These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1020 fasta sequence [CGTTATCGCCATTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC-GCCGATCTGGAACGGAT-GGGCCGGGCGCGGAT-GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCATGCGAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CNS09D8Z [CGTTATCGCCATTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC GCCGATCTGGAACGGAT GGGCCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAA ] [+] EMBL BM650837 [ ccGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGCACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTAGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGACGAA ] [+] EMBL CF541692 [ CACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGACGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACNGCGNNAGCTCAAAGCAACACTGTACANCCGATCTGGAACGGATGGGGCCGGGCGCGGATGGGAGATGCTCANCTTTATGACCGCAGCAAGACGCTGAACTGGTCAAC GGTCAGCGAACGAGTCGTNCGCATAAAATGTTGCANAACGGTCGTAAAAG ] [-] EMBL CNS09D90 [ TGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGTTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT CTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCCACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC GCCGATCTGGAACGGAT GGGCCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCATGCGAAAAA ] [+] EMBL CNS09KL5 [ CCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAACAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGCAATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT] [+] EMBL AGA302661 [GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGCAATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7170#0 ------------------------------------------------------------ consensus_7170#1 GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGC 60 consensus_7170#0 ------------------------CGTTA---TCGCCATTCGCTAGTTAAAGATCGCGTT 33 consensus_7170#1 AATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTT 120 ** ** * ********************** consensus_7170#0 CTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTC 93 consensus_7170#1 CTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTC 180 ******************************* **************************** consensus_7170#0 TCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGG 153 consensus_7170#1 TCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGG 240 ************************************************************ consensus_7170#0 ACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGT 213 consensus_7170#1 ACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGT 300 ********************************************************* ** consensus_7170#0 GTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGG 273 consensus_7170#1 GTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGG 360 ***************************************************** ****** consensus_7170#0 ACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTAT 333 consensus_7170#1 ACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTAT 420 ******************************** *************************** consensus_7170#0 CGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAAT 393 consensus_7170#1 CGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAAT 480 ************************************************************ consensus_7170#0 CGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCG 453 consensus_7170#1 CGAACGGTACGCAACTTTATCGCAT----------------------------------- 505 ************************* consensus_7170#0 ACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCC 513 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 GGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAA 573 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 CACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTC 633 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 AAAGCAACACTGTACGCCGATCTGGAACGGATGGGCCGGGCGCGGATGGAGATGCTCAAC 693 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 TTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATA 753 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 AAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGT 813 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 GGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGC 873 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 CACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCAT 933 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 ATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGC 993 consensus_7170#1 ------------------------------------------------------------ consensus_7170#0 ATGCGAAAAAAAAAAAAAAAAAAAAAA 1020 consensus_7170#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||