These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [CCGGTGACGACGTGCATCTTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGGTGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAATCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAAAGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAAGGACAGCCACAGCACCGACGACCCGGACACGACGGGTTGTGGACGGTGCGGTAGCAAAGCACGAGGCCTCGCAGCTGCAGGCGGCGGCGGCCCAGCAGCACGACACCGATCAGCAACCAGGTGATACCCGGTCCCCAGTCCGCGTCGC] [+] EMBL BM628100 [CCGGTGACGACGTGCATCTTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGGTGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAATCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAAAGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAAGGACAGCCACAGCACCGACGACCCGGACACGACGGGTTGTGGACGGTGCGGTAGCAAAGCACGAGGCCTCGCAGCTGCAGGCGGCGGC ] [+] EMBL BM575067 [ ccgGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCCACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGGTGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAATCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAAAGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAAGGACAGCCACAGCACCGACGACCCGGACACGAC GGTTGTGGACGGTGCGGTAGCAAAGCACGAGGCCTCGCAGCTGCAGGCGGCGGCGGCCCAGCAGCACGACACCGATCAGCAACCAGGTGATACCCGGTCCCCAGTCCGCGTCGC] consensusID : consensus_7173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCGTGAAAAGAGTATCGTTCGGCTCGTCCAAAGGTTCGATGGTGGAAACGCTGGTGTTCGAGACGCCCACCCCCCTGCCAGAGCACGCCGAGCGGGAGTTCTTTCAGTCGCCGGCCGTGCTGGCCGGCGCCGGCCACACAACCGTGTACAGCGGGGGCAGCGGCCCGCCCGGCACCACCCTGGTGCACCATCACTATCCGGCCCCGGGGCTGGCGCACCATCCGCATCACCTGCCGCACCATCACCATCCGTACCAGCCGCAGTATTCCGGGGGCTACCACCATCCGCTGGACGGTGGCCCGGCCACGGGAGCCTCACACGATGACAGCGGCATCGAGCTGCAGGAAGAAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGATCACCGGGATCCCGA] [+] EMBL BM655003 [CCGTGAAAAGAGTATCGTTCGGCTCGTCCAAAGGTTCGATGGTGGAAACGCTGGTGTTCGAGACGCCCACCCCCCTGCCAGAGCACGCCGAGCGGGAGTTCTTTCAGTCGCCGGCCGTGCTGGCCGGCGCCGGCCACACAACCGTGTACAGCGGGGGCAGCGGCCCGCCCGGCACCACCCTGGTGCACCATCACTATCCGGCCCCGGGGCTGGCGCACCATCCGCATCACCTGCCGCACCATCACCATCCGTACCAGCCGCAGTATTCCGGGGGCTACCACCATCCGCTGGACGGTGGCCCGGCCACGGGAGCCTCACACGATGACAGCGGCATCGAGCTGCAGGAAGAAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGATCACCGGGATCCCGA] consensusID : consensus_7173#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [CTTGAATATTTTAAGCGAACGGTCCTCGCTGTGGTGTTTCTTGTTTTTTTTCCGTGGCACAGCGCTCTATACTGTTTCTTTCAAGGGTAGAGGGGTGGGAGGGAGATAGCAACATTTGGCAGAGTAACAGGTTTCTCGTAGTCGGAGATGGAGTTGGAACGGCTAGGCGCTTTTTAAATCAAATGTGTGAATAGGCTCCATTTCAGCTCCAAACGCCTCCTGCAAACTGTTGCTTGTGCCCTCACTTACGAGACAAGCTTGGGAGTGGTACTTACAGGCAGGATTAAAGTGTGTGTGTGTGTGTTTGCACGCTCGGATGGAACCGTCAATGTGAGTCACAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGGCAAAGTTGATTCCATTTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGGCGCGCTCAA] [+] EMBL BM608684 [CTTGAATATTTTAAGCGAACGGTCCTCGCTGTGGTGTTTCTTGTTTTTTTTCCGTGGCACAGCGCTCTATACTGTTTCTTTCAAGGGTAGAGGGGTGGGAGGGAGATAGCAACATTTGGCAGAGTAACAGGTTTCTCGTAGTCGGAGATGGAGTTGGAACGGCTAGGCGCTTTTTAAATCAAATGTGTGAATAGGCTCCATTTCAGCTCCAAACGCCTCCTGCAAACTGTTGCTTGTGCCCTCACTTACGAGACAAGCTTGGGAGTGGTACTTACAGGCAGGATTAAAGTGTGTGTGTGTGTGTTTGCACGCTCGGATGGAACCGTCAATGTGAGTCACAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGGCAAAGTTGATTCCATTTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGGCGCGCTCAA] consensusID : consensus_7173#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [CCAGAAATCGGCACGAGGNTGNAATATCGTGACGACGTTGCATCTCTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAAGTCAATCAGTCCTGCCAGGAGTTCGCTGCACCGTGTACCGGTGGGCAAAGTTTTGAGTCCAGGTGTTCGGGTAACGGACGGCGGCAGCGGCCGGATGACGGGCAGGGGCGTATTGATAACAA] [+] EMBL BX468744 [CCAGAAATCGGCACGAGGNTGNAATATCGTGACGACGTTGCATCTCTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAAGTCAATCAGTCCTGCCAGGAGTTCGCTGCACCGTGTACCGGTGGGCAAAGTTTTGAGTCCAGGTGTTCGGGTAACGGACGGCGGCAGCGGCCGGATGACGGGCAGGGGCGTATTGATAACAA] consensusID : consensus_7173#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [GCAGAATCGGCCGAGGAATNTCGTGACGACGTGCATCTTTGGTCCTGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCTGTGTATCGGTTCTTCCAGATGCAGCAAACCGGCAAAATGTCAAANTTTCAAGTCTCACGGGCCCGGNGAAAGTTNN] [+] EMBL BX469684 [GCAGAATCGGCCGAGGAATNTCGTGACGACGTGCATCTTTGGTCCTGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCTGTGTATCGGTTCTTCCAGATGCAGCAAACCGGCAAAATGTCAAANTTTCAAGTCTCACGGGCCCGGNGAAAGTTNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7173#0 ------------------------------------------------------------ consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 CCGTGAAAAGAGTATCGTTCGGCTCGTCCAAAGGTTCGATGGTGGAAACGCTGGTGTTCG 60 consensus_7173#2 --------CTTGAATATTTTAAGCGAACGGTCCTCGCTGTGGTGTTTCTTGTTTTTTTTC 52 consensus_7173#0 ------------------------------------------------------------ consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 AGACGCCCACCCCCCTGCCAGAGCACGCCGAGCGGGAGTTCTTTCAGTCGCCGGCCGTGC 120 consensus_7173#2 CGTGGCACAGCGCTCTATACTGTTTCTTTCAAGGGTAGAGGGGTGGGAGGGAGATAGCAA 112 consensus_7173#0 ------------------------------------------------------------ consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 TGGCCGGCGCCGGCCACACAACCGTGTACAGCGGGGGCAGCGGCCCGCCCGGCACCACCC 180 consensus_7173#2 CATTTGGCAG-AGTAACAGGTTTCTCGTAGTCGGAGATGGAGTTGGAACGGCTAGGCGCT 171 consensus_7173#0 ------------------------------------------------------------ consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 TGGTGCACCATCACTATCCGGCCCCGGGGCTGGCGCACCATCCGCATCACCTGCCGCACC 240 consensus_7173#2 TTTTAAATCAAATGTGTGAATAGGCTCCATTTCAGCTCCAAACGCCTCCTGCAAACTGTT 231 consensus_7173#0 --------------------------------------------------------CCGG 4 consensus_7173#4 -------------------------------------GCAGAATCGGCCGAGGAATNTCG 23 consensus_7173#3 -------------------------------CCAGAAATCGGCACGAGGNTGNAATATCG 29 consensus_7173#1 ATCACCATCCGTACCAGCCGCAGTATTCCGGGGGCTACCACCATCCGCTGGACGGTGGCC 300 consensus_7173#2 GCTTGTGCCCTCACTTACGAGACAAGCTTGGGAGTGGTACTTACAGGCAGGATTAAAGTG 291 consensus_7173#0 TGACGACGT-GCATCTTTGGTCC-GGTTCCTGTGGCGCTCCTGCGAGGTGAA-CGTAGTA 61 consensus_7173#4 TGACGACGT-GCATCTTTGGTCCTGGTTCCTGTGGCGCTCCTGCGAGGTGAA-CGTAGTA 81 consensus_7173#3 TGACGACGTTGCATCTCTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAA-CGTAGTA 88 consensus_7173#1 CGGCCACG--GGAGCCTCA--CACGATGACAGCGGCA-TCGAGCTGCAGGAA--GAAGTA 353 consensus_7173#2 TGTGTGTGT-GTGTTTGCACGCTCGG-----ATGGAA--CCGTCAATGTGAGTCACAGTA 343 * * * * ** * * ** **** consensus_7173#0 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCG-CAATCAATCAG 117 consensus_7173#4 GAGCGCTCGAAGGTGCTGTGTATCGGTTCTTCCAGATGCAGCAAACCGGCAAAATGTCAA 141 consensus_7173#3 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCGCAAGTCAATCAG 145 consensus_7173#1 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCG-CAATCAATCAG 409 consensus_7173#2 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCG-CAATCAATCAG 399 **************** ******** ********** *********** * *** consensus_7173#0 TCCGCC---GGAGTCGCTGCACCT-GT-ACGGTGGGCAAAGTTTGATCCATTT-CGGTAA 171 consensus_7173#4 ANTTTC---AA----GTCTCACGG-GC-CCGGNG---AAAGTTNN--------------- 174 consensus_7173#3 TCCTGCCAGGAGTTCGCTGCACCGTGTACCGGTGGGCAAAGTTTTGA--GTCC-AGGTGT 202 consensus_7173#1 TCCGCC---GGAGTCGCTGCACCT-GT-ACGGTGGGCAAAGTTTGATCCATTT-CGGTAA 463 consensus_7173#2 TCCGCC---GGAGTCGCTGCACCT-GTACGGTGGGGCAAAGTTGATTCCATTTTCGGTAA 455 * * *** * * * ****** consensus_7173#0 CGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTA 231 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 TCGGGTAACGGACGGCGGCAGCGGCCGGATGACGGGCAGGGGCGTATTGATAACAA---- 258 consensus_7173#1 CGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTA 523 consensus_7173#2 CGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTA 515 consensus_7173#0 CATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCA 291 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 CATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCA 583 consensus_7173#2 CATCACCTCGGGCGCGCTCAA--------------------------------------- 536 consensus_7173#0 GCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGG 351 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 GCAGCACGCACACTTTCATCCGGATCACCGGGATCCCGA--------------------- 622 consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 TGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAA 411 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 ------------------------------------------------------------ consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 TCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAA 471 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 ------------------------------------------------------------ consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 AGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAA 531 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 ------------------------------------------------------------ consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 GGACAGCCACAGCACCGACGACCCGGACACGACGGGTTGTGGACGGTGCGGTAGCAAAGC 591 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 ------------------------------------------------------------ consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 ACGAGGCCTCGCAGCTGCAGGCGGCGGCGGCCCAGCAGCACGACACCGATCAGCAACCAG 651 consensus_7173#4 ------------------------------------------------------------ consensus_7173#3 ------------------------------------------------------------ consensus_7173#1 ------------------------------------------------------------ consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 GTGATACCCGGTCCCCAGTCCGCGTCGC 679 consensus_7173#4 ---------------------------- consensus_7173#3 ---------------------------- consensus_7173#1 ---------------------------- consensus_7173#2 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||