These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence [AGGCAGATCGGCACGAGGGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGGTACGACGAC-AGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACAAATCGGTCGGCCAACTTTATCGACGTGACAATGGGCTCGATGCTTGGATGATCTTGGTCGCCAGCGAGGTGAACCGTATTGTGAACCTTCTCTGGAACGCAGGGACCCGGCAAAGGGATTAAGGTAGAAGANAGGGATTCGAGAATACCGGTGTAGGAATTGATTCAGATTTTGGGCTTAAAAAGGGGATTAAGAGGTTAAAAGGTTAAATTTAAACGTAACTAGCNCTCGGGAAAGGGGTTGCGNCAGTTCAAGAAGAAGCNGATGCAG] [+] EMBL BX467706 [AGGCAGATCGGCACGAGGGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGGTACGACGAC AGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACAAATCGGTCGGCCAACTTTATCGACGTGACAATGGGCTCGATGCTTGGATGATCTTGGTCGCCAGCGAGGTGAACCGTATTGTGAACCTTCTCTGGAACGCAGGGACCCGGCAAAGGGATTAAGGTAGAAGANAGGGATTCGAGAATACCGGTGTAGGAATTGATTCAGATTTTGGGCTTAAAAAGGGGATTAAGAGGTTAAAAGGTTAAATTTAAACGTAACTAGCNCTCGGGAAAGGGGTTGCGNCAGTTCAAGAAGAAGCNGATGCAG] [+] EMBL BM601081 [ ccgCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAA GTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGG ] consensusID : consensus_7209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 762 fasta sequence [CCGCACTGCTGGCAGTAAAATCGAAAACAGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACGACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACCAAATCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACGCAGACCGCAAGGATAAGTAGAGAGGGATAGAGATACAGTAAGAATAATCAGATTTTGCTAAAAAGCG] [+] EMBL BM583815 [CCGCACTGCTGGCAGTAAAATCGAAAACAGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACGACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACCAAATCGGTCGCCAACTTTATC ] [+] EMBL BM612986 [ ccgCAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACCAAATCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACGCAGACCGCAAGGATAAGTAGAGAGGGATAGAGATACAGTAAGAATAATCAGATTTTGCTA ] [-] EMBL CNS091DK [ AGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACTAAGTCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTTTGAACGCAGACCGCAAGGATAAGTAGAGAGGGATAGAGATGCAGTAAGAATAATCAGATATTGCTAAAAAGCG] consensusID : consensus_7209#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GCCTACTGNGAAAAATCGAAAACAGAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCCGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACTAAGTCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACG] [+] EMBL CNS091DJ [GCCTACTGNGAAAAATCGAAAACAGAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCCGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACTAAGTCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7209#1 CCGCACTGCTGGCAGTAAAATCGAAA--ACAGAAATATTCCCTGCCGGCTGGATTGACCG 58 consensus_7209#2 --GC-CTACTGNGA--AAAATCGAAA--ACAGAA-TATTCCCTGCCGGCTGGATTGACCG 52 consensus_7209#0 -------------AGGCAGATCGGCACGAGGGAAATATTCCCTGCCGGCTGGATTGACCG 47 * * **** * * *** ************************* consensus_7209#1 AATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGC 118 consensus_7209#2 AATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGC 112 consensus_7209#0 AATCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGC 107 ****** ** ****** *********************** ************ ****** consensus_7209#1 TCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAG 178 consensus_7209#2 TCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAG 172 consensus_7209#0 TCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAG 167 *********************************************** ************ consensus_7209#1 GTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTG 238 consensus_7209#2 GTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTG 232 consensus_7209#0 GTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTG 227 ************************************************************ consensus_7209#1 AAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGG 298 consensus_7209#2 AAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGG 292 consensus_7209#0 AAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGG 287 ************************************************************ consensus_7209#1 CTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAG 358 consensus_7209#2 CTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAG 352 consensus_7209#0 CTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAG 347 ************************************************************ consensus_7209#1 TATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTG 418 consensus_7209#2 TATTCGTTTCCCGCCTCGAAGCCCGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTG 412 consensus_7209#0 TATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTG 407 *********************** ************************************ consensus_7209#1 ATGGGCGTGCTGACCGTCTACACGACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAAC 478 consensus_7209#2 ATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAAC 472 consensus_7209#0 ATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAAC 467 *********************** ************************************ consensus_7209#1 CAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAG-TA 537 consensus_7209#2 CAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAG-TA 531 consensus_7209#0 CAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGGTA 527 ******************** ************************************ ** consensus_7209#1 CGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAAC 597 consensus_7209#2 CGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAAC 591 consensus_7209#0 CGACGACA-GTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAAC 586 ******** *************************************************** consensus_7209#1 GGTCACCAAATCGGTCG-CCAACTTTATCGACGTGA--ATGGGCTCG-TGCT-GGATGAT 652 consensus_7209#2 GGTCACTAAGTCGGTCG-CCAACTTTATCGACGTGA--ATGGGCTCG-TGCT-GGATGAT 646 consensus_7209#0 GGTCAC-AAATCGGTCGGCCAACTTTATCGACGTGACAATGGGCTCGATGCTTGGATGAT 645 ****** ** ******* ****************** ********* **** ******* consensus_7209#1 CT-GGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCT---GAACGCAGACCGCAAGGA 708 consensus_7209#2 CT-GGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCT---GAACG------------- 689 consensus_7209#0 CTTGGTCGCCAGCGAGGTGAACCGTATTGTGAACCTTCTCTGGAACGCAGGGACCCGGCA 705 ** ******************************* *** ***** consensus_7209#1 TAAGTAGAGAGGGATAGAGATACAGTAAGAATAATCAGATTTTGCTAAAAAGCG------ 762 consensus_7209#2 ------------------------------------------------------------ consensus_7209#0 AAGGGATTAAGGTAGAAGANAGGGATTCGAGAATACCGGTGTAGGAATTGATTCAGATTT 765 consensus_7209#1 ------------------------------------------------------------ consensus_7209#2 ------------------------------------------------------------ consensus_7209#0 TGGGCTTAAAAAGGGGATTAAGAGGTTAAAAGGTTAAATTTAAACGTAACTAGCNCTCGG 825 consensus_7209#1 -------------------------------------- consensus_7209#2 -------------------------------------- consensus_7209#0 GAAAGGGGTTGCGNCAGTTCAAGAAGAAGCNGATGCAG 863 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||