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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence
[CCGGTGTCCTATATAGTGAGCAAGAATGTGGATTTCTTTAGCAAATGTGAACATTAGCAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGCCAAAAGGACCGTGCCCCCATACGGTAGGACTGACGACTATCATGCTATGGGGAGTAAACCATACGTCTCTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTGTTGAGCCAAAGAAGATGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTTAAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGATGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGTTCCGTCCGGATGAATGAAGAGAGCTAATTTGTACTGCGTAGTAAGTAAATTAGATCAAAAATAGTCAACAATCAAGGCATCGTTGCAGAAATCAGCAAGATATGATAACATTATCAAACAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGTACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCTATTGTTACATTAATTAATTTA-TTTTTTCCGACAGATAGTTGCTAACCGTGAGATGCTTTACACCACGATAGCATAGATATGCGTAATAGACAAAATACC]
[+] EMBL BM620707 [CCGGTGTCCTATATAGTGAGCAAGAATGTGGATTTCTTTAGCAAATGTGAACATTAGCAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGCCAAAAGGACCGTGCCCCCATACGGTAGGACTGACGACTATCATGCTATGGGGAGTAAACCATACGTCTCTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTGTTGAGCCAAAGAAGATGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTTAAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGATGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGTTCCGTCCGGATGAATGAAGAGAGCTAATTTGTACTGCGTAGTAAGTAAATTAGATCAAAAATAGTCAACAATCAAGGCATCGTTGCAGAAATCAGCAAGATATGATAACATTATCAAACAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGTACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCTATTGTTACATTAATTAATTTA TTTTTTCCGACAGATAGT ]
[+] EMBL BM618918 [ ccgGTGGATTTCTTTAGCAAATGTGATCATTAGCAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGCCAAAAGGACCGTGCCCCCATAC GTAGGACT GACTATCCTGCTATGGGGGGGAATCAATTAGTCACTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTGTTGAGCCAAAGAAGAAGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTTAAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGATGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGTTCCGTCCGGATGAATGAAGAGAGCTAATTTGTACTGCGTAGTAAGTAAATTAGATCCAAAATAGTCAACAATCAAGGCATCGTTGCAGAAATCAGCAAGATATGATAACATTATCAAACAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGTACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCTATTGTTACATTAATTAATTTATTTTTTTCCGACAGATAGTTGCTAACCGTGAGATGCTTTACACCACGATAGCATAGATATGCGTAATAGACAAAATACC]
consensusID : consensus_7225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGATATTGTTGACGCGTTGCCTACGGGGGCTCTGTGAACGTTTTGAATGTGGTTCTTGGACTTTAAAATTCGACAATGTTTGTATGGATGTGTATGAACCCAACAACACACCGATTTGACTCTCATCACACACCTGCAGCAAGCAAGGGTGCAGCAGCACCCTTTCGAGACGCACACCGGGATCCAGCACGTCCTTAGTGCGCTCATTGGTCGCTGTACAACGATGCGACCAAAGCGAACTTAAAGCCTGTTTCGTCCTGCGCTTGATGGTTTGCCGAGTAGCAGCAGCAGCAGAAGCAGCAGCTCTGCTCACAATATTCTTAACCGACGCCGTCCAAGCCAGGGCATAAGCTACACGTGTGTGTGTGTGTGAGATTGAGAGATAGACACGTCCCTGTTTCTTGCGCGCCCCTCCGGCTCAAAAAAAGCAAAACGAAAATAAAACCGAACACCACGCCAGCAAACCCAAAGCCGACCGAGCGATGCTCAACTCCACCAGCAAGCACATCCTGCACTGTGCGCTACTGTTCGGGCTGCTGATCGTGTTCGAGATCTTCTGCGGCGGCATCAAGGTGACGGAGAGCGCGTTCGTCGCGATCGACCCGTGGGGAGGAGTATGGTACGCTGCTAACGATCGTCCTGTACCTGCT]
[+] EMBL BM646778 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGATATTGTTGACGCGTTGCCTACGGGGGCTCTGTGAACGTTTTGAATGTGGTTCTTGGACTTTAAAATTCGACAATGTTTGTATGGATGTGTATGAACCCAACAACACACCGATTTGACTCTCATCACACACCTGCAGCAAGCAAGGGTGCAGCAGCACCCTTTCGAGACGCACACCGGGATCCAGCACGTCCTTAGTGCGCTCATTGGTCGCTGTACAACGATGCGACCAAAGCGAACTTAAAGCCTGTTTCGTCCTGCGCTTGATGGTTTGCCGAGTAGCAGCAGCAGCAGAAGCAGCAGCTCTGCTCACAATATTCTTAACCGACGCCGTCCAAGCCAGGGCATAAGCTACACGTGTGTGTGTGTGTGAGATTGAGAGATAGACACGTCCCTGTTTCTTGCGCGCCCCTCCGGCTCAAAAAAAGCAAAACGAAAATAAAACCGAACACCACGCCAGCAAACCCAAAGCCGACCGAGCGATGCTCAACTCCACCAGCAAGCACATCCTGCACTGTGCGCTACTGTTCGGGCTGCTGATCGTGTTCGAGATCTTCTGCGGCGGCATCAAGGTGACGGAGAGCGCGTTCGTCGCGATCGACCCGTGGGGAGGAGTATGGTACGCTGCTAACGATCGTCCTGTACCTGCT]
consensusID : consensus_7225#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[ATGTTGGAGCGGCGCGCAGTAGCTTTTTTTTTTTTTTTTTTTCCCCGAGTAGACGGCCCCGTTCGTACCAGCGAAACCGAAAAAACACCATAAATCCGGGCGAAAGGGTGTGACATTCGAGAAAAGAGATGTTTTCCTCGATGAAAACGCTCATGTCCGCGGCGACCAGGCCGATCTTGGCCCGGTCGTACGCGGCAAAGGCGGCGGTGAATGCCGCGGCCGGAGCGCAGGGTAAGGTAGTGGCCGTCATCGGTGCCGTCGTGGACGTGCAGTTCGACGAGCAGCTGCCCCCGATTCTGAACGCGCTGGAGGTGCAGGGCCGCAGCGCCCGGCTGGTGCTGGAGGTTGCGCAACATCTGGGTGAGAACACGGTGCGCACCATCGCCATGGACGGTACGGAGGGTCTGGTGCGTGGGCAGCGCGTGCTGGACACCGGTTCGCCCATCCGTATCCCGGTCGGGGCGGAGACGCTCGGTCGCATCATTAACGTGATCGGCGAGCCGATCGATGAGCGTGGCCCGATCGACACGAACCTGTCGGCGCCGATCCACGCCGAGGCGCCCGAGTTCATCGAGATGAGCGTCGAGCAGGAGATCCTGGTGACGGGCATCAAGGTGGTGGACCTGCTGGCCCCGTACGCGAAGGGCGGCAAGATCGGCCT]
[+] EMBL BX607588 [ATGTTGGAGCGGCGCGCAGTAGCTTTTTTTTTTTTTTTTTTTCCCCGAGTAGACGGCCCCGTTCGTACCAGCGAAACCGAAAAAACACCATAAATCCGGGCGAAAGGGTGTGACATTCGAGAAAAGAGATGTTTTCCTCGATGAAAACGCTCATGTCCGCGGCGACCAGGCCGATCTTGGCCCGGTCGTACGCGGCAAAGGCGGCGGTGAATGCCGCGGCCGGAGCGCAGGGTAAGGTAGTGGCCGTCATCGGTGCCGTCGTGGACGTGCAGTTCGACGAGCAGCTGCCCCCGATTCTGAACGCGCTGGAGGTGCAGGGCCGCAGCGCCCGGCTGGTGCTGGAGGTTGCGCAACATCTGGGTGAGAACACGGTGCGCACCATCGCCATGGACGGTACGGAGGGTCTGGTGCGTGGGCAGCGCGTGCTGGACACCGGTTCGCCCATCCGTATCCCGGTCGGGGCGGAGACGCTCGGTCGCATCATTAACGTGATCGGCGAGCCGATCGATGAGCGTGGCCCGATCGACACGAACCTGTCGGCGCCGATCCACGCCGAGGCGCCCGAGTTCATCGAGATGAGCGTCGAGCAGGAGATCCTGGTGACGGGCATCAAGGTGGTGGACCTGCTGGCCCCGTACGCGAAGGGCGGCAAGATCGGCCT]
consensusID : consensus_7225#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 502 fasta sequence
[AGAATCCCCNGAGGTAGACTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGCAAAATC-AAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGTCGGAACTCATTGGCTGTACAAGACTCTCTCGGAT-CTATTAACCCGTAAGCGGGCGTGCGCACACATACAAGAAA-CCAATCTGATCCAGTTCTATAAATTATGAATGGGCGAACTTTATATCNGTTCCGGCTCCGTTTTTCCGCTTTTTTGTGTCAAACGACAATTCTAACCGCGTCAAGTACCAAGCACACACACANAACCACACAG-CTAACTTGCTGATGCTCATTAACGGTAACGGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTTGTTATAGGAAGTAGAGTTAGCGGAAGCGTTTGTTTGCCAACCATTTTGTGGAAAGGGTTTTGCGCGGGTTTGTG]
[+] EMBL AL693499 [AGAATCCCCNGAGGTAGACTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGCAAAATC AAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGTCGGAACTCATTGGCTGTACAAGACTCTCTCGGAT CTATTAACCCGTAAGCGGGCGTGCGCACACATACAAGAAA CCAATCTGATCCAGTTCTATAAATTATGAATGGGCGAACTTTATATCNGTTCCGGCTCCGTTTTTCCGCTTTTTTGTGTCAAACGACAATTCTAACCGCGTCAAGTACCAAGCACACACACANAACCACACAG CTAACTTGCTGATGCTCATTAACGGTAACGGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTTGTTATAGGAAGTAGAGTTAGCGGAAGCGTTTGTTTGCCAACCATTTTGTGGAAAGGGTTTTGCGCGGGTTTGTG]
[+] EMBL BM651597 [ ccgCTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGCAAAATCAAAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGTCGGAACTCATTGGCTGTACAAGACTCTCTCGGATCCTATTAACCCGTAAGCGGGCGTGCGCACACATACAAGAAACCCAATCTGATCCAG TCTATAAATTATGAATGGGCGAACTTTATATC GTTCCGGCTCCGTTTTTCCGC TTTTTGTGTCAAACGACAATTCTAACCGCGTCAAGTACCAAGCACACACACACACCCACACAGCCTAACTTGCTGATGCTCATTAACGGTAACGGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTTGTTATAGGAAGTAGAGTTAGCGGAAGCGTTTG TTGCCAACCATTT ]
consensusID : consensus_7225#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 142 fasta sequence
[CAAGTTCTCCCAATTATCAGCGCCGGCCAAACCGACCTGGTTGGCCAAAAAGCGAGAAAAAACGACCGACTGGTGCACTTTTTTGCCGGAAACCCCCAGTACCGGCATCTGACCCATCGGCATTTTTGGCTTGAGTTCTGGC]
[+] EMBL CNS09J5L [CAAGTTCTCCCAATTATCAGCGCCGGCCAAACCGACCTGGTTGGCCAAAAAGCGAGAAAAAACGACCGACTGGTGCACTTTTTTGCCGGAAACCCCCAGTACCGGCATCTGACCCATCGGCATTTTTGGCTTGAGTTCTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7225#0 ---CCGGTGTCCTATATAGTGAGCAAGAATGTGGATTTCTTTAGCAAATGTGAACATTAG 57
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 ---------------------ATGTTGGAGCGGCGCGCAGTAGCTTTTTTTTTTTTTTTT 39
consensus_7225#1 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGATATTGTTGACGCGTTGCCTA 60
consensus_7225#3 ------------------------------------------------------------
consensus_7225#0 CAACCATTTGTCCGACCTCGTGGTACAGTCGTCAACTCGTACGACTTAACAACATGCCGC 117
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 TTTCCCCGAGTAGACGGCCCCGTTCGTACCAGCGAAACCGAAAAAACACCATAAATCCGG 99
consensus_7225#1 CGGGGGCTCTGTGAACGTTTTGAATGTGGTTCTTGGACTTTAAAATTCGACAATGTTTGT 120
consensus_7225#3 ------------------------------------------------------------
consensus_7225#0 CAAAAGGACCGTGCCCCCATACGGTAGGACTGACGACTATCATGCTATGGGGAGTAAACC 177
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 GCGAAAGGGTGTGACATTCGAGAAAAGAGATGTTTTCCTCGATGAAAACGCTCATGTCCG 159
consensus_7225#1 ATGGATGTGTATGAACCCAACAACACACCGATTTGACTCTCATCACACACCTGCAGCAAG 180
consensus_7225#3 --------------------------------------------AGAATCCCCNGAGGTA 16
consensus_7225#0 ATACGTCTCTGAAAGCCAACTCCACAAGTGGTACAGGCAGGCCTAGACCGACAACGGTTG 237
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 CGGCGACCAGGCCGATCTTGGCCCGGTCGTACGCGGCAAAGGCGGCGGTGAATGCCGCGG 219
consensus_7225#1 CAAGGGTGCAGCAGCACCCTTTCGAGACGCACACCGGGATCCAGCACGTCCTTAGTGCGC 240
consensus_7225#3 GACTGAAACTGAATCTCATACCCCGGTCAGTTACTGCAACCGTTTGTGAAGAGGCTGC-- 74
consensus_7225#0 TTGAGCCAAAGAAGATGAACAAGACCATTAGCAACGCTTAGTATTGAATGCAAATTTGTT 297
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 CCGGAGCGCAGGGTAAGGTAGTGGCCGTCATCGGTGCCGTCGTGGACGTGCAGTTCGACG 279
consensus_7225#1 TCATTGGTCGCTGTACAACGATG-CGACCAAAGCGAACTTAAAGCCTGTTTCGTCCTGCG 299
consensus_7225#3 --AAAATCAAGAATGTCGCAACAACTTTCCCTTCCACGGGGGAGGTGGTTGTGTGTCTGT 132
consensus_7225#0 AAAAATGAATAATAAAAAGCAATGTAGCTTTACTTACGGAAATACGCACAAATTTCACGA 357
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 AGCAGCTGCCCCCGATTCTGAACGCGCTGGAGGTGCAGGGCCGCAGCGCCCGGCTGGTGC 339
consensus_7225#1 CTTGATGGTTTGCCGAGTAGCAGCAGCAGCAGAAGCAGCAGCTCTGCTCACAATATTCTT 359
consensus_7225#3 CGGAACTCATTGGCTGTACAAGACTCTCTCGGATCTATTAACCCGTAAGCGGGCGTGCGC 192
consensus_7225#0 TGAAAGATCTGTTATAATCAAAATACAAGCCACACAAATGGGCACAAACGTTTCTTAAGT 417
consensus_7225#4 -------------------------------------------------------CAAGT 5
consensus_7225#2 TGGAGGTTGCGCAACATCTGGGTGAGAACACGGTGCGCACCATCGCCATGGACGGTACGG 399
consensus_7225#1 AACCGACGCCGTCCAAGCCAGGGCATAAGCTACACGTGTGTGTGTGTGTGAGATTGAGAG 419
consensus_7225#3 ACACATACAAGAAACCAATCTGATCCAGTTCTATAAATTATGAATGGGCGAACTTTATAT 252
*
consensus_7225#0 TCCGTCCGG---ATGAATGAAGAGAGCTAATT--TGTACTGCGTAGTAAGTA---AATTA 469
consensus_7225#4 TC--TCCCA---ATTATCAGCGCCGGCCAAAC--CGACCTGGTTGGCCAAAA---AGCGA 55
consensus_7225#2 AGGGTCTGGTGCGTGGGCAGCGCGTGCTGGACACCGGTTCGCCCATCCGTATCCCGGTCG 459
consensus_7225#1 ATAGACACGTCCCTGTTTCTTGCGCGCCCCTCCGGCTCAAAAAAAGCAAAACGAAAATAA 479
consensus_7225#3 CNGTTCCGGCTCCGTTTTTCCGCTTTTTTGTG--TCAAACGACAATTCTAACCGCGTCAA 310
* *
consensus_7225#0 GATCAAAAATAGTCAACAATCAAGGCATCGTTGCAGA--AATCAGCAAGATATGATAACA 527
consensus_7225#4 GA--AAAAACGACCGACTGGTGCACTTTTTTGCCGGA--AACCCCCAG--TACCGGCATC 109
consensus_7225#2 GGGCGGAGACGCTCGGTCGCATCATTAACGTGATCGGCGAGCCGATCGATGAGCGTGGCC 519
consensus_7225#1 AACCGAACACCACGCCAGCAAACCCAAAGCCGACCGAGCGATGCTCAA--CTCCACCAGC 537
consensus_7225#3 GTACCAAGCACACACACANAACCACACAGCTAACTTGCTGATGCTCAT--TAACGGTAAC 368
*
consensus_7225#0 TTATCAAA-CAATGAAGATGGTGCCGCTTTTGAACTCTTAAGCTGTCGTTTTCCTTTCGT 586
consensus_7225#4 TGACCCAT-CGGCATTTTTGGCTTGAGTTCTGGC-------------------------- 142
consensus_7225#2 CGATCGACACGAACCTGTCGGCGCCGATCCACGCCGAGGCGCCCGAGTTCATCGAGATGA 579
consensus_7225#1 AAGCACATCCTGCACTGTGCGCTACTGTTCGGGCTGCTGA--TCGTGTTCGAGATCTTCT 595
consensus_7225#3 GGGCGCGGAACAGAGAGTTAAACGTGATTTCGATTTTAAGCAACGCACGTGTGACCAGTT 428
*
consensus_7225#0 ACGTTAGACGCTTGATCGTGTTCAAGCTAGATATTGAAATTATTAATTATGGCT-ATTGT 645
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 GCGTCGAGCAGGAGATCCTGGTGACGGGCATCAAGGTGGTGGACCTGCTGGCCC-CGTAC 638
consensus_7225#1 GCGGCGGCATCAAGGTGACGGAGAGCGCGTTCGTCGCGATCGACCCGTGGGGAGGAGTAT 655
consensus_7225#3 GTTATAGGAAGTAGAGTTAGCGGAAGCGTTTGTTTGCCAACCATTTTGTGGAAAGGGTTT 488
consensus_7225#0 TACATTAATTAATTTATTTTTTCCGACAGATAGTTGCTAACCGTGAGATGCTTTACACCA 705
consensus_7225#4 ------------------------------------------------------------
consensus_7225#2 GCGAAGGGCGGCAAGATCGGCCT------------------------------------- 661
consensus_7225#1 GGTACGCTGCTAACGATCGTCCTGTACCTGCT---------------------------- 687
consensus_7225#3 TGCGCGGGTTTGTG---------------------------------------------- 502
consensus_7225#0 CGATAGCATAGATATGCGTAATAGACAAAATACC 739
consensus_7225#4 ----------------------------------
consensus_7225#2 ----------------------------------
consensus_7225#1 ----------------------------------
consensus_7225#3 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||