These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1123 fasta sequence [TTTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGGGGAGAGGGCAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTACTACGTGAAGCAAGGGTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAACAAAAAGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCACAACATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCA-TTTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATGATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAACAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCTAATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAGTCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAATTTGGAAACTAACAATAGAGATGAGTCATATAAAAAAAAAAAC] [+] EMBL BX628899 [TTTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGGGGAGAGGGCAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTACTACGTGAAGCAAGGGTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAACAAAAAGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCACAACATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCA TTTTTTNNTATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGA ] [+] EMBL BX616526 [ TTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGAGGAGAGGGCAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTACTACGTGAAGCAAGGTTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAACAAAACGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCGCAACATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCAT ] [+] EMBL BX619674 [ ACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCA TTTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAG ] [+] EMBL BX609341 [ CCAAGATCAAGAACATGCACTGGTGAGTTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATGATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAACAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCTAATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAGTCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAATTTGGAAACTAACAATAGAGATGAGTCATATAAAAAAAAAAAC] [+] EMBL BM576826 [ ccgTGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATGATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAACAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCTAATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAGTCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAATTTGGA ] consensusID : consensus_7205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [CCGGAGGAATATGATAAGGAAAGGCAAGGATATGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATGAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAAT] [+] EMBL BM639626 [CCGGAGGAATATGATAAGGAAAGGCAAGGATATGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATGAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7205#0 TTTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGGGGAGAGGG 60 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 CAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTA 120 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 CTACGTGAAGCAAGGGTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAAC 180 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 AAAAAGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCACAAC 240 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 ATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGC 300 consensus_7205#1 ------------------------CCGGAGGAATATGAT--AAGGAAAGGCAAGGATA-- 32 * ** ** * * ** * ** consensus_7205#0 TGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTTCATATATACA 360 consensus_7205#1 TGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTT-CATATATACA 91 ************************************************* ********** consensus_7205#0 TGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTT 420 consensus_7205#1 TGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTT 151 ************************************************************ consensus_7205#0 TAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGG 480 consensus_7205#1 TAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGG 211 ************************************************************ consensus_7205#0 ATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAA 540 consensus_7205#1 ATGAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAA 271 ** ***************************** *************************** consensus_7205#0 ACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACAT 600 consensus_7205#1 ACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACAT 331 ************************************************************ consensus_7205#0 TGTGTAATATGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCA 660 consensus_7205#1 TGTGTAATATGCGTATCGAAGAGATGAG-ATAGCTGAACATAATTCATCCTAGATGAGCA 390 **************************** ******************************* consensus_7205#0 CATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCA 720 consensus_7205#1 CATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCA 450 ************************************************************ consensus_7205#0 AGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAA 780 consensus_7205#1 AGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAA 510 ************************************************************ consensus_7205#0 CTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATG 840 consensus_7205#1 CTTGTAAAAT-------------------------------------------------- 520 ********** consensus_7205#0 ATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAA 900 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 CAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCT 960 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 AATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAG 1020 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 TCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAA 1080 consensus_7205#1 ------------------------------------------------------------ consensus_7205#0 TTTGGAAACTAACAATAGAGATGAGTCATATAAAAAAAAAAAC 1123 consensus_7205#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||