTTG 777
consensus_7165#1 --------------------------------------------------
consensus_7165#2 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||