These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7189#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1320 fasta sequence [CCGCGCTCAATGGCAACGTGATCGTGCTCGGCGCGGGCGACACTGCATTTGATTGTGCGACGTCGGCGCTGCGCTGCGGTGCCCGCAAGGTGTTCGTCGTGTTCCGGAAGGGCAACAACAACATACGCGCCGTGCCGGAGGAGGTCGAGCTGGCGCGGGAGGAGCGCTGCGAGTTCATACCGTTCATGGCGCCGCGGGAGGTGATTGTGCGGGCGGGGCGCATTGCCGCGATGGAATTCTACCGGACCGAGCAGGACGAGACAGGAAACTGGGTGGAGGACCAGGATCAGATCACACGCCTGAAGGCAAACTACATCATTTCCGCGTTCGGGTCCGGGCTGTACGATGCTGACATCATTAGCGCACTGGACGGGTTAAAGATGAACCGCTGGGGACTGCCGGAGGTAGACCCGAAAACCCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAAACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATTTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGAC] [+] EMBL BM589342 [CCGCGCTCAATGGCAACGTGATCGTGCTCGGCGCGGGCGACACTGCATTTGATTGTGCGACGTCGGCGCTGCGCTGCGGTGCCCGCAAGGTGTTCGTCGTGTTCCGGAAGGGCAACAACAACATACGCGCCGTGCCGGAGGAGGTCGAGCTGGCGCGGGAGGAGCGCTGCGAGTTCATACCGTTCATGGCGCCGCGGGAGGTGATTGTGCGGGCGGGGCGCATTGCCGCGATGGAATTCTACCGGACCGAGCAGGACGAGACAGGAAACTGGGTGGAGGACCAGGATCAGATCACACGCCTGAAGGCAAACTACATCATTTCCGCGTTCGGGTCCGGGCTGTACGATGCTGACATCATTAGCGCACTGGACGGGTTAAAGATGAACCGCTGGGGACTGCCGGAGGTAGACCCGAAAACCCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAAACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATTTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTT ] [+] EMBL BM600852 [ ccgCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAAACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATCTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGG ] [+] EMBL BX607776 [ TGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATTTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGATCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCC ] [+] EMBL BM654609 [ CAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTGCAATATTTCGC ] [+] EMBL BX612223 [ CGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGATCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGAC] consensusID : consensus_7189#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 983 fasta sequence [CAGAATCGGCACGTAGGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTGCAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGACCGCAGGCCATGCGGGCCATCTCGCTGATCGCGAACAAGCTACCCGGCTTCCCGATCTGCGGCATCGGCGGCATCGACTCGGCCGAGGTCGCGCTGCAGTTCATCCAGTGCGGTGCGCCGATCCTGCAGATCTGCTCCTCCGTGCAGAACCAGGACTTTACCGTCATCGAGGATTACATACTGGGACTGAAGGCGCTGCTCTATCTGCGCGCGAACCCGCCCCGGAAGCACTGCCCTGGGATGGCCAAGGTCGCCACCAGCGGGCCNAAGCTGCAGAAGGGGCAAAACCGGTCGCTCCGTTGCAGGGGCGAGGACGGGCAAGCCCGCGTGCTTGCACTTTCGGGGAGGTACAAGAAGGCACAGCGNGAGGAGAAGCTTGGCCAAATTGTGGCCTTCCANGCGACGGGTCCCACNTGTTGGGGAACCCGGNTTTNGCGGGNCGAAAGCACCGGGCACNAATGNGGCAANCGCAGCNGGTAAGGANACCAGAGTTCTGGGCANNANCCAGGGNATGATTTACCCGAGNNTAAGNGAATNTCTCTGGGCGGGGANATTGCCCGGATCGGGATTCAAAGGTGG] [+] EMBL BX467590 [CAGAATCGGCACGTAGGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTGCAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGACCGCAGGCCATGCGGGCCATCTCGCTGATCGCGAACAAGCTACCCGGCTTCCCGATCTGCGGCATCGGCGGCATCGACTCGGCCGAGGTCGCGCTGCAGTTCATCCAGTGCGGTGCGCCGATCCTGCAGATCTGCTCCTCCGTGCAGAACCAGGACTTTACCGTCATCGAGGATTACATACTGGGACTGAAGGCGCTGCTCTATCTGCGCGCGAACCCGCCCCGGAAGCACTGCCCTGGGATGGCCAAGGTCGCCACCAGCGGGCCNAAGCTGCAGAAGGGGCAAAACCGGTCGCTCCGTTGCAGGGGCGAGGACGGGCAAGCCCGCGTGCTTGCACTTTCGGGGAGGTACAAGAAGGCACAGCGNGAGGAGAAGCTTGGCCAAATTGTGGCCTTCCANGCGACGGGTCCCACNTGTTGGGGAACCCGGNTTTNGCGGGNCGAAAGCACCGGGCACNAATGNGGCAANCGCAGCNGGTAAGGANACCAGAGTTCTGGGCANNANCCAGGGNATGATTTACCCGAGNNTAAGNGAATNTCTCTGGGCGGGGANATTGCCCGGATCGGGATTCAAAGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7189#0 CCGCGCTCAATGGCAACGTGATCGTGCTCGGCGCGGGCGACACTGCATTTGATTGTGCGA 60 consensus_7189#1 ------------------------------------------------------------ consensus_7189#0 CGTCGGCGCTGCGCTGCGGTGCCCGCAAGGTGTTCGTCGTGTTCCGGAAGGGCAACAACA 120 consensus_7189#1 ------------------------------------------------------------ consensus_7189#0 ACATACGCGCCGTGCCGGAGGAGGTCGAGCTGGCGCGGGAGGAGCGCTGCGAGTTCATAC 180 consensus_7189#1 ------------------------CAGAATCGGCACGT-AGGTGCACGTACAG--CGAGC 33 ** *** ** *** ** * ** * * consensus_7189#0 CGTTCATGGCGCCGCGGGAGGTGATTGTGCGGGCGGGGCGCATTGCCGCGATGGAATTCT 240 consensus_7189#1 CGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCA 93 ** * ** ** ** * * * * **** * * * * * ** ** consensus_7189#0 ACCGGACCGAGCAGGACGAGACAGG-AAACTGGGTGGAGGACCAGGATCAGATCACACGC 299 consensus_7189#1 ACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCA-AGAC 152 *** * ** * * *** ** ** * *** **** * * * *** * * consensus_7189#0 CTGAAGGCAAACTACATCATTTCCGCGTTCGG-GTCCGG-GCTGTACG-ATGCTGACATC 356 consensus_7189#1 CCCGAGCTGGTGTGCAATATTTC-GCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTT 211 * ** * ** ***** *** * ** * *** ** ** ** ** * * * consensus_7189#0 ATTAGCGCACTGGACGGGTTAAAGATGAACCGCTGGGGACTGCCGGAGGTAGACCCGAAA 416 consensus_7189#1 CGTGAAGCTCACGCCCAATATTACCGACATCG-TGTCGATCGC-GCAGGCGGCCAAGCGC 269 * ** * * * * * * ** ** ** ** * *** * * * consensus_7189#0 ACCCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAA 476 consensus_7189#1 GGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGT-CGCT-CCGGG 327 ** * * * ** * ** ** * * * * *** * *** *** consensus_7189#0 ACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTG-GTAC-ATGCACTGCTATT 534 consensus_7189#1 CGGACGGC--AGCCCGTGGCCGGCCGTC-GGTGCCGACCGGCGCACCACGTACGGTGGTG 384 ***** * * *** ** * * * * ** ** * * ** * * ** * * consensus_7189#0 TGCAGGGCATC-CCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGAC 593 consensus_7189#1 TGTCGGGCAACGCCACCAGACCGCAGGCC-ATGCGGGCCATCTCGCTGATCGCGAACAAG 443 ** ***** * ** * *** ** ** ** * ** * * * ** ** * * consensus_7189#0 AAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCG 653 consensus_7189#1 CTACCCGGCTTCCCGATC------TGCGGCATCGGCGGCATCGACTCGGCCGAGGTCGCG 497 ** * * ** * ****** * * * * ** ** * ***** consensus_7189#0 T--CTGCCCCTCCGACCACCAGCACCGCCATGATACGGC-GCGCGTTCGAGCAGGGCTGG 710 consensus_7189#1 CTGCAGTTCATCCAGTGCGGTGCGCCGATCCTGCAGATCTGCTCCTCCGTGCAGAACCAG 557 * * * *** ** *** * * ** * * ** **** * * consensus_7189#0 GGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCG 770 consensus_7189#1 GACTTTACCGTCATCGAGGATTACATACTGGGACTGAAGGCGCTGCTCTATCTG------ 611 * **** **** * ** * * **** * * * ** * ** consensus_7189#0 CGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTC 830 consensus_7189#1 -----CGCGCGAACC----CGCCCCGGAAGCACTGC---CCTGGGATGGCCAAGGTCGCC 659 ** *** * ** ** * ****** * ** * ** * ** * consensus_7189#0 AACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTG 890 consensus_7189#1 ACCAGCGGGCCNAAGCTGCAGAAGGGGCAAAACCGGTCGCT-----CCGTTGCAGGGGCG 714 * ** ** ** * * ***** * ** * *** * * * * * consensus_7189#0 AAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCG 950 consensus_7189#1 AGGACGGGCAAGCCCGCGTGCTTGCACTTTCGGGGAGGTACAAGAAGGCACAGCGNGA-G 773 * * * * *** ** *** * * * * * * * ****** * * consensus_7189#0 GACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAAC 1010 consensus_7189#1 GAGAAGCTTGGCCAAATTGTGGCCTTCCANGCGAC-GGGTCCCACNTGTTGGGG---AAC 829 ** * * * * * *** * ** ** ** ** * * * *** consensus_7189#0 CTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTG--CGGTCAAGACC 1068 consensus_7189#1 CCGGNTTTNGCGGGNCGAAAGCACCGGGCACNAATGNGGCAANCGCAGCNGGTAAGGANA 889 * * * ** * * * * * * *** * * * *** * ** consensus_7189#0 CCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCG 1128 consensus_7189#1 CCAGAGTTCTGGGCANNANCCAGGGNATGATTTACCCGAGNNTAAGNGAATNTCTCTGGG 949 ** * ** ** * * * * * * * * * *** * consensus_7189#0 TGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTC 1188 consensus_7189#1 CGGGG----------ANATTGCCCGGATCG----GGATTCAAAGGTGG------------ 983 * * * *** ** **** * * *** ** consensus_7189#0 AGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACG 1248 consensus_7189#1 ------------------------------------------------------------ consensus_7189#0 GCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCA 1308 consensus_7189#1 ------------------------------------------------------------ consensus_7189#0 ACGCCACCAGAC 1320 consensus_7189#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||