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Anopheles gambiae
cluster # 7170 cluster # 7170       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7170#0 length = 1020 sequences # 5  
consensus_7170#1 length = 505 sequences # 1  

consensusID : consensus_7170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1020
fasta sequence
                              [CGTTATCGCCATTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC-GCCGATCTGGAACGGAT-GGGCCGGGCGCGGAT-GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCATGCGAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CNS09D8Z             [CGTTATCGCCATTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC GCCGATCTGGAACGGAT GGGCCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAA                                                                                                         ]
[+] EMBL BM650837             [                      ccGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGCACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTAGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGACGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF541692             [                                                                                                       CACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGACGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACNGCGNNAGCTCAAAGCAACACTGTACANCCGATCTGGAACGGATGGGGCCGGGCGCGGATGGGAGATGCTCANCTTTATGACCGCAGCAAGACGCTGAACTGGTCAAC GGTCAGCGAACGAGTCGTNCGCATAAAATGTTGCANAACGGTCGTAAAAG                                                                                                                                                                                                                                                  ]
[-] EMBL CNS09D90             [                                                                                                                 TGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGTTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT CTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCCACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC GCCGATCTGGAACGGAT GGGCCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCATGCGAAAAA                 ]
[+] EMBL CNS09KL5             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAACAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_7170#0 CGTTATCGCCATTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCA TTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCG TTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTG TCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATT GTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAG GTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGT GCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCC TACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCA ATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGAC TGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGG GACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTACGCCGATCTGGAA CGGATGGGCCGGGCGCGGATGGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACT GGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCT TTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAAC AGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGAT CAAATGCTGAGTAAATTCTCACAAAAGTTGCATATTGATTGCTCGCCACTCGACTCGATA CGTGGGCTGCAATAAAACAAATACTGTAGATGCATGCGAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_7170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGCAATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT]

[+] EMBL AGA302661            [GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGCAATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT]


>consensus_7170#1 GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGC AATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTT CTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTC TCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGG ACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGT GTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGG ACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTAT CGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAAT CGAACGGTACGCAACTTTATCGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7170#0      ------------------------------------------------------------
consensus_7170#1      GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGC 60
                                                                                  

consensus_7170#0      ------------------------CGTTA---TCGCCATTCGCTAGTTAAAGATCGCGTT 33
consensus_7170#1      AATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTT 120
                                              ** **       * **********************

consensus_7170#0      CTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTC 93
consensus_7170#1      CTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTC 180
                      ******************************* ****************************

consensus_7170#0      TCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGG 153
consensus_7170#1      TCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGG 240
                      ************************************************************

consensus_7170#0      ACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGT 213
consensus_7170#1      ACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGT 300
                      ********************************************************* **

consensus_7170#0      GTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGG 273
consensus_7170#1      GTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGG 360
                      ***************************************************** ******

consensus_7170#0      ACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTAT 333
consensus_7170#1      ACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTAT 420
                      ******************************** ***************************

consensus_7170#0      CGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAAT 393
consensus_7170#1      CGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAAT 480
                      ************************************************************

consensus_7170#0      CGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCG 453
consensus_7170#1      CGAACGGTACGCAACTTTATCGCAT----------------------------------- 505
                      *************************                                   

consensus_7170#0      ACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCC 513
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      GGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAA 573
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      CACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTC 633
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      AAAGCAACACTGTACGCCGATCTGGAACGGATGGGCCGGGCGCGGATGGAGATGCTCAAC 693
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      TTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATA 753
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      AAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGT 813
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      GGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGC 873
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      CACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCAT 933
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      ATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGC 993
consensus_7170#1      ------------------------------------------------------------
                                                                                  

consensus_7170#0      ATGCGAAAAAAAAAAAAAAAAAAAAAA 1020
consensus_7170#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)