These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1039 fasta sequence [CCGCGGACGCGTGGGAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGAAGTGACCTCTTTCGGAAGCGGGTATCCGGGCGACCCGACTACGAAAAAGTTTTTGGGCGAAATTGATCTGGTGTTTGGATTTCCACGATTGGTAAGGTTTAGCTGGTCCACTGCGGGGAATGCCCTGGAGAAGAAGGCATATGATATGGAATTCGAGGATGAGACAGACGCCAAGGATGCCGAGAAAGCGTCGTATGGCAGTAAGAAGCTGTCCAAGTATTTTGCAACATCGAAAAACGAAAACAGAAAGCGACACGAATACTTTCGGGAACGTTGTTTGGAGCATGTAGCGGATATTTAGAAAGAATAAAGTTGGTCGTATAACATAAAAAAAAAAA] [+] EMBL BM654355 [CCGCGGACGCGTGGGAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATC ] [-] EMBL AGA281633 [ AATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGAAGTGACCTCTTTCGGAAGCGGGTATCCGGGCGACCCGACTACGAAAAAGTTTTTGGGCGAAATTGATCTGGTGTTTGGATTTCCACGATTGGTAAGGTTTAGCTGGTCCACTGCGGGGAATGCCCTGGAGAAGAAGGCATATGATATGGAATTCGAGGATGAGACAGACGCCAAGGATGCCGAGAAAGCGTCGTATGGCAGTAAGAAGCTGTCCAAGTATTTTGCAACATCGAAAAACGAAAACAGAAAGCGACACGAATACTTTCGGGAACGTTGTTTGGAGCATGTAGCGGATATTTAGAAAGAATAAAGTTGGTCGTATAACATAAAAAAAAAAA] consensusID : consensus_7239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 648 fasta sequence [CCGCCCACGCGTCCGAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGA] [+] EMBL BM611876 [CCGCCCACGCGTCCGAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGA] [+] EMBL AL933627 [ ATTGGGACCGTACA TTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATG ] [+] EMBL BX619525 [ TAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTG ] [+] EMBL AGA283215 [ CGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGa ] consensusID : consensus_7239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence [CCGCCTACTTGCAAGCCAAAAAAAATGGACAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACA] [+] EMBL BM594448 [CCGCCTACTTGCAAGCCAAAAAAAATGGACAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7239#0 CCGCGGACGCGTGGGAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAG 60 consensus_7239#1 ------------------------------------------------------CCGCCC 6 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 TCGAGAAT-AGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAA 119 consensus_7239#1 ACGCGTCCGAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAA 66 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 AAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGG 179 consensus_7239#1 AAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGG 126 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 TGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTG 239 consensus_7239#1 TGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTG 186 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 TCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGAC 299 consensus_7239#1 TCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGAC 246 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 GGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGC 359 consensus_7239#1 GGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGC 306 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 CCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAG 419 consensus_7239#1 CCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAG 366 consensus_7239#2 -------------------------------------CCGCCTACTTGCAAGCCAAAAAA 23 * * **** ** * ** consensus_7239#0 AACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGC 479 consensus_7239#1 AACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGC 426 consensus_7239#2 AATGGACAAAAAAGTGAAGCAAGAGCC--TGAAAGTCATTCGGATGTGAAGCAG-TCGAG 80 ** * * * * ** *** * * ** * * ** * ** *** consensus_7239#0 AATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAA 539 consensus_7239#1 AATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAA 486 consensus_7239#2 AATAGA-GAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAAC-GCTAAAAAC 138 *** ** * ******* * *** * * * ** * * ** ** *** consensus_7239#0 GTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGC 599 consensus_7239#1 GTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGC 546 consensus_7239#2 TTCGTATACGTTTCCGACA----------------------------------------- 157 * * * * ** * consensus_7239#0 CGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCA 659 consensus_7239#1 CGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCA 606 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 CGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGAAGTGACCTCTTTCGGAAG 719 consensus_7239#1 CGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGA------------------ 648 consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 CGGGTATCCGGGCGACCCGACTACGAAAAAGTTTTTGGGCGAAATTGATCTGGTGTTTGG 779 consensus_7239#1 ------------------------------------------------------------ consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 ATTTCCACGATTGGTAAGGTTTAGCTGGTCCACTGCGGGGAATGCCCTGGAGAAGAAGGC 839 consensus_7239#1 ------------------------------------------------------------ consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 ATATGATATGGAATTCGAGGATGAGACAGACGCCAAGGATGCCGAGAAAGCGTCGTATGG 899 consensus_7239#1 ------------------------------------------------------------ consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 CAGTAAGAAGCTGTCCAAGTATTTTGCAACATCGAAAAACGAAAACAGAAAGCGACACGA 959 consensus_7239#1 ------------------------------------------------------------ consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 ATACTTTCGGGAACGTTGTTTGGAGCATGTAGCGGATATTTAGAAAGAATAAAGTTGGTC 1019 consensus_7239#1 ------------------------------------------------------------ consensus_7239#2 ------------------------------------------------------------ consensus_7239#0 GTATAACATAAAAAAAAAAA 1039 consensus_7239#1 -------------------- consensus_7239#2 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||