|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1305 fasta sequence
[CCGGTTTACACCCGAACAAATACAATCTGAATGAGTTTTGTTATTACAATCTTTCCACAACGCGCCAGCATGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACCACGTCGTAGCACCAAAAAGGAGAAACCCAACACATTCAAAGCTAAACGGAGACCTAAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCAAACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGCCGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAGGATGC---AGTGCAGTCGCTCCAAAACATGCCAGTCGCTGTCAACCCACAGAACGGGGGTATCAAAGAGAATAATCAACGAAAATCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGAGTGGTACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTTGTTTTACGTCGATCGTAACCCTGGTATACGGGGAGGAAGATGTTCCACTGTACGTCGTCGGTACCGATGTGGAGGAACAATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACCGGGACCACCGACGGTCTGCCACTATCGAACCGGGCGAATGTAGTGTGATTGTGCTAGACAGCACGTTCGATCAAACGATGAACAACAGCATGAAGGACATGAAGATCAACGCTGCTGAGTGTGTACAACCAGTAACGGTGGACACTGCCGAACCGTGCACGAGTTCGAGCGGTACCAGTACCAATACCAGTGCCACTAAAGGACAGACGAAGAAGAAGATCCGTTCCAACAGTCAAGCTGCCGAAACGATCGTTACCGATGTGATCGATTTGAGCGACTATCCCGATACGGAGCAGCAACCTTCTTGCTCGTTATATGCTGCCAGCAATACCAAAACGCCAGCCTTTCCCACGCTGGATCGTATCCCGCTCGGGTACAGCGCATCCAACGCTGCTCGAGCAAAACCCAATCGTCCTCAACAGAAGCCACACACAAATGGCAGTGGTAGTGGTAGTGGTGGTAGTGGTAAAAGTGGTGGTGGTAGTGGTAAAAGTGGGTGGGTGGCGGTGGAAAAGCCACGAATTCGAACGATGTGGTTATTGGGTCGGCTCTTCATGTAGAAAAGAAGATGAAGCGGATGGTAATCATTGATGGAAATAATGTCGCGTATGGCCATCTCAATGGGAAGATGTTCTCGGTCAAGGG]
[+] EMBL BM626147 [CCGGTTTACACCCGAACAAATACAATCTGAATGAGTTTTGTTATTACAATCTTTCCACAACGCGCCAGCATGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACCACGTCGTAGCACCAAAAAGGAGAAACCCAACACATTCAAAGCTAAACGGAGACCTAAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCAAACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGCCGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAGGATGC AGTGCAGTCGCTCCAAAACATGCCAGTCGCTGTCAACCCACAGAACGGGGGTATCAAAGAGAATAATCAACGAAAATCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGAGTGGTACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTTGTTTTACGTCGATCGTAACCCTGGTATACGGGGAGGAAGATGTTCCACTGTACGTCGTCGGTACCGATGTGGAGGAACAATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACCGGGACCACCGACGGTCTGCCACTATCGA ]
[+] EMBL CNS08RJZ [ GACCTAAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCAAACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGCCGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAAGATGCAGTAGTGCAGTCGCTCCAAAACATGCCAGTCGCTGTCAATCCACAGAACGGGGGTATCAAAGAGAATAATCAACAAAAATCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGGGTGGTACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTT ]
[+] EMBL BM594880 [ ccgAATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACC GGACCACCGACGTTCTGCCACTATCGAACCGGGCGAATGTAGTGTGATTGTGCTAGACAGCACGTTCGATCAAACGATGAACAACAGCATGAAGGACATGAAGATCAACGCTGCTGAGTGTGTACAACCAGTAACGGTGGACACTGCCGAACCGTGCACGAGTTCGAGCGGTACCAGTACCAATACCAGTGCCACTAAAGGACAGACGAAGAAGAAGATCCGTTCCAACAGTCAAGCTGCCGAAACGATCGTTACCGATGTGATCGATTTGAGCGACTATCCCGATACGGAGCAGCAACCTTCTTGCTCGTTATATGCTGCCAGCAATACCAAAACGCCAGCCTTTCCCACGCTGGATCGTATCCCGCTCGGGTACAGCGCATCCAACGCTGCTCGAGCAAAACCCAATCGTCCTCAACAGAAGCCACACACAAATGGCAGTGGTAGTGGTAGTGGTGGTAGTGGTAAAAGTGGTGGTGGTAGTGGTAAAAGTGGGTGGGTGGCGGTGGAAAAGCCACGAATTCGAACGATGTGGTTATTGGGTCGGCTCTTCATGTAGAAAAGAAGATGAAGCGGATGGTAATCATTGATGGAAATAATGTCGCGTATGGCCATCTCAATGGGAAGATGTTCTCGGTCAAGGG]
consensusID : consensus_7257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 519 fasta sequence
[ACACTTTTTTTTCCCACTGTACAACAGAAAACAGTGCACAGTTTTATGGTTTATAAAAAAAAATACACTCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGATGCAGCGTAGGACCGTACCGTCCGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGGAGAAATGTCAAGAAGATCACGAAAATTATCGTTCGATATGATCACACCATCAAACTGTTCAGCGATTGATAGTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCAGCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACTTTGATACCTTTTTAATTTAAACTGAGGCACTACGGCGGTCACCTCGAAGCCGAGCTTTTTAAAGTAATTTATACACAGCTCTAGCCCCTTGACCGAGAACATCTTCCCATTGAGATGGCCA]
[+] EMBL CNS08RK0 [ACACTTTTTTTTCCCACTGTACAACAGAAAACAGTGCACAGTTTTATGGTTTATAAAAAAAAATACACTCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGATGCAGCGTAGGACCGTACCGTCCGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGGAGAAATGTCAAGAAGATCACGAAAATTATCGTTCGATATGATCACACCATCAAACTGTTCAGCGATTGATAGTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCAGCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACT ]
[-] EMBL BX626518 [ TCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGTTGCAGNGTAGGACCGTNCCGTCCGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGT ]
[+] EMBL AGA282681 [ AGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGGAGAAATGTCAAGAAGATCACGAAAATTATCGTTCGATATGATCACACCATCAAACTGTTCGGCGATTGATAGTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCAGCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACTTTGATACCTTTTTAATTTAAACTGAGGCACTACGGCGGTCACCTCGAAGCCGAGCTTTTTAAAGTAATTTATACACAGCTCTAGCCCCTTGACCGAGAACATCTTCCCATTGAGATGGCCA]
consensusID : consensus_7257#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence
[ATTTTTGCGAAAGCGCTAGCCCGCAGCCAGCACCACACATCGATTAGTATTGTGGGATAAATTCCTCCTTGCGAATTACAATTGTGCTACTGTGCCCGCAACATCAAATATACTACCCAAATAGCGATAGACTCTTTATTCGTTTACCCTAACTTTTAACGCAACGACGTCCCAAACCCCCACCGACAATCCAATGCGGTTGGAACAGCGTGGAACAGTTGTTTCGGCGAACACACGGCACGAACACGCAACGGCGAGAACGAGTAATAATACTTACGTAGTAGAGGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACC]
[+] EMBL AGA281053 [ATTTTTGCGAAAGCGCTAGCCCGCAGCCAGCACCACACATCGATTAGTATTGTGGGATAAATTCCTCCTTGCGAATTACAATTGTGCTACTGTGCCCGCAACATCAAATATACTACCCAAATAGCGATAGACTCTTTATTCGTTTACCCTAACTTTTAACGCAACGACGTCCCAAACCCCCACCGACAATCCAATGCGGTTGGAACAGCGTGGAACAGTTGTTTCGGCGAACACACGGCACGAACACGCAACGGCGAGAACGAGTAATAATACTTACGTAGTAGAGGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7257#0 CCGGTTTACACCCGAACAAATACAATCTGAATGAGTTTTGTTATTACAATCTTTCCACAA 60
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CGCGCCAGCATGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCT 120
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CAACCACGTCGTAGCACCAAAAAGGAGAAACCCAACACATTCAAAGCTAAACGGAGACCT 180
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 AAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCA 240
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 AACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGC 300
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAGGATGCAGTGCAGTCGCTCCAA 360
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 AACATGCCAGTCGCTGTCAACCCACAGAACGGGGGTATCAAAGAGAATAATCAACGAAAA 420
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 TCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGAGTGGT 480
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 ACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTTGTTTTACGTCGATCGTAAC 540
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CCTGGTATACGGGGAGGAAGATGTTCCACTGTACGTCGTCGGTACCGATGTGGAGGAACA 600
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 ATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACC 660
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GGGACCACCGACGGTCTGCCACTATCGAACCGGGCGAATGTAGTGTGATTGTGCTAGACA 720
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GCACGTTCGATCAAACGATGAACAACAGCATGAAGGACATGAAGATCAACGCTGCTGAGT 780
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 -ACACTTTTTTTTCCCACTGTACAACAGAAAACAGTGCACAGTTTTATGGTTTATAAAAA 59
consensus_7257#0 GTGTACAACCAGTAACGGTGGACACTGCCGAACCGTGCACGAGTTCGAGCGGTACCAGTA 840
consensus_7257#2 ------------------------------------------------------------
consensus_7257#1 A---AAATACACTCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGATGCAGCGT 116
consensus_7257#0 CCAATACCAGTGCCACTAAAGGACAGACGAAGAAGAAGATCCGTTCCAACAGTCAAGCTG 900
consensus_7257#2 --------ATTTTTGCGAAAGCGCTAGCCCGCAGCCAGCACCACACATCGATTAGTATTG 52
consensus_7257#1 AGGACCGTACCGTC-CGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCA----- 170
* * * * * * ** * * *
consensus_7257#0 CCGAAACGATCGTTACCGATGTGATCGATTTGAGCGACTATCCCGATACGGAGCAGCAAC 960
consensus_7257#2 TGGGATAAATTCCTCCTTGCGAATTACAATTGTGCTACTGTGCC----CGCAACATCAAA 108
consensus_7257#1 -CGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGG--AGAAATGTCAAG 227
* * * ** * * * * * * ***
consensus_7257#0 CTTCTTGCTCGTTATATGCTGCCAGCAATACCAAAACGCCAGCCTTTCCCACGCTGGATC 1020
consensus_7257#2 TATACTACCCAAATAGCGATAGACTCTTTATTCGTTTACCCTAACTTTTAACGC--AACG 166
consensus_7257#1 AAGATCACGAAAATTATCGTTCGAT-ATGATCACACCATCAAACTGTTCAGCGATTGATA 286
* * * * * ** *
consensus_7257#0 GTATC--CCGCTC-GGGTACAGCGCATCCAACGCTGCTCGAGCAAAACCCAATCGTCCTC 1077
consensus_7257#2 ACGTC--CCAAAC-CCCCACCGACAATCCAATGCGGTTGGAACAGCGTGGAACAGTTGTT 223
consensus_7257#1 GTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCA 346
* * * ** * * ** * * *
consensus_7257#0 AACAGAAGCCACACACAAATGGCAGTGGTAGTGGTAGTGGTGGTAGTG-GTAAAAGTGGT 1136
consensus_7257#2 T-------CGGCGAACACACGGCACGAACAC--GCAACGGCGAGAACGAGTAATAATACT 274
consensus_7257#1 GCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACTTTGATACC 406
* *** * * * * *
consensus_7257#0 GGTGGTAGTGGTAAAAGTGGGTGGGTGGCGGTGGA---AAAGCCACGAATTCGAACGATG 1193
consensus_7257#2 TACG-TAGTAGAGGGCTCGCACTAG-GGCGGGCAA---GAAGCAGCAA--TCAAACGGGC 327
consensus_7257#1 TTTTTAATTTAAACTGAGGCACTAC-GGCGGTCACCTCGAAGCCGAGCTTTTTAAAGTAA 465
* * * ***** **** * ** *
consensus_7257#0 TGGTTATTGGGTCGGCTCTTCATGTAGAAAAGAAGATGAAGCGGATGGTAATCATTGATG 1253
consensus_7257#2 CTCCTGCTCAACC----------------------------------------------- 340
consensus_7257#1 TTTATACACAGCTCTAGCCCCTTGACCGAGAACATCTTCCCATTGAGATGGCCA------ 519
*
consensus_7257#0 GAAATAATGTCGCGTATGGCCATCTCAATGGGAAGATGTTCTCGGTCAAGGG 1305
consensus_7257#2 ----------------------------------------------------
consensus_7257#1 ----------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||