These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1222 fasta sequence [CCGCGGACGCGTGGGCGCGGGCACGATTATGTCCCTGCGTGAAAGTTAAGAAAGAGGAACAGGTGCGTACTACTTTGACCTCATGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGCCTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGTTTGACAACACCCTGCTATACGTG--AGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGACACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTG-AAAAAAAAAAAAAAGAAAAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAACAGGCTACCCTGCTCTTGAACGAAGCTACCATATGGGAGAAAGTAGTCTGACATAATAAGGTATACTATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATCGGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGCATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGCAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATCATGAAGAGCGATGTAGACTTACAAAGTAGNNTAATTAATATAATCTCCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCCTGCTGAAGCAATTTTTTGTTCTGTAAAACCCAAACCGCAACCAATNCTATTGAAAGTGAGGNTCGGTGGCNAACACNGNAACCCCCGGACCANCANGNTAN] [+] EMBL BM622486 [CCGCGGACGCGTGGGCGCGGGCACGATTATGTCCCTGCGTGAAAGTTAAGAAAGAGGAACAGGTGCGTACTACTTTGACCTCATGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGCCTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGTTTGACAACACCCTGCTATACGTGAAAGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGACACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTG AAAAAAAAAAAAAAGAAAAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAACAGGCTACCCTGCTCTTGAACGAAGCTACCATATGGGAGAAAGTAGTCTGACATAATAAG ] [+] EMBL BX625404 [ ACTACTTTGATNTCCTGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGCCTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGTTTGACAACACCCTGCTATACGTG TGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGACACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTGAAAAAAAAAAAAAAANAAAAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGG ] [+] EMBL BM599721 [ ccgGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAGCAGGCTACCCTGCTCTTGAACGAAGCTACCATAT GGAGAAAGTAGTCTGACATAATAAGGTATACTATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATCGGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGCATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGCAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATCATGAAGAGCGATGTAGACTTACAAAGT ] [+] EMBL CF541749 [ TACTATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATCGGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGG AAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGNNTAATTAATATAATCTCCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCCTGCTGAAGCAATTTTTTGTTCTGTAAAACCCAAACCGCAACCAATNCTATTGAAAGTGAGGNTCGGTGGCNAACACNGNAACCCCCGGACCANCANGNTAN] consensusID : consensus_7186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTTGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAAGCGAAATAAACAAGAAAATTAATAAAACATATATATATACACACTTATATAGATATATATTATCGTACCACGGTGTTTGTACTTGATTTGCAAGGATTTAGGCATTAGATGAGCAAAAATAAGCAAAACAAAAAACACTCCCCAACAACAAGTGTATGTCATTAGGCAGCAGCGAAAAGGTAGGAAGAGTGGCGAAAAATGCCATAGAGTTTACAAAAAAATACATTAACACACGCATACAGTTACACCAGGATCCAGACCCCGAGGAGCGATAGAGAGCACGCACGCAAACCTGGTTTGAAGCAAAAGCAGACAACAACAACAACAACAACCAAAACTGTGATTTGAAAAAAAAGATGCTGTATTAAA] [+] EMBL BX613116 [CAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTTGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAAGCGAAATAAACAAGAAAATTAATAAAACATATATATATACACACTTATATAGATATATATTATCGTACCACGGTGTTTGTACTTGATTTGCAAGGATTTAGGCATTAGATGAGCAAAAATAAGCAAAACAAAAAACACTCCCCAACAACAAGTGTATGTCATTAGGCAGCAGCGAAAAGGTAGGAAGAGTGGCGAAAAATGCCATAGAGTTTACAAAAAAATACATTAACACACGCATACAGTTACACCAGGATCCAGACCCCGAGGAGCGATAGAGAGCACGCACGCAAACCTGGTTTGAAGCAAAAGCAGACAACAACAACAACAACAACCAAAACTGTGATTTGAAAAAAAAGATGCTGTATTAAA] consensusID : consensus_7186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [ACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTGGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAGGCGAAATAAACAAGAAAATTAATAAAACATATATATATATACACACACAAAAAAAAAAAAAAAAAAAA] [+] EMBL AF457563 [ACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTGGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAGGCGAAATAAACAAGAAAATTAATAAAACATATATATATATACACACACAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7186#0 CCGCGGACGCGTGGGCGCGGGCACGATTATGTCCCTGCGTGAAAGTTAAGAAAGAGGAAC 60 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 AGGTGCGTACTACTTTGACCTCATGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGC 120 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 CTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGT 180 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 TTGACAACACCCTGCTATACGTGAGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGA 240 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 CACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTGAAAAAAAAAAAAAAGAA 300 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 AAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTA 360 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 ACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCA 420 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ---------------------------------------------CAAAATAAGCCTTT- 14 consensus_7186#0 TCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCA 480 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ---CGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACA 71 consensus_7186#0 CAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAG 540 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 GAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAA 131 consensus_7186#0 CTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAACAGGCTA 600 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 TTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAA 191 consensus_7186#0 CCCTGCTCTTGAACGAAGCTACCATATGGGAGAAAGTAGTCTGACATAATAAGGTATACT 660 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 CACT---------CAAAACC----TGCTGAAGCAATTTTTGTTCTGTAAAACCAAACGCA 238 consensus_7186#0 ATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATC 720 consensus_7186#2 ------------------------------------------------------------ consensus_7186#1 ACAATCTATGAAGTGAGTCGTGCAAAATG---ACCCGGACACAGTATAACAGATTAGAAA 295 consensus_7186#0 GGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCA 780 consensus_7186#2 ---------------------ACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCA 39 consensus_7186#1 GAGAGAGGAGATATAAAGCAAGACAAACGGACA--AGCGAAATAAACAAGAAAATTAATA 353 * *** **** * * * * * * * consensus_7186#0 GCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCAC-C 839 consensus_7186#2 GCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCAC-C 98 consensus_7186#1 AAACATATATATATACA--CACTTATATAGATATATATTATCGTACCACGGTGTTTGTAC 411 ** ** * *** *** *** * ** * ** *** * * consensus_7186#0 TAGACTCTCCC--ACTTAGGCATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAG 897 consensus_7186#2 TAGACTCTCCC--ACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAG 156 consensus_7186#1 TTGATTTGCAAGGATTTAGGCATTAG-ATGAGCAAAAATAAG--CAAAACAAA-----AA 463 * ** * * * ***** **** ** * * * * ** ** * * * consensus_7186#0 GCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGA 957 consensus_7186#2 GCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGA 216 consensus_7186#1 ACACTCCCCAACAACAAGTG---TATGTCATTAGGCAGCAGCGAAAAGGTA-----GGAA 515 ** ** * *** ** * * ** * * * * * ** ** ** * consensus_7186#0 GAATAAGCGGGCAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATCATG 1017 consensus_7186#2 GAATAAGCGGG-AAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATG 275 consensus_7186#1 GAGTG-GCG---AAAAATGCCATAGAGTTT----ACAAAAAAATACATTAACACA-CGCA 566 ** * *** ** * * * **** ** * ** ** * ** * consensus_7186#0 AAGAGCGATGTAGACTTACAAAGTAGNNTAATTAATATA-ATCTCCGTTACTAAATGGGT 1076 consensus_7186#2 AAGAGCGATGTAGACTTACAAAGTAGTT-AATTAATATA-ATCTC-GTTACTAAATGGGT 332 consensus_7186#1 TACAGTTACACCAGGATCCAGACCCCGAGGAGCGATAGAGAGCACGCACGCAAACCTGGT 626 * ** * * ** * * *** * * * * * ** *** consensus_7186#0 TCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCCTG--CTGAAGCAATT 1134 consensus_7186#2 TCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACC-TG--CTGAAGCAATT 389 consensus_7186#1 TTGAAGCAAAAGCAGACAACAACAAC--AACAACAACCAAAACTGTGATTTGAAAAAAAA 684 * ** * * **** * * * ** **** ****** ** **** ** consensus_7186#0 TTTTGTTCTGTAAAACCCAAACCGCAACCAATNCTATTGAAAGTGAGGNTCGGTGGCNAA 1194 consensus_7186#2 TTG-GTTCTGTAAAACCAAA--CGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCG 446 consensus_7186#1 GAT-GCTGTATTAAA--------------------------------------------- 698 * * * * *** consensus_7186#0 CACNGNAACCCCCGGACCANCANGNTAN-------------------------------- 1222 consensus_7186#2 GACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAGGCG 506 consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 ------------------------------------------------------------ consensus_7186#2 AAATAAACAAGAAAATTAATAAAACATATATATATATACACACACAAAAAAAAAAAAAAA 566 consensus_7186#1 ------------------------------------------------------------ consensus_7186#0 ----- consensus_7186#2 AAAAA 571 consensus_7186#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||