cluster # 725

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Anopheles gambiae
cluster # 725 cluster # 725 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_725#0 length = 705 sequences # 1

consensus_725#1 length = 464 sequences # 1

consensusID : consensus_725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [AGCAGAATCGGCACGTGGAGAAGACGGACTCGCGCTCACGAAGGAGCTGTCCGAGCTGGAGCGTTCCGTGCGGGACCAGGAGTACGTGCTGGAGAAGGTCGCCACGAACAGTGTGGAAATGGCTCGACAGCTGGAAGAGAGCCAGCAGGCAACGCAGCAGCAGATATCGGATTTGCAACACTGCTACTATCAACGGCAAAATCCACCCCTTTTCATCTACCAAATGCCGATCGACCAGTTCGACGCAAAGTGTGACCAGTTTCTTAAGTACCTGGAGCTGTACGTGAAGAAGCACTTCACCGTGAAACGGCTCGACAACTCAAAGTCAACGGACGATGGGGACAATCAGCAGGTGATCGATGAGCTGGAGGGCATTAAGATGCGCCTGGACGAGGAGGAGCTGAAGCTGCTGGAGGCAAAGCGCGAGTATGCCGGCGTGATGAAGCTTGTCGAGCGCTTGCAGGGCCATAGCTGGATGCCGCTGAAAGTGTCCGCGCTAAAGAAAACAGTGCGTCGAGCTGAGGGCCGCCAACGAGCAGGACCTGTTGCGGATGGATTTGCTGAAGCACGAGCTCGACAACGCTCATCAGGGCAGGGTGAATTGAGGCTTGACAGATCGAATTCGGTACCTGTACGAAGAACAAGCCGGGGTCAAGCTTAAACCGTGCGGTCAGCCNGGCATTGGAGTACCANTCCAGNGGGTTT]

[+] EMBL BX467969             [AGCAGAATCGGCACGTGGAGAAGACGGACTCGCGCTCACGAAGGAGCTGTCCGAGCTGGAGCGTTCCGTGCGGGACCAGGAGTACGTGCTGGAGAAGGTCGCCACGAACAGTGTGGAAATGGCTCGACAGCTGGAAGAGAGCCAGCAGGCAACGCAGCAGCAGATATCGGATTTGCAACACTGCTACTATCAACGGCAAAATCCACCCCTTTTCATCTACCAAATGCCGATCGACCAGTTCGACGCAAAGTGTGACCAGTTTCTTAAGTACCTGGAGCTGTACGTGAAGAAGCACTTCACCGTGAAACGGCTCGACAACTCAAAGTCAACGGACGATGGGGACAATCAGCAGGTGATCGATGAGCTGGAGGGCATTAAGATGCGCCTGGACGAGGAGGAGCTGAAGCTGCTGGAGGCAAAGCGCGAGTATGCCGGCGTGATGAAGCTTGTCGAGCGCTTGCAGGGCCATAGCTGGATGCCGCTGAAAGTGTCCGCGCTAAAGAAAACAGTGCGTCGAGCTGAGGGCCGCCAACGAGCAGGACCTGTTGCGGATGGATTTGCTGAAGCACGAGCTCGACAACGCTCATCAGGGCAGGGTGAATTGAGGCTTGACAGATCGAATTCGGTACCTGTACGAAGAACAAGCCGGGGTCAAGCTTAAACCGTGCGGTCAGCCNGGCATTGGAGTACCANTCCAGNGGGTTT]




>consensus_725#0
AGCAGAATCGGCACGTGGAGAAGACGGACTCGCGCTCACGAAGGAGCTGTCCGAGCTGGA
GCGTTCCGTGCGGGACCAGGAGTACGTGCTGGAGAAGGTCGCCACGAACAGTGTGGAAAT
GGCTCGACAGCTGGAAGAGAGCCAGCAGGCAACGCAGCAGCAGATATCGGATTTGCAACA
CTGCTACTATCAACGGCAAAATCCACCCCTTTTCATCTACCAAATGCCGATCGACCAGTT
CGACGCAAAGTGTGACCAGTTTCTTAAGTACCTGGAGCTGTACGTGAAGAAGCACTTCAC
CGTGAAACGGCTCGACAACTCAAAGTCAACGGACGATGGGGACAATCAGCAGGTGATCGA
TGAGCTGGAGGGCATTAAGATGCGCCTGGACGAGGAGGAGCTGAAGCTGCTGGAGGCAAA
GCGCGAGTATGCCGGCGTGATGAAGCTTGTCGAGCGCTTGCAGGGCCATAGCTGGATGCC
GCTGAAAGTGTCCGCGCTAAAGAAAACAGTGCGTCGAGCTGAGGGCCGCCAACGAGCAGG
ACCTGTTGCGGATGGATTTGCTGAAGCACGAGCTCGACAACGCTCATCAGGGCAGGGTGA
ATTGAGGCTTGACAGATCGAATTCGGTACCTGTACGAAGAACAAGCCGGGGTCAAGCTTA
AACCGTGCGGTCAGCCNGGCATTGGAGTACCANTCCAGNGGGTTT

consensusID : consensus_725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [TTGTTATTTTGTACGGCATTCAACAGCGACCCTGTNNAAATCGTACAAAATGGAAGAATCAAGCAAGGTACTGGAAACGCTTAAAAAGATCGGCGGCATCGACGTGCGTCACCTGTGGATCATACACGATGAAACGTTTCGCGAGTTTTTCGATTGGTTCACCAAAATTGACGATGACAATCTTGTTACGGACATGCTGTTGAAGAACTACCAAGAGCTCGATCGCAATGGAACCGTGTTGAACGATGCACTGTTAGAAGAGCAACTGCACGCACTGAACCACGAGTTTAGCGGCATTCTCGAGCACACGGATCGCGATGTGGAAGCATTGGAGCTGCAGCTCGAGCAGCTGGTGGAGGTGGAGGAAAAGTACGAGAAACTGCTGAACGGTGCCAAGAAGACNGACCTCGCGCTCACGAAGGAGCTGTCCGAGCNGGAGCGTTCCGTGCGGGACCAGGAGTACG]

[+] EMBL BX619735             [TTGTTATTTTGTACGGCATTCAACAGCGACCCTGTNNAAATCGTACAAAATGGAAGAATCAAGCAAGGTACTGGAAACGCTTAAAAAGATCGGCGGCATCGACGTGCGTCACCTGTGGATCATACACGATGAAACGTTTCGCGAGTTTTTCGATTGGTTCACCAAAATTGACGATGACAATCTTGTTACGGACATGCTGTTGAAGAACTACCAAGAGCTCGATCGCAATGGAACCGTGTTGAACGATGCACTGTTAGAAGAGCAACTGCACGCACTGAACCACGAGTTTAGCGGCATTCTCGAGCACACGGATCGCGATGTGGAAGCATTGGAGCTGCAGCTCGAGCAGCTGGTGGAGGTGGAGGAAAAGTACGAGAAACTGCTGAACGGTGCCAAGAAGACNGACCTCGCGCTCACGAAGGAGCTGTCCGAGCNGGAGCGTTCCGTGCGGGACCAGGAGTACG]




>consensus_725#1
TTGTTATTTTGTACGGCATTCAACAGCGACCCTGTNNAAATCGTACAAAATGGAAGAATC
AAGCAAGGTACTGGAAACGCTTAAAAAGATCGGCGGCATCGACGTGCGTCACCTGTGGAT
CATACACGATGAAACGTTTCGCGAGTTTTTCGATTGGTTCACCAAAATTGACGATGACAA
TCTTGTTACGGACATGCTGTTGAAGAACTACCAAGAGCTCGATCGCAATGGAACCGTGTT
GAACGATGCACTGTTAGAAGAGCAACTGCACGCACTGAACCACGAGTTTAGCGGCATTCT
CGAGCACACGGATCGCGATGTGGAAGCATTGGAGCTGCAGCTCGAGCAGCTGGTGGAGGT
GGAGGAAAAGTACGAGAAACTGCTGAACGGTGCCAAGAAGACNGACCTCGCGCTCACGAA
GGAGCTGTCCGAGCNGGAGCGTTCCGTGCGGGACCAGGAGTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_725#0      AGCAGAATCGGCACGTGGAGAAGACGGACTCGCGCTCACGAAGGAGCTGTCCGAGCTGGA 60
consensus_725#1      ------------------------------------------------------------
                                                                                 

consensus_725#0      GCGTTCCGTGCGGGACCAGGAGTACGTGCTGGAGAAGGTCGCCACGAACAGTGTGGAAAT 120
consensus_725#1      ---------------TTGTTATTTTGTACGGCAT----TCAACAGCGACCCTGTNNAAAT 41
                                         * *  ** * * *     **  **   **  ***  ****

consensus_725#0      GGCTCGACAGCTGGAAGAGAGCCAGCAGGCAACGCAGCAGCAGATATCG-GATTTGCAAC 179
consensus_725#1      CGTACAAAA--TGGAAGA-ATCAAGCAAGGTAC-TGGAAACGCTTAAAAAGATCGGCGGC 97
                      *  * * *  ******* * * **** *  **   * * *   **    ***  **  *

consensus_725#0      ACTGCTAC-TATCAACGGCAAAATCCACCCCTTTTCATCTACCAAATGCCGATCGACCAG 238
consensus_725#1      ATCGACGTGCGTCACCTGTGGATCATACACGATGAAACGTTTCGCGAGTTTTTCGATTGG 157
                     *  *       *** * *   *    ** *  *   *  *  *    *    ****   *

consensus_725#0      TTCGACGCAA---AGTGTGACCAGTTTCTTAAGTACCTGGAGCTGTACG-TGAAGAAGCA 294
consensus_725#1      TTCACCAAAATTGACGATGACAATCTTGTTACGGACATGCTGTTGAAGAACTACCAAGAG 217
                     ***  *  **   *   **** *  ** *** * ** **  * ** *     *  ***  

consensus_725#0      CTTCACCGTGAAACGGCTCGACAACTCAAAGTCAACGGACGATGGGGACAATCAGCAGGT 354
consensus_725#1      CTCGATCGCAATGGAACCGTGTTGAACGATG-CACTGTTAGAAGAGCAACTGCACGCACT 276
                     **  * **  *     *         * * * **  *   ** * * *    **     *

consensus_725#0      GATCGATGAGCTGGAGGGCATTAAGATGCGCCTGGACGAGGAGGAGCTGAAGCTGCTGGA 414
consensus_725#1      GAACCACGAGTTTAGCGGCATTCTCGAGCACACGGATCGCGATG---TGGAAGCATTGGA 333
                     ** * * *** *    ******     ** *  ***    ** *   ** *     ****

consensus_725#0      GGCAAAGCGCGAGTATGCCGGCGTGATGAAGCTTGTCGAGCGCTTGCAGGGCCATAGCTG 474
consensus_725#1      GCTGCAGCTCGAGCA---------------GCTGGTGGAGG---TGGAGGAAAAGTACGA 375
                     *    *** **** *               *** ** ***    ** ***   *   *  

consensus_725#0      GATGCCGCTGAAAGTGTCCGCGCTAAAGAAAACAGTGCGTCGAGCTGAGGGCCGCCAACG 534
consensus_725#1      GAAACTGCTGAACGGTGCCAAG--AAGACNGACCTCGCGCTCACGAAGGAGCTGTC--CG 431
                     **  * ****** *   **  *  **     **   ***   *     * ** * *  **

consensus_725#0      AGCAGGACCTGTTGCGGATGGATTTGCTGAAGCACGAGCTCGACAACGCTCATCAGGGCA 594
consensus_725#1      AGCNGGAGC-GTTCCGTGCGGGAC--CAGGAGTACG------------------------ 464
                     *** *** * *** **   **     * * ** ***                        

consensus_725#0      GGGTGAATTGAGGCTTGACAGATCGAATTCGGTACCTGTACGAAGAACAAGCCGGGGTCA 654
consensus_725#1      ------------------------------------------------------------
                                                                                 

consensus_725#0      AGCTTAAACCGTGCGGTCAGCCNGGCATTGGAGTACCANTCCAGNGGGTTT 705
consensus_725#1      ---------------------------------------------------