cluster # 7219

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Anopheles gambiae
cluster # 7219 cluster # 7219 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7219#0 length = 1082 sequences # 6

consensus_7219#1 length = 478 sequences # 1

consensusID : consensus_7219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1082
fasta sequence

                              [AAAAATTTATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAG-CTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT-AC-TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC-CC-TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC-C-CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCC-CGCATGCTGCCTTCATAACTTCTATTTAGCGTAACCG]

[+] EMBL CNS0955W             [AAAAATTAATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAG CTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTAACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT AC TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC CC TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC C CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATAAAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGC AAAGAATAGCAGA                                                                                                                                                                  ]
[+] EMBL CNS09KYT             [  catTTTATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAGCCTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGAACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTC  AAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTAAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTAACTCTCTAACCTTAACGCAAACGGCTGATTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CNS09QG5             [       TATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAG CGGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAAAAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT AC TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTTTGTT CC TGCTCTAAACCGCTCTTACCATA                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CNS0955V             [                                                                                                                                                              AAATTTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAATAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAATGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAATACAAACGTT AC TAGTATTTGCCTTTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC CC TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC C CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCCGCGCATGCTGCCTTCATAACTTCTATTTAG        ]
[-] EMBL CNS09QG4             [                                                                                                                                                                                                                                                                                                                                                                                                                                        AGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT AC TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC CC TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCCGTACCGCGCGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCC CGCATGCTGCCTTCATAACTTCTATTTAGCGTA    ]
[-] EMBL CNS09KYS             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTAAAAATAAAAACGTTAACATAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCACCATGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC C CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCC CGCATGCTGCCTTCATAACTTATATTTAGCGTAACCG]




>consensus_7219#0
AAAAATTTATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATA
TTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGA
CGGGAGCTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCAT
CGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGG
GACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAA
AAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGT
CTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGG
GTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGT
GACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGT
ATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAAC
AAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATA
CGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCTCTAAACCGCTC
TTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGG
GTGCCGGACTCCGGGCGAAAACCCGGTACCCCGCATCCGGACACTTCTAAGCTAGTTCAT
CGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGA
GTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCT
GGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCAC
TGCTGTACACGTACGCGTACGCCCCCGCATGCTGCCTTCATAACTTCTATTTAGCGTAAC
CG

consensusID : consensus_7219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [ATTGTATTACTCAAAAGGTTTAAAAAAAAAAAAAAAAAAAAAAACCAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGTGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCCAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAATAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTAAAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCTCTAAACCGCTCTTACCATACTCTCTTTCGG]

[-] EMBL BM627202             [ATTGTATTACTCAAAAGGTTTAAAAAAAAAAAAAAAAAAAAAAACCAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGTGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCCAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAATAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTAAAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCTCTAAACCGCTCTTACCATACTCTCTTTCGG]




>consensus_7219#1
ATTGTATTACTCAAAAGGTTTAAAAAAAAAAAAAAAAAAAAAAACCAATGAGAATAACCC
AGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGA
AAGGTGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCG
GGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCCAACCTTAACGCAA
ACGGCTGAGTATATCCGGGTGGTGGTGGCTTAATAAAGTATCGGTATGCAGAAAACCATC
CCGGCAGGTTAGTTGAGCATTTCGCATTTAAAAAAAAACAAACGTTACTAGTATTTGCCT
CTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCG
TTCTATTCTAGGTGAGTGTGTCCCTGCTCTAAACCGCTCTTACCATACTCTCTTTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7219#0      AAAAATTTATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATA 60
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      TTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGA 120
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      CGGGAGCTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCAT 180
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      CGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGG 240
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      GACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAA 300
consensus_7219#1      --------------------------------ATTGTATTACTCAAAAGGTTTAAAAAAA 28
                                                      ***************** *** ******

consensus_7219#0      AAAAAA-----------CAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTG 349
consensus_7219#1      AAAAAAAAAAAAAAAACCAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTG 88
                      ******           *******************************************

consensus_7219#0      CCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAG 409
consensus_7219#1      CCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGTGAAATAACGGATTCGTTGCATAG 148
                      ************************************ ***********************

consensus_7219#0      GGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAA 469
consensus_7219#1      GGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAA 208
                      ************************************************************

consensus_7219#0      TTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGG 529
consensus_7219#1      TTATCGAAAGTGACTCTCCAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGG 268
                      ****************** *****************************************

consensus_7219#0      CTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATT 589
consensus_7219#1      CTTAATAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATT 328
                      ***** ******************************************************

consensus_7219#0      TTTAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTA 649
consensus_7219#1      TAAAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTA 388
                      *  *********************************************************

consensus_7219#0      CGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCT 709
consensus_7219#1      CGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCT 448
                      ************************************************************

consensus_7219#0      CTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGAT 769
consensus_7219#1      CTAAACCGCTCTTACCATACTCTCTTTCGG------------------------------ 478
                      ***************************                                 

consensus_7219#0      TGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACCCCGCATCCGGACACTTCTA 829
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      AGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAG 889
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      GTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTT 949
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      AAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCAC 1009
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      TTTCCCGTCACTGCTGTACACGTACGCGTACGCCCCCGCATGCTGCCTTCATAACTTCTA 1069
consensus_7219#1      ------------------------------------------------------------
                                                                                  

consensus_7219#0      TTTAGCGTAACCG 1082
consensus_7219#1      -------------