These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence [CCGGTGTCCTATATAGTGAGCAAGAATGTGGATTTCTTTAGCAAATGTGAACATTAGCAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGCCAAAAGGACCGTGCCCCCATACGGTAGGACTGACGACTATCATGCTATGGGGAGTAAACCATACGTCTCTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTGTTGAGCCAAAGAAGATGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTTAAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGATGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGTTCCGTCCGGATGAATGAAGAGAGCTAATTTGTACTGCGTAGTAAGTAAATTAGATCAAAAATAGTCAACAATCAAGGCATCGTTGCAGAAATCAGCAAGATATGATAACATTATCAAACAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGTACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCTATTGTTACATTAATTAATTTA-TTTTTTCCGACAGATAGTTGCTAACCGTGAGATGCTTTACACCACGATAGCATAGATATGCGTAATAGACAAAATACC] [+] EMBL BM620707 [CCGGTGTCCTATATAGTGAGCAAGAATGTGGATTTCTTTAGCAAATGTGAACATTAGCAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGCCAAAAGGACCGTGCCCCCATACGGTAGGACTGACGACTATCATGCTATGGGGAGTAAACCATACGTCTCTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTGTTGAGCCAAAGAAGATGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTTAAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGATGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGTTCCGTCCGGATGAATGAAGAGAGCTAATTTGTACTGCGTAGTAAGTAAATTAGATCAAAAATAGTCAACAATCAAGGCATCGTTGCAGAAATCAGCAAGATATGATAACATTATCAAACAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGTACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCTATTGTTACATTAATTAATTTA TTTTTTCCGACAGATAGT ] [+] EMBL BM618918 [ ccgGTGGATTTCTTTAGCAAATGTGATCATTAGCAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGCCAAAAGGACCGTGCCCCCATAC GTAGGACT GACTATCCTGCTATGGGGGGGAATCAATTAGTCACTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTGTTGAGCCAAAGAAGAAGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTTAAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGATGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGTTCCGTCCGGATGAATGAAGAGAGCTAATTTGTACTGCGTAGTAAGTAAATTAGATCCAAAATAGTCAACAATCAAGGCATCGTTGCAGAAATCAGCAAGATATGATAACATTATCAAACAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGTACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCTATTGTTACATTAATTAATTTATTTTTTTCCGACAGATAGTTGCTAACCGTGAGATGCTTTACACCACGATAGCATAGATATGCGTAATAGACAAAATACC] consensusID : consensus_7225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGATATTGTTGACGCGTTGCCTACGGGGGCTCTGTGAACGTTTTGAATGTGGTTCTTGGACTTTAAAATTCGACAATGTTTGTATGGATGTGTATGAACCCAACAACACACCGATTTGACTCTCATCACACACCTGCAGCAAGCAAGGGTGCAGCAGCACCCTTTCGAGACGCACACCGGGATCCAGCACGTCCTTAGTGCGCTCATTGGTCGCTGTACAACGATGCGACCAAAGCGAACTTAAAGCCTGTTTCGTCCTGCGCTTGATGGTTTGCCGAGTAGCAGCAGCAGCAGAAGCAGCAGCTCTGCTCACAATATTCTTAACCGACGCCGTCCAAGCCAGGGCATAAGCTACACGTGTGTGTGTGTGTGAGATTGAGAGATAGACACGTCCCTGTTTCTTGCGCGCCCCTCCGGCTCAAAAAAAGCAAAACGAAAATAAAACCGAACACCACGCCAGCAAACCCAAAGCCGACCGAGCGATGCTCAACTCCACCAGCAAGCACATCCTGCACTGTGCGCTACTGTTCGGGCTGCTGATCGTGTTCGAGATCTTCTGCGGCGGCATCAAGGTGACGGAGAGCGCGTTCGTCGCGATCGACCCGTGGGGAGGAGTATGGTACGCTGCTAACGATCGTCCTGTACCTGCT] [+] EMBL BM646778 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGATATTGTTGACGCGTTGCCTACGGGGGCTCTGTGAACGTTTTGAATGTGGTTCTTGGACTTTAAAATTCGACAATGTTTGTATGGATGTGTATGAACCCAACAACACACCGATTTGACTCTCATCACACACCTGCAGCAAGCAAGGGTGCAGCAGCACCCTTTCGAGACGCACACCGGGATCCAGCACGTCCTTAGTGCGCTCATTGGTCGCTGTACAACGATGCGACCAAAGCGAACTTAAAGCCTGTTTCGTCCTGCGCTTGATGGTTTGCCGAGTAGCAGCAGCAGCAGAAGCAGCAGCTCTGCTCACAATATTCTTAACCGACGCCGTCCAAGCCAGGGCATAAGCTACACGTGTGTGTGTGTGTGAGATTGAGAGATAGACACGTCCCTGTTTCTTGCGCGCCCCTCCGGCTCAAAAAAAGCAAAACGAAAATAAAACCGAACACCACGCCAGCAAACCCAAAGCCGACCGAGCGATGCTCAACTCCACCAGCAAGCACATCCTGCACTGTGCGCTACTGTTCGGGCTGCTGATCGTGTTCGAGATCTTCTGCGGCGGCATCAAGGTGACGGAGAGCGCGTTCGTCGCGATCGACCCGTGGGGAGGAGTATGGTACGCTGCTAACGATCGTCCTGTACCTGCT] consensusID : consensus_7225#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [ATGTTGGAGCGGCGCGCAGTAGCTTTTTTTTTTTTTTTTTTTCCCCGAGTAGACGGCCCCGTTCGTACCAGCGAAACCGAAAAAACACCATAAATCCGGGCGAAAGGGTGTGACATTCGAGAAAAGAGATGTTTTCCTCGATGAAAACGCTCATGTCCGCGGCGACCAGGCCGATCTTGGCCCGGTCGTACGCGGCAAAGGCGGCGGTGAATGCCGCGGCCGGAGCGCAGGGTAAGGTAGTGGCCGTCATCGGTGCCGTCGTGGACGTGCAGTTCGACGAGCAGCTGCCCCCGATTCTGAACGCGCTGGAGGTGCAGGGCCGCAGCGCCCGGCTGGTGCTGGAGGTTGCGCAACATCTGGGTGAGAACACGGTGCGCACCATCGCCATGGACGGTACGGAGGGTCTGGTGCGTGGGCAGCGCGTGCTGGACACCGGTTCGCCCATCCGTATCCCGGTCGGGGCGGAGACGCTCGGTCGCATCATTAACGTGATCGGCGAGCCGATCGATGAGCGTGGCCCGATCGACACGAACCTGTCGGCGCCGATCCACGCCGAGGCGCCCGAGTTCATCGAGATGAGCGTCGAGCAGGAGATCCTGGTGACGGGCATCAAGGTGGTGGACCTGCTGGCCCCGTACGCGAAGGGCGGCAAGATCGGCCT] [+] EMBL BX607588 [ATGTTGGAGCGGCGCGCAGTAGCTTTTTTTTTTTTTTTTTTTCCCCGAGTAGACGGCCCCGTTCGTACCAGCGAAACCGAAAAAACACCATAAATCCGGGCGAAAGGGTGTGACATTCGAGAAAAGAGATGTTTTCCTCGATGAAAACGCTCATGTCCGCGGCGACCAGGCCGATCTTGGCCCGGTCGTACGCGGCAAAGGCGGCGGTGAATGCCGCGGCCGGAGCGCAGGGTAAGGTAGTGGCCGTCATCGGTGCCGTCGTGGACGTGCAGTTCGACGAGCAGCTGCCCCCGATTCTGAACGCGCTGGAGGTGCAGGGCCGCAGCGCCCGGCTGGTGCTGGAGGTTGCGCAACATCTGGGTGAGAACACGGTGCGCACCATCGCCATGGACGGTACGGAGGGTCTGGTGCGTGGGCAGCGCGTGCTGGACACCGGTTCGCCCATCCGTATCCCGGTCGGGGCGGAGACGCTCGGTCGCATCATTAACGTGATCGGCGAGCCGATCGATGAGCGTGGCCCGATCGACACGAACCTGTCGGCGCCGATCCACGCCGAGGCGCCCGAGTTCATCGAGATGAGCGTCGAGCAGGAGATCCTGGTGACGGGCATCAAGGTGGTGGACCTGCTGGCCCCGTACGCGAAGGGCGGCAAGATCGGCCT] consensusID : consensus_7225#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 502 fasta sequence [AGAATCCCCNGAGGTAGACTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGCAAAATC-AAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGTCGGAACTCATTGGCTGTACAAGACTCTCTCGGAT-CTATTAACCCGTAAGCGGGCGTGCGCACACATACAAGAAA-CCAATCTGATCCAGTTCTATAAATTATGAATGGGCGAACTTTATATCNGTTCCGGCTCCGTTTTTCCGCTTTTTTGTGTCAAACGACAATTCTAACCGCGTCAAGTACCAAGCACACACACANAACCACACAG-CTAACTTGCTGATGCTCATTAACGGTAACGGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTTGTTATAGGAAGTAGAGTTAGCGGAAGCGTTTGTTTGCCAACCATTTTGTGGAAAGGGTTTTGCGCGGGTTTGTG] [+] EMBL AL693499 [AGAATCCCCNGAGGTAGACTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGCAAAATC AAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGTCGGAACTCATTGGCTGTACAAGACTCTCTCGGAT CTATTAACCCGTAAGCGGGCGTGCGCACACATACAAGAAA CCAATCTGATCCAGTTCTATAAATTATGAATGGGCGAACTTTATATCNGTTCCGGCTCCGTTTTTCCGCTTTTTTGTGTCAAACGACAATTCTAACCGCGTCAAGTACCAAGCACACACACANAACCACACAG CTAACTTGCTGATGCTCATTAACGGTAACGGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTTGTTATAGGAAGTAGAGTTAGCGGAAGCGTTTGTTTGCCAACCATTTTGTGGAAAGGGTTTTGCGCGGGTTTGTG] [+] EMBL BM651597 [ ccgCTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGCAAAATCAAAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGTCGGAACTCATTGGCTGTACAAGACTCTCTCGGATCCTATTAACCCGTAAGCGGGCGTGCGCACACATACAAGAAACCCAATCTGATCCAG TCTATAAATTATGAATGGGCGAACTTTATATC GTTCCGGCTCCGTTTTTCCGC TTTTTGTGTCAAACGACAATTCTAACCGCGTCAAGTACCAAGCACACACACACACCCACACAGCCTAACTTGCTGATGCTCATTAACGGTAACGGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTTGTTATAGGAAGTAGAGTTAGCGGAAGCGTTTG TTGCCAACCATTT ] consensusID : consensus_7225#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 142 fasta sequence [CAAGTTCTCCCAATTATCAGCGCCGGCCAAACCGACCTGGTTGGCCAAAAAGCGAGAAAAAACGACCGACTGGTGCACTTTTTTGCCGGAAACCCCCAGTACCGGCATCTGACCCATCGGCATTTTTGGCTTGAGTTCTGGC] [+] EMBL CNS09J5L [CAAGTTCTCCCAATTATCAGCGCCGGCCAAACCGACCTGGTTGGCCAAAAAGCGAGAAAAAACGACCGACTGGTGCACTTTTTTGCCGGAAACCCCCAGTACCGGCATCTGACCCATCGGCATTTTTGGCTTGAGTTCTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7225#0 ---CCGGTGTCCTATATAGTGAGCAAGAATGTGGATTTCTTTAGCAAATGTGAACATTAG 57 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 ---------------------ATGTTGGAGCGGCGCGCAGTAGCTTTTTTTTTTTTTTTT 39 consensus_7225#1 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGATATTGTTGACGCGTTGCCTA 60 consensus_7225#3 ------------------------------------------------------------ consensus_7225#0 CAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGC 117 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 TTTCCCCGAGTAGACGGCCCCGTTCGTACCAGCGAAACCGAAAAAACACCATAAATCCGG 99 consensus_7225#1 CGGGGGCTCTGTGAACGTTTTGAATGTGGTTCTTGGACTTTAAAATTCGACAATGTTTGT 120 consensus_7225#3 ------------------------------------------------------------ consensus_7225#0 CAAAAGGACCGTGCCCCCATACGGTAGGACTGACGACTATCATGCTATGGGGAGTAAACC 177 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 GCGAAAGGGTGTGACATTCGAGAAAAGAGATGTTTTCCTCGATGAAAACGCTCATGTCCG 159 consensus_7225#1 ATGGATGTGTATGAACCCAACAACACACCGATTTGACTCTCATCACACACCTGCAGCAAG 180 consensus_7225#3 --------------------------------------------AGAATCCCCNGAGGTA 16 consensus_7225#0 ATACGTCTCTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTG 237 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 CGGCGACCAGGCCGATCTTGGCCCGGTCGTACGCGGCAAAGGCGGCGGTGAATGCCGCGG 219 consensus_7225#1 CAAGGGTGCAGCAGCACCCTTTCGAGACGCACACCGGGATCCAGCACGTCCTTAGTGCGC 240 consensus_7225#3 GACTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGC-- 74 consensus_7225#0 TTGAGCCAAAGAAGATGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTT 297 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 CCGGAGCGCAGGGTAAGGTAGTGGCCGTCATCGGTGCCGTCGTGGACGTGCAGTTCGACG 279 consensus_7225#1 TCATTGGTCGCTGTACAACGATG-CGACCAAAGCGAACTTAAAGCCTGTTTCGTCCTGCG 299 consensus_7225#3 --AAAATCAAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGT 132 consensus_7225#0 AAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGA 357 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 AGCAGCTGCCCCCGATTCTGAACGCGCTGGAGGTGCAGGGCCGCAGCGCCCGGCTGGTGC 339 consensus_7225#1 CTTGATGGTTTGCCGAGTAGCAGCAGCAGCAGAAGCAGCAGCTCTGCTCACAATATTCTT 359 consensus_7225#3 CGGAACTCATTGGCTGTACAAGACTCTCTCGGATCTATTAACCCGTAAGCGGGCGTGCGC 192 consensus_7225#0 TGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGT 417 consensus_7225#4 -------------------------------------------------------CAAGT 5 consensus_7225#2 TGGAGGTTGCGCAACATCTGGGTGAGAACACGGTGCGCACCATCGCCATGGACGGTACGG 399 consensus_7225#1 AACCGACGCCGTCCAAGCCAGGGCATAAGCTACACGTGTGTGTGTGTGTGAGATTGAGAG 419 consensus_7225#3 ACACATACAAGAAACCAATCTGATCCAGTTCTATAAATTATGAATGGGCGAACTTTATAT 252 * consensus_7225#0 TCCGTCCGG---ATGAATGAAGAGAGCTAATT--TGTACTGCGTAGTAAGTA---AATTA 469 consensus_7225#4 TC--TCCCA---ATTATCAGCGCCGGCCAAAC--CGACCTGGTTGGCCAAAA---AGCGA 55 consensus_7225#2 AGGGTCTGGTGCGTGGGCAGCGCGTGCTGGACACCGGTTCGCCCATCCGTATCCCGGTCG 459 consensus_7225#1 ATAGACACGTCCCTGTTTCTTGCGCGCCCCTCCGGCTCAAAAAAAGCAAAACGAAAATAA 479 consensus_7225#3 CNGTTCCGGCTCCGTTTTTCCGCTTTTTTGTG--TCAAACGACAATTCTAACCGCGTCAA 310 * * consensus_7225#0 GATCAAAAATAGTCAACAATCAAGGCATCGTTGCAGA--AATCAGCAAGATATGATAACA 527 consensus_7225#4 GA--AAAAACGACCGACTGGTGCACTTTTTTGCCGGA--AACCCCCAG--TACCGGCATC 109 consensus_7225#2 GGGCGGAGACGCTCGGTCGCATCATTAACGTGATCGGCGAGCCGATCGATGAGCGTGGCC 519 consensus_7225#1 AACCGAACACCACGCCAGCAAACCCAAAGCCGACCGAGCGATGCTCAA--CTCCACCAGC 537 consensus_7225#3 GTACCAAGCACACACACANAACCACACAGCTAACTTGCTGATGCTCAT--TAACGGTAAC 368 * consensus_7225#0 TTATCAAA-CAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGT 586 consensus_7225#4 TGACCCAT-CGGCATTTTTGGCTTGAGTTCTGGC-------------------------- 142 consensus_7225#2 CGATCGACACGAACCTGTCGGCGCCGATCCACGCCGAGGCGCCCGAGTTCATCGAGATGA 579 consensus_7225#1 AAGCACATCCTGCACTGTGCGCTACTGTTCGGGCTGCTGA--TCGTGTTCGAGATCTTCT 595 consensus_7225#3 GGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTT 428 * consensus_7225#0 ACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCT-ATTGT 645 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 GCGTCGAGCAGGAGATCCTGGTGACGGGCATCAAGGTGGTGGACCTGCTGGCCC-CGTAC 638 consensus_7225#1 GCGGCGGCATCAAGGTGACGGAGAGCGCGTTCGTCGCGATCGACCCGTGGGGAGGAGTAT 655 consensus_7225#3 GTTATAGGAAGTAGAGTTAGCGGAAGCGTTTGTTTGCCAACCATTTTGTGGAAAGGGTTT 488 consensus_7225#0 TACATTAATTAATTTATTTTTTCCGACAGATAGTTGCTAACCGTGAGATGCTTTACACCA 705 consensus_7225#4 ------------------------------------------------------------ consensus_7225#2 GCGAAGGGCGGCAAGATCGGCCT------------------------------------- 661 consensus_7225#1 GGTACGCTGCTAACGATCGTCCTGTACCTGCT---------------------------- 687 consensus_7225#3 TGCGCGGGTTTGTG---------------------------------------------- 502 consensus_7225#0 CGATAGCATAGATATGCGTAATAGACAAAATACC 739 consensus_7225#4 ---------------------------------- consensus_7225#2 ---------------------------------- consensus_7225#1 ---------------------------------- consensus_7225#3 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||