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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence
[AGGCAGATCGGCACGAGGGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGGTACGACGAC-AGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACAAATCGGTCGGCCAACTTTATCGACGTGACAATGGGCTCGATGCTTGGATGATCTTGGTCGCCAGCGAGGTGAACCGTATTGTGAACCTTCTCTGGAACGCAGGGACCCGGCAAAGGGATTAAGGTAGAAGANAGGGATTCGAGAATACCGGTGTAGGAATTGATTCAGATTTTGGGCTTAAAAAGGGGATTAAGAGGTTAAAAGGTTAAATTTAAACGTAACTAGCNCTCGGGAAAGGGGTTGCGNCAGTTCAAGAAGAAGCNGATGCAG]
[+] EMBL BX467706 [AGGCAGATCGGCACGAGGGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGGTACGACGAC AGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACAAATCGGTCGGCCAACTTTATCGACGTGACAATGGGCTCGATGCTTGGATGATCTTGGTCGCCAGCGAGGTGAACCGTATTGTGAACCTTCTCTGGAACGCAGGGACCCGGCAAAGGGATTAAGGTAGAAGANAGGGATTCGAGAATACCGGTGTAGGAATTGATTCAGATTTTGGGCTTAAAAAGGGGATTAAGAGGTTAAAAGGTTAAATTTAAACGTAACTAGCNCTCGGGAAAGGGGTTGCGNCAGTTCAAGAAGAAGCNGATGCAG]
[+] EMBL BM601081 [ ccgCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAA GTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGG ]
consensusID : consensus_7209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 762 fasta sequence
[CCGCACTGCTGGCAGTAAAATCGAAAACAGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACGACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACCAAATCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACGCAGACCGCAAGGATAAGTAGAGAGGGATAGAGATACAGTAAGAATAATCAGATTTTGCTAAAAAGCG]
[+] EMBL BM583815 [CCGCACTGCTGGCAGTAAAATCGAAAACAGAAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACGACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACCAAATCGGTCGCCAACTTTATC ]
[+] EMBL BM612986 [ ccgCAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACCAAATCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACGCAGACCGCAAGGATAAGTAGAGAGGGATAGAGATACAGTAAGAATAATCAGATTTTGCTA ]
[-] EMBL CNS091DK [ AGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACTAAGTCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTTTGAACGCAGACCGCAAGGATAAGTAGAGAGGGATAGAGATGCAGTAAGAATAATCAGATATTGCTAAAAAGCG]
consensusID : consensus_7209#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GCCTACTGNGAAAAATCGAAAACAGAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCCGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACTAAGTCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACG]
[+] EMBL CNS091DJ [GCCTACTGNGAAAAATCGAAAACAGAATATTCCCTGCCGGCTGGATTGACCGAATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGCTCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAGGTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTGAAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGGCTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAGTATTCGTTTCCCGCCTCGAAGCCCGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTGATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAACCAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGTACGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAACGGTCACTAAGTCGGTCGCCAACTTTATCGACGTGAATGGGCTCGTGCTGGATGATCTGGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCTGAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7209#1 CCGCACTGCTGGCAGTAAAATCGAAA--ACAGAAATATTCCCTGCCGGCTGGATTGACCG 58
consensus_7209#2 --GC-CTACTGNGA--AAAATCGAAA--ACAGAA-TATTCCCTGCCGGCTGGATTGACCG 52
consensus_7209#0 -------------AGGCAGATCGGCACGAGGGAAATATTCCCTGCCGGCTGGATTGACCG 47
* * **** * * *** *************************
consensus_7209#1 AATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGC 118
consensus_7209#2 AATCTCCTGTAAACTTTTGATAAATACAACTACCCAGGCTGCCGATCCTTGCACCCCGGC 112
consensus_7209#0 AATCTCTTGCAAACTTCTGATAAATACAACTACCCAGGCTACCGATCCTTGCATCCCGGC 107
****** ** ****** *********************** ************ ******
consensus_7209#1 TCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAG 178
consensus_7209#2 TCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCTAAGGAGGAAGAG 172
consensus_7209#0 TCCAGTATGTCCAACAAGAACAAAAAGCAATCGGAAACGGTCCCTGCCAAGGAGGAAGAG 167
*********************************************** ************
consensus_7209#1 GTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTG 238
consensus_7209#2 GTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTG 232
consensus_7209#0 GTGGTCCAGATAAACAAATGGGACGGAACAGCGGTGAAGCACGCGCTGGATGATTCGGTG 227
************************************************************
consensus_7209#1 AAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGG 298
consensus_7209#2 AAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGG 292
consensus_7209#0 AAGAATGCGCTGATGGAGCACAGCAACATGAAGGAGCATTTCGCCATCATCGACGGGCGG 287
************************************************************
consensus_7209#1 CTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAG 358
consensus_7209#2 CTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAG 352
consensus_7209#0 CTGTTCATCTGTGCGATGGCCGTTGCAATTGCGCTGGTTGCGCTCGGTTACGACTATCAG 347
************************************************************
consensus_7209#1 TATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTG 418
consensus_7209#2 TATTCGTTTCCCGCCTCGAAGCCCGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTG 412
consensus_7209#0 TATTCGTTTCCCGCCTCGAAGCCGGTGCTGATCGTGTGCGTGCTGTGCTACTTCTTCCTG 407
*********************** ************************************
consensus_7209#1 ATGGGCGTGCTGACCGTCTACACGACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAAC 478
consensus_7209#2 ATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAAC 472
consensus_7209#0 ATGGGCGTGCTGACCGTCTACACCACGTACGTGGAGAAGGGCATCTTTGTCGTGGGCAAC 467
*********************** ************************************
consensus_7209#1 CAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAG-TA 537
consensus_7209#2 CAGAAGGATGCCAGCGGTGCCGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAG-TA 531
consensus_7209#0 CAGAAGGATGCCAGCGGTGCTGTGAAACGATGGCAGGCAAGTTCCGACATGAAGAAGGTA 527
******************** ************************************ **
consensus_7209#1 CGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAAC 597
consensus_7209#2 CGACGACAAGTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAAC 591
consensus_7209#0 CGACGACA-GTACGAGCTGACGGTGCAGCTGAAGGATTCGCGCGGCATTCGGGAAGCAAC 586
******** ***************************************************
consensus_7209#1 GGTCACCAAATCGGTCG-CCAACTTTATCGACGTGA--ATGGGCTCG-TGCT-GGATGAT 652
consensus_7209#2 GGTCACTAAGTCGGTCG-CCAACTTTATCGACGTGA--ATGGGCTCG-TGCT-GGATGAT 646
consensus_7209#0 GGTCAC-AAATCGGTCGGCCAACTTTATCGACGTGACAATGGGCTCGATGCTTGGATGAT 645
****** ** ******* ****************** ********* **** *******
consensus_7209#1 CT-GGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCT---GAACGCAGACCGCAAGGA 708
consensus_7209#2 CT-GGTCGCCAGCGAGGTGAACCGTATTGTGAACTCTCT---GAACG------------- 689
consensus_7209#0 CTTGGTCGCCAGCGAGGTGAACCGTATTGTGAACCTTCTCTGGAACGCAGGGACCCGGCA 705
** ******************************* *** *****
consensus_7209#1 TAAGTAGAGAGGGATAGAGATACAGTAAGAATAATCAGATTTTGCTAAAAAGCG------ 762
consensus_7209#2 ------------------------------------------------------------
consensus_7209#0 AAGGGATTAAGGTAGAAGANAGGGATTCGAGAATACCGGTGTAGGAATTGATTCAGATTT 765
consensus_7209#1 ------------------------------------------------------------
consensus_7209#2 ------------------------------------------------------------
consensus_7209#0 TGGGCTTAAAAAGGGGATTAAGAGGTTAAAAGGTTAAATTTAAACGTAACTAGCNCTCGG 825
consensus_7209#1 --------------------------------------
consensus_7209#2 --------------------------------------
consensus_7209#0 GAAAGGGGTTGCGNCAGTTCAAGAAGAAGCNGATGCAG 863
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||