These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 708 fasta sequence [ACCCACGCGTCCGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGG-AGGAGGTGAATTCGCGCCACCTGCGACTCGGCGCGAACAGGCGGAAAGAGATACTGATTCGACCTGGAGGCCGACTCGACGCTG] [+] EMBL BM579927 [ACCCACGCGTCCGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCACCTGCGACTCGGCGCGAACAGGCGGAAAGAGATACTGATTCGACCTGGAGGCCGACTCGACGCTG] [+] EMBL BM649207 [ CCGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGG AGGAG ] [+] EMBL BM603100 [ cCGGTCCAAACGCGGTAGCTCCGTATTAATGGTCAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGG AGGAGGTGAATTCGCGCCACCTGCGA ] consensusID : consensus_7214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAAAATAAAATATGGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCG-GTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCA] [+] EMBL BM616114 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAAAATAAAATATGGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCG GTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCA] [+] EMBL BM628481 [ ccgGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTCAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGAGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAG ] consensusID : consensus_7214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [GTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAAACATGATGTACGCACTGATCGAAGCCGCTGACGCTGATCCCCGGAGAGGTGAAT] [+] EMBL CNS09E88 [GTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAAACATGATGTACGCACTGATCGAAGCCGCTGACGCTGATCCCCGGAGAGGTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7214#1 CCGCCCACGCGTCCGCCCACGCGTCCGGAGAAAATAAAATATGGCGAAAAAATCTGCTGG 60 consensus_7214#2 ------------------------------------------------------------ consensus_7214#0 -------------------------------ACCCACGCGTCCGCGAAAAAATCTGCTGG 29 consensus_7214#1 CGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTG 120 consensus_7214#2 ------------------------------------------------------------ consensus_7214#0 CGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTG 89 consensus_7214#1 AGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCC 180 consensus_7214#2 -----------------------------GTAAACCGCAAGCTAGAGAAAACGTCCGTCC 31 consensus_7214#0 AGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCC 149 ******************************* consensus_7214#1 ATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGC 240 consensus_7214#2 ATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGC 91 consensus_7214#0 ATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGC 209 ************************************************************ consensus_7214#1 GTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTG 300 consensus_7214#2 GTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTG 151 consensus_7214#0 GTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTG 269 ************************************************************ consensus_7214#1 GAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAA 360 consensus_7214#2 GAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAA 211 consensus_7214#0 GAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAA 329 ************************************************************ consensus_7214#1 CATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGC 420 consensus_7214#2 CATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGC 271 consensus_7214#0 CATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGC 389 ************************************************************ consensus_7214#1 TTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTC 480 consensus_7214#2 TTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTC 331 consensus_7214#0 TTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTC 449 ************************************************************ consensus_7214#1 AGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCC 540 consensus_7214#2 AGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCC 391 consensus_7214#0 AGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCC 509 ************************************************************ consensus_7214#1 GATCTGGCACTGCTCATGTCTTCCTG--------------------GCAGAAGCCGGTCG 580 consensus_7214#2 GATCTGGCACTGCTCATGTCTTCCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCG 451 consensus_7214#0 GATCTGGCACTGCTCATGTCTTCCTG--------------------GCAGAAGCCGGTCG 549 ************************** ************** consensus_7214#1 CCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAA-CATGATGTACGCACTGATCGA-GCT 638 consensus_7214#2 CCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAAACATGATGTACGCACTGATCGAAGCC 511 consensus_7214#0 CCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAA-CATGATGTACGCACTGATCGA-GCT 607 ********************** *********** ********************* ** consensus_7214#1 GCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCA----------------------- 675 consensus_7214#2 GCTGACGCTGATCCCCGGAG-AGGTGAAT------------------------------- 539 consensus_7214#0 GCTGACGCTGATCCCGGAGG-AGGTGAATTCGCGCCACCTGCGACTCGGCGCGAACAGGC 666 *************** * * ******** consensus_7214#1 ------------------------------------------ consensus_7214#2 ------------------------------------------ consensus_7214#0 GGAAAGAGATACTGATTCGACCTGGAGGCCGACTCGACGCTG 708 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||