cluster # 7223

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Anopheles gambiae
cluster # 7223 cluster # 7223 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7223#0 length = 634 sequences # 4
consensus_7223#1 length = 547 sequences # 1

consensus_7223#2 length = 528 sequences # 1
consensus_7223#3 length = 411 sequences # 1

consensusID : consensus_7223#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 634
fasta sequence

                              [CCGCCCACGCGTCCGAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGA-TTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCGACTCCGCACCATCATGCTGGTGCGCTTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCGCTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTT]

[+] EMBL BM600560             [CCGCCCACGCGTCCGAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCT                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX617672             [                                        AAAGGGCACTGTTAGAGGGGGGGA TTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCGACTCCGCACCATCATGCTGGTGCGCTTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCGCTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTT]
[+] EMBL BX618547             [                                                                                                                                                           AAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTTGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCGACTCCGCACCATCATGCTGGTGCGCTTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAAC                                                                                                          ]
[+] EMBL BX616399             [                                                                                                                                                                                                                                 TTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCTTTCAAAGAAATTGTTGTTTTAGT                                                                                                                                                                                                                                                       ]




>consensus_7223#0
CCGCCCACGCGTCCGAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGG
GGGATTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGA
CGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTC
TTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAAC
CGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAG
AACACAACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTA
CGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCG
ACTCCGCACCATCATGCTGGTGCGCTTTTTTTAACTGTACTTTAATGTTTTACACGCTTC
AAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGT
TTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCGCTTATCTTTCGCG
GCTAACATACTGCGCTTTTCATCTGGCGGCCGTT

consensusID : consensus_7223#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CAAGAATCCCCACGAGGTTATTGACCATGCACGAATTAGATCNTTAGTGGGAGCGGGTGGAGCGGGAGAGGGCCAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAAGGGGGGATTTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTGGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTTTCCCCGTTTTTGGCAACTGCCGGGGTACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCT]

[+] EMBL BX466210             [CAAGAATCCCCACGAGGTTATTGACCATGCACGAATTAGATCNTTAGTGGGAGCGGGTGGAGCGGGAGAGGGCCAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAAGGGGGGATTTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTGGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTTTCCCCGTTTTTGGCAACTGCCGGGGTACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCT]




>consensus_7223#1
CAAGAATCCCCACGAGGTTATTGACCATGCACGAATTAGATCNTTAGTGGGAGCGGGTGG
AGCGGGAGAGGGCCAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGA
AGGGGGGATTTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTT
AGTGGACGCCTTCGCTCCCGATGGCTGCACAATTGGTAAGAAATGGTGAACTCTCCCTCA
CCGTTCTTGCACTCGTTAATGTTCCCTTTTTCCCCGTTTTTGGCAACTGCCGGGGTACGT
TGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACGA
AAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTT
CCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAA
CCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTT
ACACGCT

consensusID : consensus_7223#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [TGTGAGGATGACTNTGAGGCTGCAGCCGGTGTCAGGGTTCAGGGACGCAGGATGCGCCAAAGCGGAGGGCGGAATGTACATTCTATAAAACGGGAAGTCTCTCAGTAGACAGTGCAACAAAACGCGGCAAAGCAAACGACATTCCGGTGTACATTCAGGGATTTTTATGAGCATAACATTATGAGCGGTCGGGAACATGCGCAATGTTGCAGCCCCAGTTCGTTTCGTATCANGACGCAGTTTTAGCACGTTGTGTGTTAGATGTTGACCATGCACGAATTAGATTTTAGTGGGAGCGGGTGGGGCGGGAGAGGGTAAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTTAATGTTCCCCTTTTCTCCCCGTTTTTNGG]

[+] EMBL BX626126             [TGTGAGGATGACTNTGAGGCTGCAGCCGGTGTCAGGGTTCAGGGACGCAGGATGCGCCAAAGCGGAGGGCGGAATGTACATTCTATAAAACGGGAAGTCTCTCAGTAGACAGTGCAACAAAACGCGGCAAAGCAAACGACATTCCGGTGTACATTCAGGGATTTTTATGAGCATAACATTATGAGCGGTCGGGAACATGCGCAATGTTGCAGCCCCAGTTCGTTTCGTATCANGACGCAGTTTTAGCACGTTGTGTGTTAGATGTTGACCATGCACGAATTAGATTTTAGTGGGAGCGGGTGGGGCGGGAGAGGGTAAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTTAATGTTCCCCTTTTCTCCCCGTTTTTNGG]




>consensus_7223#2
TGTGAGGATGACTNTGAGGCTGCAGCCGGTGTCAGGGTTCAGGGACGCAGGATGCGCCAA
AGCGGAGGGCGGAATGTACATTCTATAAAACGGGAAGTCTCTCAGTAGACAGTGCAACAA
AACGCGGCAAAGCAAACGACATTCCGGTGTACATTCAGGGATTTTTATGAGCATAACATT
ATGAGCGGTCGGGAACATGCGCAATGTTGCAGCCCCAGTTCGTTTCGTATCANGACGCAG
TTTTAGCACGTTGTGTGTTAGATGTTGACCATGCACGAATTAGATTTTAGTGGGAGCGGG
TGGGGCGGGAGAGGGTAAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTT
AGAGGGGGGGATTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTT
TAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTC
ACCGTTCTTGCACTCGTTTAATGTTCCCCTTTTCTCCCCGTTTTTNGG

consensusID : consensus_7223#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [CCGCCCACGCGTCCGGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCACTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTTGCTTTTTTGGCGTTTTTGAAAGCGTGCTAGAG]

[+] EMBL BM614222             [CCGCCCACGCGTCCGGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCACTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTTGCTTTTTTGGCGTTTTTGAAAGCGTGCTAGAG]




>consensus_7223#3
CCGCCCACGCGTCCGGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATC
AAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTG
TTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGC
TGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGC
CGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTTCGTTCTA
CTGTGTAAGATCATTTACTTTACACGCTTGCACTTATCTTTCGCGGCTAACATACTGCGC
TTTTCATCTGGCGGCCGTTGCTTTTTTGGCGTTTTTGAAAGCGTGCTAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7223#0      ------------------------------------------------------------
consensus_7223#3      ------------------------------------------------------------
consensus_7223#1      CAAGAATCCCCACGAGGTTATTGACCATGCACGAATTAGATCNTTAGTGGGAGCGGGTGG 60
consensus_7223#2      ------------------------------------------------------------
                                                                                  

consensus_7223#0      ----CCGCCCACGCGTCCGAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGA 56
consensus_7223#3      ------------------------------------------------------------
consensus_7223#1      AGCGGGAGAGGGCCAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGA 120
consensus_7223#2      ------------------------------------------------------------
                                                                                  

consensus_7223#0      GGGGGGGATTTTTTTTTT--CGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTT 114
consensus_7223#3      ------------------------------------------------------------
consensus_7223#1      AGGGGGGATTTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTT 180
consensus_7223#2      ------------------------------------------------------------
                                                                                  

consensus_7223#0      AGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCA 174
consensus_7223#3      ------------------------------------------------------------
consensus_7223#1      AGTGGACGCCTTCGCTCCCGATGGCTGCACAATTGGTAAGAAATGGTGAACTCTCCCTCA 240
consensus_7223#2      ------------------------------------------------------------
                                                                                  

consensus_7223#0      CCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGT 234
consensus_7223#3      ------------------------------------------------------------
consensus_7223#1      CCGTTCTTGCACTCGTTAATGTTCCCTTTTTCCCCGTTTTTGGCAACTGCCGGGGTACGT 300
consensus_7223#2      ----------------------------TGTGAGGATGACTNTGAGGCTGCAGCCGGTGT 32
                                                                                  

consensus_7223#0      TGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAA 294
consensus_7223#3      ---------------------CCGCCCACGCGTC----CGGGCTTATATCCTAAAAACGA 35
consensus_7223#1      TGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACGA 360
consensus_7223#2      CAGGGTTCAGGGACGCAGGATGCGCCAAAGCGGAGGGCGGAATGTACATTCTATAAAACG 92
                                            *    * * *            ** ** *** ***   

consensus_7223#0      AAAAAGAACACAACAAAACGTTTATCAAAA-ACGTCGGCAATTACTGTAAAACAGCCATT 353
consensus_7223#3      AAAAAAGGAACA-CAAAACGTTTATCAAAA-ACGTCGGCAATTACTGTAAAACAGCCATT 93
consensus_7223#1      AAAAAAGGAACA-CAAAACGTTTATCAAAA-ACGTCGGCAATTACTGTAAAACAGCCATT 418
consensus_7223#2      GGAAGTCTCTCAGTAGACAGTGCAACAAAACGCGGCAAAGCAAACGACATTCCGGTGTAC 152
                        **      **  * *  **  * *****  ** *       **   *   * *     

consensus_7223#0      TTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCT-TGTTCGTTTTGTTATAA 412
consensus_7223#3      TTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCT-TGTTCGTTTTGTTATAA 152
consensus_7223#1      TTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCT-TGTTCGTTTTGTTATAA 477
consensus_7223#2      ATTCAGGGATTTTTATGAGCATAACATTATGAGCGGTCGGGAACATGCGCAATGTTGCAG 212
                       * *       ** *     **     * * **   **       * **   ****  * 

consensus_7223#0      CAACCGC-GACTCCGCACCATCATGCTG-----GTGCGC-TTTTTTTAACTGT--ACTTT 463
consensus_7223#3      CAACCGC-CACTCCGCACCATCATGCTGCT--GGTGCGTATTTTTTTAACTGT--ACTTT 207
consensus_7223#1      CAACCGC-CACTCCGCACCATCATGCTGCT--GGTGCGTATTTTTTTAACTGT--ACTTT 532
consensus_7223#2      CCCCAGTTCGTTTCGTATCANGACGCAGTTTTAGCACGTTGTGTGTTAGATGTTGACCAT 272
                      *  * *     * ** * **  * ** *     *  **   * * ***  ***  **  *

consensus_7223#0      A-ATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATT-- 520
consensus_7223#3      A-ATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATT-- 264
consensus_7223#1      A-ATGTTTTACACGCT-------------------------------------------- 547
consensus_7223#2      GCACGAATTAGATTTTAGTGGGAGCGGGTGGGGCGGGAGAGGGTAAAGCAAACACATCAG 332
                        * *  *** *   *                                            

consensus_7223#0      ------------CCGTAA----ACTTTTAGTTACGT---TTTTTTTT-CGTTCTACTGTG 560
consensus_7223#3      ------------CCGTAA----ACTTTTAGTTACGT---TTTTTTTTTCGTTCTACTGTG 305
consensus_7223#1      ------------------------------------------------------------
consensus_7223#2      AGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTCGCGTAGAACA 392
                                                                                  

consensus_7223#0      TAAGATCATTTACTTT----ACACGCTTGCGCTTAT-CTTTCGCGGCTAACATACTGCGC 615
consensus_7223#3      TAAGATCATTTACTTT----ACACGCTTGCACTTAT-CTTTCGCGGCTAACATACTGCGC 360
consensus_7223#1      ------------------------------------------------------------
consensus_7223#2      TAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATG-GCTGCAC 451
                                                                                  

consensus_7223#0      TTTTCATCTGG--CGGCCGTT--------------------------------------- 634
consensus_7223#3      TTTTCATCTGG--CGGCCGTTGCTTTTTTGGCGTTTTTGAAAGCGTGCTAGAG------- 411
consensus_7223#1      ------------------------------------------------------------
consensus_7223#2      AATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTTAATGTTCCCCTT 511
                                                                                  

consensus_7223#0      -----------------
consensus_7223#3      -----------------
consensus_7223#1      -----------------
consensus_7223#2      TTCTCCCCGTTTTTNGG 528