These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1384 fasta sequence [AAACTTCTGTTGTTGGTAACAAGTTCCCAACACGCGTCCCACACTTTCTTTCTACAACGATGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATGAATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGCCACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCAATCCGCAGAATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGG-CCGAAAAGAGTGACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGAT-GAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAACGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACACACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTCGAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGATGATTATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGA-C-CTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCAGGATGAG-CCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAAACTCAA] [+] EMBL CNS08YNF [AAACTTCTGTTGTTGGTAACAAGTTCCCAACACGCGTCCCACACTTTCTTTCTACAACGATGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATGAATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGCCACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCAATCCGCAGAATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGG CCGAAAAGAGTGACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGATAGAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAGCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAG ] [+] EMBL CNS08L6U [ aAAGT CCA ACGCGTCCCACACTTTCTTTCTACAACGATGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATGAATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGCCACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCAATCCGCAGAATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGGCCCGAAAAGAGTGACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTCCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGAT GAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGAGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAACGAGCTAAATGAGGCCAAAAAAAAAATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTATTGCACATAATGTCCTCCG ] [-] EMBL CNS08YNG [ CCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGAT GAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAGCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACACACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTCGAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGATGATTATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGA C CTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCAGGATGAG CCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAAACTC ] [-] EMBL CNS08L6V [ CAGTTGTACCGAATCCGGGTGATAGTGGAT GAAAAGGTACGTGAGCAAGAAAGCTACTCTTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAACGAGCTAAATGAGGCCCATTCGCATATCAACATCCATCGAATATCGGGCAGGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGGGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACAAACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTCGAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGGTGATTATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGACC CTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCAGGATGAGCCCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAAACTCAA] [+] EMBL BX622051 [ GTGGAT GAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGAACAGCAACGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTGGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTTAAGCAAGTGTTGTACAGAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAGCTAATACACACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTATTGCAATGCGTAGAAGAAGTCGAAAAGCTGCTTCCTGACATCCATCAAGCAAGTTTTGGGTTCGGCGAAGAGAGCTTGATTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACTGACTCAGATGATTATGAATCGACCGAAGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGA CGCT AATCCGAATGAAAATGTACTAGAGAAGCTAATGAATCTTAAGCTGTCAGGGTGAGTCCTGCGTTGTAAAATTAATAT ] consensusID : consensus_7259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence [GGCAAGAATCCCCCCGAGGTTNNAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACGAATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGCCACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCAATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGG-CGAAAAGAGTGACTTTTCCG-CGAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTCTTGATTTGGACAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTCGTACCGAATCCGGGTGATAGTGGATGAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGAACAGCAACCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGT] [+] EMBL AL930730 [GGCAAGAATCCCCCCGAGGTTNNAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACGAATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGCCACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCAATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGG CGAAAAGAGTGACTTTTCCG CGAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTCTTGATTTGGACAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTCGTACCGAATCCGGGTGATAGTGGATGAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGAACAGCAACCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGT] [+] EMBL BX614369 [ GGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACGAATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGCCACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCAATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGGCCGAAAAGAGTGACTTTTCCGCCGAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTCTTGATTTGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7259#0 AAACTTCTGTTGTTGGTAACAAGTTCCCAACACGCGTCCCACACTTTCTTTCTACAACGA 60 consensus_7259#1 ---------------------------------------GGCAAGAATCCCCC-CGAGGT 20 ** * * * * consensus_7259#0 TGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGG 120 consensus_7259#1 TNNAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGG 80 * ********************************************************* consensus_7259#0 ATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATG 180 consensus_7259#1 ATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACG 140 ********************************************************** * consensus_7259#0 AATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAAC 240 consensus_7259#1 AATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAAC 200 **************** ******************************************* consensus_7259#0 CGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGC 300 consensus_7259#1 CGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGC 260 ******** ******* ******** ********************* ************ consensus_7259#0 CACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCT 360 consensus_7259#1 CACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCT 320 ********* ************ ********* ************ ************** consensus_7259#0 GCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCA 420 consensus_7259#1 GCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCA 380 ******************************************************* **** consensus_7259#0 ATCCGCAG-AATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGGCCGAAAAGAGTG 479 consensus_7259#1 ATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGGC-GAAAAGAGTG 439 ******** **** ************ ********************** ********** consensus_7259#0 ACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTC 539 consensus_7259#1 ACTTTTCCGC-GAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTC 498 ********** ******** * ***** *********** ******************* consensus_7259#0 TCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCC 599 consensus_7259#1 TTGATTTGGACAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTCGTACCGAATCC 558 * ******** ************************************* *********** consensus_7259#0 GGGTGATAGTGGATGAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATC 659 consensus_7259#1 GGGTGATAGTGGATGAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATC 618 **************************** ******************************* consensus_7259#0 GCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGA 719 consensus_7259#1 GCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGA 678 ***************************** **************** ************* consensus_7259#0 ACATCAAC-GAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACG 778 consensus_7259#1 ACAGCAACCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACG 738 *** **** *************************************************** consensus_7259#0 CTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGA 838 consensus_7259#1 CTGGCGT----------------------------------------------------- 745 ******* consensus_7259#0 TCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTG 898 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 TTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACACACG 958 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 TACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTT 1018 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 ATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTC 1078 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 GAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTT 1138 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 CAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGATGAT 1198 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 TATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACC 1258 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 GATACGGACCTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCA 1318 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 GGATGAGCCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAA 1378 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 ACTCAA 1384 consensus_7259#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||