These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1675 fasta sequence [CTACAGCTTCTCTCCTTTTTTGGCCCAATGGAATTTCATATTGTGCTTGCGGAGGAGCTAGCGTCGCTACAACGGAAGTCACAGGTGGCGCATTCGAACGGTTTCTCGCCCGTATGCAACCGCACATGCGTTATTAAGGTCGATTTTCTTTTGAAGCTCTTGGCGCAATATTTGCACGAGAAATTTTTCGCCTCACTGTGCACCACCT-CCATGTGCCGATCGTACGAGCTTTTGTACGTGAAG-CCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGATCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGACTTTCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGTCCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGATGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGATCCTTTCGCCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGGAATTTTTGGAGTGTATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGTTTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGGTTTGTTTGCTCTTCGAGCAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTTTTCTACGCTTCGGCGACTTGTGCTTTAGCAGCTGTTGCAAAAAGGTGAAGCTCTGATTACAGCCACCACACTGATACTCTTCACAGGTTTCCCGATGCTGCTCTAAGATC-GTCTGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAAGCAAGGAGCCATTCCAATCGTTGGCGCTGTACAGCGTCAACCAGCACTTGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGTTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACCGGAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACTTTCTGCAGACCGG] [+] EMBL CNS09M7I [CTACAGCTTCTCTCCTTTTTTGGCCCAATGGAATTTCATATTGTGCTTGCGGAGGAGCTAGCGTCGCTACAACGGAAGTCACAGGTGGCGCATTCGAACGGTTTCTCGCCCGTATGCAACCGCACATGCGTTATTAAGGTCGATTTTCTTTTGAAGCTCTTGGCGCAATATTTGCACGAGAAATTTTTCGCCTCACTGTGCACCACCT CCATGTGCCGATCGTACGAGCTTTTGTACGTGAAG CCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGATCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGACTTTCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGTCCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGATGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGATCCTTTCGCCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGGAATTTTTGGAGTGTATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGTTTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGGTTTGTTTGCTCTTCGAGCAGATTTTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTa ] [-] EMBL BM589752 [ GCGCAATATTTGCACGAGAAATTTTTCGCCTCACTGTGCACCACCTCCCATGTGCCGATCGTACGAGCTTTTATACGTGAAGCCCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGATCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGACTTCCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGTCCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGATGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGATCCTTTCGTCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGGAATTTTTGGAGTGAATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGTTTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGATTTGTTTGATCTTCGAGTAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTTTTCTACGCTTCGG ] [-] EMBL CNS09M7H [ TGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCG TGCACACTGCACAACTCAATGGGTTTGTTTTCTC TCGAGCAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTTTTCTACGCTTACACGACTTGTGCTTTAGCAGCTGTTGCAAAAAGGTGAAGCTCTGATTACAGCCACCACACTGATACTCTTCACAGGTTTCCCGATGCTGCTCTAAGATC GTCTGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAAGCAAGGAGCCATTCCAATCGTTGGCGCTGTACAGCGTCAACCAGCACTTGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGTTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTTGTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGG ] [-] EMBL BM602946 [ GCTCTGATTACAGCCACCACACTGATACTCTTCACAGCTTTCCCGATGCTGCTCTAA ATCGGTCTGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAGGCAAGGAGCCATTCCAATCGTTGTCGCTGTATAGCGTCAACCAACACTTGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGGTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACCGG ] [-] EMBL BM617760 [ TCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGTTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCTCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTTGTTGGGAAAATTTCCGCCATCGTAAGATAACACAAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACTTTCTGCAGACCGG] consensusID : consensus_7178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [GTTGTCGGCTGTATAGCGTCAACCAACACTTGGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGGTCGTCCACTTCGTACAAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACACAAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACCCACGCGTCCGCCCACGCGTCCGCGG] [-] EMBL BM654126 [GTTGTCGGCTGTATAGCGTCAACCAACACTTGGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGGTCGTCCACTTCGTACAAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACACAAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACCCACGCGTCCGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7178#0 CTACAGCTTCTCTCCTTTTTTGGCCCAATGGAATTTCATATTGTGCTTGCGGAGGAGCTA 60 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 GCGTCGCTACAACGGAAGTCACAGGTGGCGCATTCGAACGGTTTCTCGCCCGTATGCAAC 120 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 CGCACATGCGTTATTAAGGTCGATTTTCTTTTGAAGCTCTTGGCGCAATATTTGCACGAG 180 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 AAATTTTTCGCCTCACTGTGCACCACCTCCATGTGCCGATCGTACGAGCTTTTGTACGTG 240 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 AAGCCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGA 300 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGAC 360 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TTTCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGT 420 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 CCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGA 480 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGAT 540 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 CCTTTCGCCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGG 600 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 AATTTTTGGAGTGTATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGT 660 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATG 720 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGG 780 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TTTGTTTGCTCTTCGAGCAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGA 840 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TGCATTTTTCTACGCTTCGGCGACTTGTGCTTTAGCAGCTGTTGCAAAAAGGTGAAGCTC 900 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TGATTACAGCCACCACACTGATACTCTTCACAGGTTTCCCGATGCTGCTCTAAGATCGTC 960 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAAGCAAGGAGCCA 1020 consensus_7178#1 ------------------------------------------------------------ consensus_7178#0 TTCCAATCGTTGGCGCTGTACAGCGTCAACCAGCACTTG-CCACATCGTGAGGATAAGGT 1079 consensus_7178#1 -----GTTGTCGG--CTGTATAGCGTCAACCAACACTTGGCCACATCGTGAGGATAAGGT 53 * ** ** ***** *********** ****** ******************** consensus_7178#0 ATCATCTTCATGGGG-CAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATG 1138 consensus_7178#1 ATCATCTTCATGGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATG 113 *************** ************************ ************* **** consensus_7178#0 GTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGT 1198 consensus_7178#1 GTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGT 173 ************************************************************ consensus_7178#0 CTTCCAATTGTTCGTCCACTTCGTACAAA-TATTCTTCGTCGCTATATTCGATTTTCTCA 1257 consensus_7178#1 CTTCCAATTGGTCGTCCACTTCGTACAAAATATTCTTCGTCGCTATATTCGATTTTCTCA 233 ********** ****************** ****************************** consensus_7178#0 ATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCA 1317 consensus_7178#1 ATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCA 293 ***************************** ***** ************************ consensus_7178#0 TCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTG 1377 consensus_7178#1 TCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTG 353 ************************************************************ consensus_7178#0 TTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCC 1437 consensus_7178#1 TTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCC 413 ************************************************************ consensus_7178#0 ACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACT 1497 consensus_7178#1 ACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACT 473 ************************************************************ consensus_7178#0 TTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGC 1557 consensus_7178#1 TTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGC 533 ************************************************************ consensus_7178#0 GCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACCGGAACTC 1617 consensus_7178#1 GCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACACAAACTC 593 **************************************************** ***** consensus_7178#0 AAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACTT-----TCTGCAGAC 1672 consensus_7178#1 AAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACCCACGCGTCCGCCCAC 653 ******************************************** ** ** ** consensus_7178#0 CGG------- 1675 consensus_7178#1 GCGTCCGCGG 663 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||