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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1462 fasta sequence
[AGNATCGGCAGCACGCGCGCTCAGTGATTATCCGTGATAGTAAAATCACTTTTTAAGTGCAGCCAACGATGCATAGAATTCCCTCGCTAGGAGTGTAACAAATAAGCATACGACACCTTTCTCTTCTCCGTACGGCTGGCACTGAACAATGAAAGGACACAGCAGGGCTCGGAACGGATGCGCACCTTGTGCGTTTATGTGTGCGCTTGTGTTAACCGAGCTGAGTGAGCTGAAAAGTTACTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGGTAACTGCATGCATCCGCC-GCAACCGCTTTAGCGCCCAGTTGGTGTCACATTCCTGTGATTTTGGCTTCGTTTCTGCCGATTAAATTGGGCTTTGAGAGTTGGTGGTAGAGAGTGAGTGAAATCGACGCTCCCCGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACAGAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAGACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAAGGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATACAAAAACCTGCGCCAACGATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGT]
[+] EMBL BX619913 [AGNATCGGCAGCACGCGCGCTCAGTGATTATCCGTGATAGTAAAATCACTTTTTAAGTGCAGCCAACGATGCATAGAATTCCCTCGCTAGGAGTGTAACAAATAAGCATACGACACCTTTCTCTTCTCCGTACGGCTGGCACTGAACAATGAAAGGACACAGCAGGGCTCGGAACGGATGCGCACCTTGTGCGTTTATGTGTGCGCTTGTGTTAACCGAGCTGAGTGAGCTGAAAAGTTACTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGGTAACTGCATGCATCCGCCNGCAACCG ]
[+] EMBL BX612089 [ CGAGCTGAGTGAGCTGAAAAGTTACTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGGTAACTGCATGCATCCGCC GCAACCGCTTTAGCGCCCAGTTGGTGTCACATTCCTGTGATTTTGGCTTCGTTTCTGCCGATTAAATTGGGCTTTGAGAGTTGGTGGTAGAGAGTGAGTGAAATCGACGCTCCCCGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACAGAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAGACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAAGGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATACAAAAACCTGCGCCAACGATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGC ]
[+] EMBL BX613138 [ AGAGAGTGAGTGAAATCGACGCTCCCTGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACAGAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAGACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAAGGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATACAAAAACCTGCGCCAACGATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCC ]
[+] EMBL BX628676 [ GATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGT]
consensusID : consensus_7210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGCCCACGCGTCCGCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGTCGCCGGCTGAAAAGGGGTGTGAAATGATACCGCTTAAAACCGATCATTTGTCATATAAGTAACACACTAAGCTGATATGATAATTACATATTATTATTATTA]
[+] EMBL BM631274 [CCGCCCACGCGTCCGCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGTCGCCGGCTGAAAAGGGGTGTGAAATGATACCGCTTAAAACCGATCATTTGTCATATAAGTAACACACTAAGCTGATATGATAATTACATATTATTATTATTA]
consensusID : consensus_7210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[CCGCCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATAGAAACCCCGCGCCAATGATCGCCAATGATGGTCGTTGGGTGTTTTTCTCTCTTCTCCAACACCCGTTTTGGTCAGCGTCGTTGCTGGGGACACTAAAAAGTAGGCTTTGAAAATGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGCATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGGAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACAC]
[+] EMBL BM588386 [CCGCCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATAGAAACCCCGCGCCAATGATCGCCAATGATGGTCGTTGGGTGTTTTTCTCTCTTCTCCAACACCCGTTTTGGTCAGCGTCGTTGCTGGGGACACTAAAAAGTAGGCTTTGAAAATGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGCATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGGAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7210#0 AGNATCGGCAGCACGCGCGCTCAGTGATTATCCGTGATAGTAAAATCACTTTTTAAGTGC 60
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 AGCCAACGATGCATAGAATTCCCTCGCTAGGAGTGTAACAAATAAGCATACGACACCTTT 120
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 CTCTTCTCCGTACGGCTGGCACTGAACAATGAAAGGACACAGCAGGGCTCGGAACGGATG 180
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 CGCACCTTGTGCGTTTATGTGTGCGCTTGTGTTAACCGAGCTGAGTGAGCTGAAAAGTTA 240
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 CTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGG 300
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 TAACTGCATGCATCCGCCGCAACCGCTTTAGCGCCCAGTTGGTGTCACATTCCTGTGATT 360
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 TTGGCTTCGTTTCTGCCGATTAAATTGGGCTTTGAGAGTTGGTGGTAGAGAGTGAGTGAA 420
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 ATCGACGCTCCCCGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACA 480
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 GAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAG 540
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 ACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAA 600
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 GGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGA 660
consensus_7210#2 ---------------------------CCG--CCGGACATGATGGACCCTGGTTGCGGGA 31
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 CTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACAC 720
consensus_7210#2 CTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACAC 91
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 AGAGATTGCAGAGTGACACTAGATACAAA---------AACCTGCGCCAACGATGGTCCT 771
consensus_7210#2 AGAGATTGCAGAGTGACACTAGATAGAAACCCCGCGCCAATGATCGCCAATGATGGTCGT 151
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 TAGGTG---------------------CCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTA 810
consensus_7210#2 TGGGTGTTTTTCTCTCTTCTCCAACACCCGTTTTGGTCAGCGTCGTTGCTGGGGACACTA 211
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 AAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGC 870
consensus_7210#2 AAAAGTAGGCTTTGAAAATGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGC 271
consensus_7210#1 ------------------------------------------------------------
consensus_7210#0 AATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAAT 930
consensus_7210#2 AATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAAT 331
consensus_7210#1 ----------CCGCCCACGCGTCCG--CGTCAGGGCAAGAAAAACACGTTTGAAGCAAAT 48
* * * ** * *********************************
consensus_7210#0 GTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAAC 990
consensus_7210#2 GTCGCATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGGAAAGTAGAGTATGATGAAC 391
consensus_7210#1 GTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAAC 108
**** *********************************** *******************
consensus_7210#0 GCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGAC 1050
consensus_7210#2 GCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGAC 451
consensus_7210#1 GCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGAC 168
************************************************************
consensus_7210#0 AAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAAT 1110
consensus_7210#2 AAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTT-CCTATTAAT 510
consensus_7210#1 AAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAAT 228
************************************************** *********
consensus_7210#0 TCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCA 1170
consensus_7210#2 TCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCA 570
consensus_7210#1 TCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCA 288
************************************************************
consensus_7210#0 AGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTT 1230
consensus_7210#2 AGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTT 630
consensus_7210#1 AGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTT 348
************************************************************
consensus_7210#0 GTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCG 1290
consensus_7210#2 GTAAATTTAACACAC--------------------------------------------- 645
consensus_7210#1 GTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCG 408
***************
consensus_7210#0 TGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAG 1350
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 TGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAG 468
consensus_7210#0 ACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCA 1410
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 ACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCA 528
consensus_7210#0 TACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGT-------- 1462
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 TACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGTCGCCGGCT 588
consensus_7210#0 ------------------------------------------------------------
consensus_7210#2 ------------------------------------------------------------
consensus_7210#1 GAAAAGGGGTGTGAAATGATACCGCTTAAAACCGATCATTTGTCATATAAGTAACACACT 648
consensus_7210#0 ----------------------------------
consensus_7210#2 ----------------------------------
consensus_7210#1 AAGCTGATATGATAATTACATATTATTATTATTA 682
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||